☰

Hagen Tilgner - Publications

Affiliations: 
2011 Universitat Pompeu Fabra, UPF 
Tree Info Similar researchers PubMed Report error

17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez JM, Hunt T, Lagarde J, Liang CE, ... ... Tilgner HU, et al. Systematic assessment of long-read RNA-seq methods for transcript identification and quantification. Biorxiv : the Preprint Server For Biology. PMID 37546854 DOI: 10.1101/2023.07.25.550582  0.306
2022 Hardwick SA, Hu W, Joglekar A, Fan L, Collier PG, Foord C, Balacco J, Lanjewar S, Sampson MM, Koopmans F, Prjibelski AD, Mikheenko A, Belchikov N, Jarroux J, Lucas AB, ... ... Tilgner HU, et al. Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue. Nature Biotechnology. PMID 35256815 DOI: 10.1038/s41587-022-01231-3  0.312
2019 Hardwick SA, Bassett SD, Kaczorowski D, Blackburn J, Barton K, Bartonicek N, Carswell SL, Tilgner HU, Loy C, Halliday G, Mercer TR, Smith MA, Mattick JS. Targeted, High-Resolution RNA Sequencing of Non-coding Genomic Regions Associated With Neuropsychiatric Functions. Frontiers in Genetics. 10: 309. PMID 31031799 DOI: 10.3389/fgene.2019.00309  0.336
2018 Gupta I, Collier PG, Haase B, Mahfouz A, Joglekar A, Floyd T, Koopmans F, Barres B, Smit AB, Sloan SA, Luo W, Fedrigo O, Ross ME, Tilgner HU. Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells. Nature Biotechnology. PMID 30320766 DOI: 10.1038/Nbt.4259  0.3
2016 Curado J, Iannone C, Tilgner H, Valcárcel J, Guigó R. Erratum to: Promoter-like epigenetic signatures in exons displaying cell type-specific splicing. Genome Biology. 17: 52. PMID 26993099 DOI: 10.1186/S13059-016-0890-7  0.683
2016 Pérez-Lluch S, Blanco E, Tilgner H, Curado J, Ruiz-Romero M, Corominas M, Guigó R. Absence of canonical histone marks of active chromatin in developmentally regulated genes F1000research. 5. DOI: 10.7490/F1000Research.1111898.1  0.71
2015 Curado J, Iannone C, Tilgner H, Valcárcel J, Guigó R. Promoter-like epigenetic signatures in exons displaying cell type-specific splicing. Genome Biology. 16: 236. PMID 26498677 DOI: 10.1186/S13059-015-0797-8  0.723
2015 Cenik C, Sarinay Cenik E, Byeon GW, Grubert F, Candille SI, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H, Ricci E, Snyder MP. Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans. Genome Research. PMID 26297486 DOI: 10.1101/Gr.193342.115  0.32
2015 Pérez-Lluch S, Blanco E, Tilgner H, Curado J, Ruiz-Romero M, Corominas M, Guigó R. Absence of canonical marks of active chromatin in developmentally regulated genes. Nature Genetics. 47: 1158-1167. PMID 26280901 DOI: 10.1038/Ng.3381  0.732
2015 Tilgner H, Jahanbani F, Blauwkamp T, Moshrefi A, Jaeger E, Chen F, Harel I, Bustamante CD, Rasmussen M, Snyder MP. Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events. Nature Biotechnology. PMID 25985263 DOI: 10.1038/Nbt.3242  0.319
2014 Tilgner H, Grubert F, Sharon D, Snyder MP. Defining a personal, allele-specific, and single-molecule long-read transcriptome. Proceedings of the National Academy of Sciences of the United States of America. 111: 9869-74. PMID 24961374 DOI: 10.1073/Pnas.1400447111  0.343
2012 Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Research. 22: 1775-89. PMID 22955988 DOI: 10.1101/Gr.132159.111  0.37
2012 Tilgner H, Knowles DG, Johnson R, Davis CA, Chakrabortty S, Djebali S, Curado J, Snyder M, Gingeras TR, Guigó R. Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs. Genome Research. 22: 1616-25. PMID 22955974 DOI: 10.1101/Gr.134445.111  0.715
2012 Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, ... ... Tilgner H, et al. Landscape of transcription in human cells. Nature. 489: 101-8. PMID 22955620 DOI: 10.1038/Nature11233  0.703
2011 Maxwell CA, Benítez J, Gómez-Baldó L, Osorio A, Bonifaci N, Fernández-Ramires R, Costes SV, Guinó E, Chen H, Evans GJ, Mohan P, Català I, Petit A, Aguilar H, Villanueva A, ... ... Tilgner H, et al. Interplay between BRCA1 and RHAMM regulates epithelial apicobasal polarization and may influence risk of breast cancer. Plos Biology. 9: e1001199. PMID 22110403 DOI: 10.1371/Journal.Pbio.1001199  0.656
2010 Tilgner H, Guigó R. From chromatin to splicing: RNA-processing as a total artwork. Epigenetics. 5: 180-4. PMID 20305391 DOI: 10.4161/epi.5.3.11319  0.466
2009 Tilgner H, Nikolaou C, Althammer S, Sammeth M, Beato M, Valcárcel J, Guigó R. Nucleosome positioning as a determinant of exon recognition. Nature Structural & Molecular Biology. 16: 996-1001. PMID 19684599 DOI: 10.1038/Nsmb.1658  0.472
Show low-probability matches.