Ning Jiang - Publications

Affiliations: 
Horticulture Michigan State University, East Lansing, MI 

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yang C, Chen J, Yu Z, Luo J, Li X, Zhou B, Jiang N. Mining of RNA Methylation-Related Genes and Elucidation of Their Molecular Biology in Gallbladder Carcinoma. Frontiers in Oncology. 11: 621806. PMID 33718182 DOI: 10.3389/fonc.2021.621806  0.96
2021 Ai JW, Zhang H, Zhou Z, Weng S, Huang H, Wang S, Shao L, Gao Y, Wu J, Ruan Q, Wang F, Jiang N, Chen J, Zhang W. Gene expression pattern analysis using dual-color RT-MLPA and integrative genome-wide association studies of eQTL for tuberculosis suscepitibility. Respiratory Research. 22: 23. PMID 33472618 DOI: 10.1186/s12931-020-01612-9  0.96
2020 Butler CL, Hickey MJ, Jiang N, Zheng Y, Gjertson D, Zhang Q, Rao P, Fishbein GA, Cadeiras M, Deng MC, Banchs HL, Torre G, DeNofrio D, Eisen HJ, Kobashigawa J, et al. Discovery of Non-HLA Antibodies Associated with Cardiac Allograft Rejection and Development and Validation of a Non-HLA Antigen Multiplex Panel: from Bench to Bedside. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. PMID 32185871 DOI: 10.1111/ajt.15863  0.8
2019 Ou S, Jiang N. LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons. Mobile Dna. 10: 48. PMID 31857828 DOI: 10.1186/s13100-019-0193-0  1
2019 Ou S, Su W, Liao Y, Chougule K, Agda JRA, Hellinga AJ, Lugo CSB, Elliott TA, Ware D, Peterson T, Jiang N, Hirsch CN, Hufford MB. Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline. Genome Biology. 20: 275. PMID 31843001 DOI: 10.1186/s13059-019-1905-y  1
2019 Cerbin S, Wai CM, VanBuren R, Jiang N. GingerRoot: a novel DNA transposon encoding integrase-related transposase in plants and animals. Genome Biology and Evolution. PMID 31633753 DOI: 10.1093/gbe/evz230  0.48
2019 Cui J, Jiang N, Hou X, Wu S, Zhang Q, Meng J, Luan Y. Genome-wide Identification of LncRNAs and Analysis of CeRNA Networks during Tomato Resistance to Phytophthora infestans. Phytopathology. PMID 31448997 DOI: 10.1094/PHYTO-04-19-0137-R  0.8
2019 Fei Q, Du MY, Qian LX, Chen HB, Chen J, Zhu HM, Tian XK, Jiang N, Gu JJ, He X, Yin L. Feedback loop in miR-449b-3p/ADAM17/NF-κB promotes metastasis in nasopharyngeal carcinoma. Cancer Medicine. PMID 31433128 DOI: 10.1002/cam4.2469  0.96
2019 Lai S, Wei Y, Wu Q, Zhou K, Liu T, Zhang Y, Jiang N, Xiao W, Chen J, Liu Q, Yu Y. Liposomes for effective drug delivery to the ocular posterior chamber. Journal of Nanobiotechnology. 17: 64. PMID 31084611 DOI: 10.1186/s12951-019-0498-7  0.96
2019 Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, ... ... Jiang N, et al. Author Correction: Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30842601 DOI: 10.1038/s41588-019-0380-4  1
2019 Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, ... ... Jiang N, et al. Origin and evolution of the octoploid strawberry genome. Nature Genetics. PMID 30804557 DOI: 10.1038/s41588-019-0356-4  1
2019 Li T, Zhou X, Ling Y, Jiang N, Ai J, Wu J, Chen J, Chen L, Qian X, Liu X, Xi X, Xia L, Fan X, Lu S, Zhang WH. Genetic and Clinical Profiles of Disseminated Bacillus Calmette-Guérin Disease and Chronic Granulomatous Disease in China. Frontiers in Immunology. 10: 73. PMID 30761141 DOI: 10.3389/fimmu.2019.00073  0.96
2019 Colle M, Leisner CP, Wai CM, Ou S, Bird KA, Wang J, Wisecaver JH, Yocca AE, Alger EI, Tang H, Xiong Z, Callow P, Ben-Zvi G, Brodt A, Baruch K, ... ... Jiang N, et al. Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry. Gigascience. PMID 30715294 DOI: 10.1093/gigascience/giz012  1
2018 Ou S, Chen J, Jiang N. Assessing genome assembly quality using the LTR Assembly Index (LAI). Nucleic Acids Research. PMID 30107434 DOI: 10.1093/nar/gky730  1
2018 Su Y, Ma X, Jiang N, Zhang Q, Li M, Li Y, Li S. Toxic target of trans-crotonaldehyde in mitochondria altered by diallyl disulfides for anti-myocardial ischemia. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 205: 568-573. PMID 30075437 DOI: 10.1016/j.saa.2018.07.058  0.8
2018 VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP. Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. Nature Communications. 9: 13. PMID 29296019 DOI: 10.1038/s41467-017-02546-5  1
2017 Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, ... ... Jiang N, et al. Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity. Gigascience. PMID 29253147 DOI: 10.1093/gigascience/gix124  1
2017 Ou S, Jiang N. LTR_retriever: a highly accurate and sensitive program for identification of long terminal-repeat retrotransposons. Plant Physiology. PMID 29233850 DOI: 10.1104/pp.17.01310  1
2016 Gao D, Zhao D, Abernathy B, Iwata-Otsubo A, Herrera-Estrella A, Jiang N, Jackson SA. Dynamics of a Novel Highly Repetitive CACTA Family in Common Bean (Phaseolus vulgaris). G3 (Bethesda, Md.). PMID 27185400 DOI: 10.1534/g3.116.028761  0.8
2016 Kang H, Zhu D, Lin R, Opiyo SO, Jiang N, Shiu SH, Wang GL. A novel method for identifying polymorphic transposable elements via scanning of high-throughput short reads. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 27098848 DOI: 10.1093/dnares/dsw011  0.8
2016 Zhao D, Ferguson AA, Jiang N. What makes up plant genomes: The vanishing line between transposable elements and genes Biochimica Et Biophysica Acta - Gene Regulatory Mechanisms. 1859: 366-380. DOI: 10.1016/j.bbagrm.2015.12.005  0.8
2015 Gao D, Jiang N, Wing RA, Jiang J, Jackson SA. Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science. 6: 216. PMID 25904926 DOI: 10.3389/fpls.2015.00216  0.8
2015 Jiang N, Liu HF, Li SD, Zhou WX, Zhang YX, Zhang Q, Yan XZ. An integrated metabonomic and proteomic study on Kidney-Yin Deficiency Syndrome patients with diabetes mellitus in China Acta Pharmacologica Sinica. 36: 689-698. DOI: 10.1038/aps.2014.169  0.8
2014 Wang X, Kang Y, Luo C, Zhao T, Liu L, Jiang X, Fu R, An S, Chen J, Jiang N, Ren L, Wang Q, Baillie JK, Gao Z, Yu J. Heteroresistance at the single-cell level: adapting to antibiotic stress through a population-based strategy and growth-controlled interphenotypic coordination. Mbio. 5: e00942-13. PMID 24520060 DOI: 10.1128/mBio.00942-13  0.96
2014 Zhao D, Jiang N. Nested insertions and accumulation of indels are negatively correlated with abundance of Mutator-like transposable elements in maize and rice Plos One. 9. PMID 24475224 DOI: 10.1371/journal.pone.0087069  0.8
2014 Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, et al. MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology. 164: 513-24. PMID 24306534 DOI: 10.1104/pp.113.230144  0.8
2013 Jiang N. Computational methods for identification of DNA transposons Methods in Molecular Biology. 1057: 289-304. DOI: 10.1007/978-1-62703-568-2_21  0.8
2013 Jiang N. Overview of repeat annotation and De Novo repeat identification Methods in Molecular Biology. 1057: 275-287. DOI: 10.1007/978-1-62703-568-2_20  0.8
2012 Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, ... ... Jiang N, et al. Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. Plos Genetics. 8: e1003064. PMID 23166516 DOI: 10.1371/journal.pgen.1003064  0.8
2012 Davidson RM, Gowda M, Moghe G, Lin H, Vaillancourt B, Shiu SH, Jiang N, Robin Buell C. Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution. The Plant Journal : For Cell and Molecular Biology. 71: 492-502. PMID 22443345 DOI: 10.1111/j.1365-313X.2012.05005.x  0.8
2010 Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/j.1365-313X.2010.04251.x  0.8
2010 Tsukamoto T, Hauck NR, Tao R, Jiang N, Iezzoni AF. Molecular and genetic analyses of four nonfunctional S haplotype variants derived from a common ancestral S haplotype identified in sour cherry (Prunus cerasus L.). Genetics. 184: 411-27. PMID 19917768 DOI: 10.1534/genetics.109.109728  0.8
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Jiang N, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/journal.pgen.1000728  0.8
2009 Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/j.1365-313X.2009.04005.x  0.8
2008 Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/tpc.108.063727  0.8
2007 Campbell MA, Zhu W, Jiang N, Lin H, Ouyang S, Childs KL, Haas BJ, Hamilton JP, Buell CR. Identification and characterization of lineage-specific genes within the poaceae Plant Physiology. 145: 1311-1322. PMID 17951464 DOI: 10.1104/pp.107.104513  0.8
2007 Ammiraju JS, Zuccolo A, Yu Y, Song X, Piegu B, Chevalier F, Walling JG, Ma J, Talag J, Brar DS, SanMiguel PJ, Jiang N, Jackson SA, Panaud O, Wing RA. Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 52: 342-51. PMID 17764506 DOI: 10.1111/j.1365-313X.2007.03242.x  0.8
2006 Holligan D, Zhang X, Jiang N, Pritham EJ, Wessler SR. The transposable element landscape of the model legume Lotus japonicus. Genetics. 174: 2215-28. PMID 17028332 DOI: 10.1534/genetics.106.062752  0.8
2006 Tsukamoto T, Hauck NR, Tao R, Jiang N, Iezzoni AF. Molecular characterization of three non-functional S-haplotypes in sour cherry (Prunus cerasus). Plant Molecular Biology. 62: 371-83. PMID 16915517 DOI: 10.1007/s11103-006-9026-x  0.8
2004 Jiang N, Bao Z, Zhang X, Eddy SR, Wessler SR. Pack-MULE transposable elements mediate gene evolution in plants. Nature. 431: 569-73. PMID 15457261 DOI: 10.1038/nature02953  0.8
2004 Feltus FA, Wan J, Schulze SR, Estill JC, Jiang N, Paterson AH. An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Research. 14: 1812-9. PMID 15342564 DOI: 10.1101/gr.2479404  0.8
2004 Zhang X, Jiang N, Feschotte C, Wessler SR. PIF- and Pong-like transposable elements: distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements. Genetics. 166: 971-86. PMID 15020481 DOI: 10.1534/genetics.166.2.971  0.8
2004 Jiang N, Feschotte C, Zhang X, Wessler SR. Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Current Opinion in Plant Biology. 7: 115-9. PMID 15003209 DOI: 10.1016/j.pbi.2004.01.004  0.8
2003 Jiang N, Bao Z, Zhang X, Hirochika H, Eddy SR, McCouch SR, Wessler SR. An active DNA transposon family in rice. Nature. 421: 163-7. PMID 12520302 DOI: 10.1038/nature01214  0.8
2002 Jiang N, Jordan IK, Wessler SR. Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome. Plant Physiology. 130: 1697-705. PMID 12481052 DOI: 10.1104/pp.015412  0.8
2002 Jiang N, Bao Z, Temnykh S, Cheng Z, Jiang J, Wing RA, McCouch SR, Wessler SR. Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics. 161: 1293-305. PMID 12136031  0.8
2002 Peterson DG, Schulze SR, Sciara EB, Lee SA, Bowers JE, Nagel A, Jiang N, Tibbitts DC, Wessler SR, Paterson AH. Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery. Genome Research. 12: 795-807. PMID 11997346 DOI: 10.1101/gr.226102  0.8
2002 Feschotte C, Jiang N, Wessler SR. Plant transposable elements: where genetics meets genomics. Nature Reviews. Genetics. 3: 329-41. PMID 11988759 DOI: 10.1038/nrg793  0.8
2001 Zhang X, Feschotte C, Zhang Q, Jiang N, Eggleston WB, Wessler SR. P instability factor: an active maize transposon system associated with the amplification of Tourist-like MITEs and a new superfamily of transposases. Proceedings of the National Academy of Sciences of the United States of America. 98: 12572-7. PMID 11675493 DOI: 10.1073/pnas.211442198  0.8
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