Shalabh Thakur - Publications

University of Toronto, Toronto, ON, Canada 
Comparative Genomics, Bioinformatics, Evolution, Microbial Genomics

11 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Vázquez-Rosas-Landa M, Ponce-Soto GY, Aguirre-Liguori JA, Thakur S, Scheinvar E, Barrera-Redondo J, Ibarra-Laclette E, Guttman DS, Eguiarte LE, Souza V. Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation. Bmc Genomics. 21: 418. PMID 32571204 DOI: 10.1186/S12864-020-06829-Y  0.628
2019 Dillon MM, Thakur S, Almeida RND, Wang PW, Weir BS, Guttman DS. Recombination of ecologically and evolutionarily significant loci maintains genetic cohesion in the Pseudomonas syringae species complex. Genome Biology. 20: 3. PMID 30606234 DOI: 10.1186/S13059-018-1606-Y  0.646
2017 Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM. Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae. Scientific Reports. 7: 16133. PMID 29170530 DOI: 10.1038/S41598-017-16325-1  0.579
2016 Thakur S, Guttman DS. A De-Novo Genome Analysis Pipeline (DeNoGAP) for large-scale comparative prokaryotic genomics studies. Bmc Bioinformatics. 17: 260. PMID 27363390 DOI: 10.1186/S12859-016-1142-2  0.621
2016 Mott GA, Thakur S, Smakowska E, Wang PW, Belkhadir Y, Desveaux D, Guttman DS. Genomic screens identify a new phytobacterial microbe-associated molecular pattern and the cognate Arabidopsis receptor-like kinase that mediates its immune elicitation. Genome Biology. 17: 98. PMID 27160854 DOI: 10.1186/S13059-016-0955-7  0.57
2016 Thakur S, Weir BS, Guttman DS. Phytopathogen Genome Announcement: Draft Genome Sequences of 62 Pseudomonas syringae Type and Pathotype Strains. Molecular Plant-Microbe Interactions : Mpmi. MPMI01160013TA. PMID 26883489 DOI: 10.1094/Mpmi-01-16-0013-Ta  0.672
2012 O'Brien HE, Thakur S, Gong Y, Fung P, Zhang J, Yuan L, Wang PW, Yong C, Scortichini M, Guttman DS. Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut. Bmc Microbiology. 12: 141. PMID 22800299 DOI: 10.1186/1471-2180-12-141  0.646
2012 McCann HC, Nahal H, Thakur S, Guttman DS. Identification of innate immunity elicitors using molecular signatures of natural selection. Proceedings of the National Academy of Sciences of the United States of America. 109: 4215-20. PMID 22323605 DOI: 10.1073/Pnas.1113893109  0.569
2011 Thakur S, Jha S, Chattoo BB. CastorDB: a comprehensive knowledge base for Ricinus communis. Bmc Research Notes. 4: 356. PMID 21914200 DOI: 10.1186/1756-0500-4-356  0.366
2011 O'Brien HE, Thakur S, Guttman DS. Evolution of plant pathogenesis in Pseudomonas syringae: a genomics perspective. Annual Review of Phytopathology. 49: 269-89. PMID 21568703 DOI: 10.1146/Annurev-Phyto-072910-095242  0.67
2009 Thakur S, Jha S, Roy-Barman S, Chattoo B. Genomic resources of Magnaporthe oryzae (GROMO): a comprehensive and integrated database on rice blast fungus. Bmc Genomics. 10: 316. PMID 19604367 DOI: 10.1186/1471-2164-10-316  0.49
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