Gavin Conant - Publications

Affiliations: 
Bioinformatics Research Center North Carolina State University, Raleigh, NC 

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Osman EY, Bolding MR, Villalón E, Kaifer KA, Lorson ZC, Tisdale S, Hao Y, Conant GC, Pires JC, Pellizzoni L, Lorson CL. Functional characterization of SMN evolution in mouse models of SMA. Scientific Reports. 9: 9472. PMID 31263170 DOI: 10.1038/s41598-019-45822-8  1
2019 An H, Qi X, Gaynor ML, Hao Y, Gebken SC, Mabry ME, McAlvay AC, Teakle GR, Conant GC, Barker MS, Fu T, Yi B, Pires JC. Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. Nature Communications. 10: 2878. PMID 31253789 DOI: 10.1038/s41467-019-10757-1  1
2019 Ellison MJ, Conant GC, Lamberson WR, Austin KJ, van Kirk E, Cunningham HC, Rule DC, Cammack KM. Predicting residual feed intake status using rumen microbial profiles in ewe lambs. Journal of Animal Science. PMID 31091313 DOI: 10.1093/jas/skz170  0.32
2018 Cammack KM, Austin KJ, Lamberson WR, Conant GC, Cunningham HC. RUMINANT NUTRITION SYMPOSIUM: Tiny but mighty: the role of the rumen microbes in livestock production. Journal of Animal Science. 96: 4481. PMID 30272229 DOI: 10.1093/jas/sky331  0.32
2018 Patil RD, Ellison MJ, Wolff SM, Shearer C, Wright AM, Cockrum RR, Austin KJ, Lamberson WR, Cammack KM, Conant GC. Poor feed efficiency in sheep is associated with several structural abnormalities in the community metabolic network of their ruminal microbes. Journal of Animal Science. PMID 29788417 DOI: 10.1093/jas/sky096  0.32
2018 Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses. Scientific Reports. 8: 7120. PMID 29720618 DOI: 10.1038/s41598-018-25620-4  1
2018 Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC. Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived. Genome Biology and Evolution. 10: 999-1011. PMID 29617811 DOI: 10.1093/gbe/evy061  0.8
2018 Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC. Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. Plos Genetics. 14: e1007267. PMID 29590103 DOI: 10.1371/journal.pgen.1007267  1
2018 Cammack KM, Austin KJ, Lamberson WR, Conant GC, Cunningham HC. Tiny but mighty: The role of the rumen microbes in livestock production. Journal of Animal Science. PMID 29385535 DOI: 10.1093/jas/skx053  0.32
2017 Washburn JD, Schnable JC, Conant GC, Brutnell TP, Shao Y, Zhang Y, Ludwig M, Davidse G, Pires JC. Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. Scientific Reports. 7: 13528. PMID 29051622 DOI: 10.1038/s41598-017-13236-z  1
2017 Wolff SM, Ellison MJ, Hao Y, Cockrum RR, Austin KJ, Baraboo M, Burch K, Lee HJ, Maurer T, Patil R, Ravelo A, Taxis TM, Truong H, Lamberson WR, Cammack KM, ... Conant GC, et al. Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome. Microbiome. 5: 60. PMID 28595639 DOI: 10.1186/s40168-017-0274-6  1
2016 Pires JC, Conant GC. Robust Yet Fragile: Expression Noise, Protein Misfolding, and Gene Dosage in the Evolution of Genomes. Annual Review of Genetics. PMID 27617972 DOI: 10.1146/annurev-genet-120215-035400  1
2015 Taxis TM, Wolff S, Gregg SJ, Minton NO, Zhang C, Dai J, Schnabel RD, Taylor JF, Kerley MS, Pires JC, Lamberson WR, Conant GC. The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity. Nucleic Acids Research. PMID 26420832 DOI: 10.1093/nar/gkv973  1
2015 Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, ... ... Conant GC, et al. The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America. PMID 26100883 DOI: 10.1073/pnas.1503926112  1
2014 Edger PP, Tang M, Bird KA, Mayfield DR, Conant G, Mummenhoff K, Koch MA, Pires JC. Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the Brassicaceae (mustards). Plos One. 9: e101341. PMID 24984034 DOI: 10.1371/journal.pone.0101341  1
2014 Dhroso A, Korkin D, Conant GC. The yeast protein interaction network has a capacity for self-organization. The Febs Journal. 281: 3420-32. PMID 24924781 DOI: 10.1111/febs.12870  1
2014 Conant GC, Birchler JA, Pires JC. Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time. Current Opinion in Plant Biology. 19: 91-8. PMID 24907529 DOI: 10.1016/j.pbi.2014.05.008  1
2014 Bekaert M, Conant GC. Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks. Plos One. 9: e87115. PMID 24489850 DOI: 10.1371/journal.pone.0087115  1
2014 Ellison MJ, Conant GC, Cockrum RR, Austin KJ, Truong H, Becchi M, Lamberson WR, Cammack KM. Diet alters both the structure and taxonomy of the ovine gut microbial ecosystem. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 21: 115-25. PMID 24170804 DOI: 10.1093/dnares/dst044  1
2013 Warren S, Wan XF, Conant G, Korkin D. Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome. Plos One. 8: e81027. PMID 24282564 DOI: 10.1371/journal.pone.0081027  1
2013 Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC. Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales. Seminars in Cell & Developmental Biology. 24: 320-31. PMID 23466286 DOI: 10.1016/j.semcdb.2013.02.002  1
2013 Pérez-Bercoff A, Hudson CM, Conant GC. A Conserved Mammalian Protein Interaction Network Plos One. 8. PMID 23320073 DOI: 10.1371/journal.pone.0052581  1
2012 Bekaert M, Edger PP, Hudson CM, Pires JC, Conant GC. Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis. The New Phytologist. 196: 596-605. PMID 22943527 DOI: 10.1111/j.1469-8137.2012.04302.x  1
2012 Casola C, Conant GC, Hahn MW. Very low rate of gene conversion in the yeast genome. Molecular Biology and Evolution. 29: 3817-26. PMID 22844073 DOI: 10.1093/molbev/mss192  1
2012 Wang S, Conant GC, Ou R, Beerntsen BT. Cloning and characterization of the peptidoglycan recognition protein genes in the mosquito, Armigeres subalbatus (Diptera: Culicidae). Journal of Medical Entomology. 49: 656-71. PMID 22679875 DOI: 10.1603/ME11165  1
2012 Reneker J, Lyons E, Conant GC, Pires JC, Freeling M, Shyu CR, Korkin D. Long identical multispecies elements in plant and animal genomes. Proceedings of the National Academy of Sciences of the United States of America. 109: E1183-91. PMID 22496592 DOI: 10.1073/pnas.1121356109  1
2012 Tang H, Woodhouse MR, Cheng F, Schnable JC, Pedersen BS, Conant G, Wang X, Freeling M, Pires JC. Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics. 190: 1563-74. PMID 22308264 DOI: 10.1534/genetics.111.137349  1
2011 Hudson CM, Puckett EE, Bekaert M, Pires JC, Conant GC. Selection for higher gene copy number after different types of plant gene duplications. Genome Biology and Evolution. 3: 1369-80. PMID 22056313 DOI: 10.1093/gbe/evr115  1
2011 Pérez-Bercoff Å, McLysaght A, Conant GC. Patterns of indirect protein interactions suggest a spatial organization to metabolism. Molecular Biosystems. 7: 3056-64. PMID 21881679 DOI: 10.1039/c1mb05168g  1
2011 Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, ... ... Conant G, et al. The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics. 43: 1035-9. PMID 21873998 DOI: 10.1038/ng.919  1
2011 Bekaert M, Conant GC. Transcriptional robustness and protein interactions are associated in yeast. Bmc Systems Biology. 5: 62. PMID 21545728 DOI: 10.1186/1752-0509-5-62  1
2011 Bekaert M, Edger PP, Pires JC, Conant GC. Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. The Plant Cell. 23: 1719-28. PMID 21540436 DOI: 10.1105/tpc.110.081281  1
2011 Hudson CM, Conant GC. Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes. Bmc Evolutionary Biology. 11: 89. PMID 21470417 DOI: 10.1186/1471-2148-11-89  1
2011 Bekaert M, Conant GC. Copy number alterations among mammalian enzymes cluster in the metabolic network. Molecular Biology and Evolution. 28: 1111-21. PMID 21051442 DOI: 10.1093/molbev/msq296  1
2010 Foy N, Jester B, Conant GC, Devine KM. The T box regulatory element controlling expression of the class I lysyl-tRNA synthetase of Bacillus cereus strain 14579 is functional and can be partially induced by reduced charging of asparaginyl-tRNAAsn. Bmc Microbiology. 10: 196. PMID 20649968 DOI: 10.1186/1471-2180-10-196  1
2009 Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen K, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, et al. Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Proceedings of the National Academy of Sciences of the United States of America. 106: 18644-9. PMID 19846765 DOI: 10.1073/pnas.0904691106  1
2009 Conant GC, Stadler PF. Solvent exposure imparts similar selective pressures across a range of yeast proteins. Molecular Biology and Evolution. 26: 1155-61. PMID 19233963 DOI: 10.1093/molbev/msp031  0.92
2008 Conant GC, Wolfe KH. Turning a hobby into a job: how duplicated genes find new functions. Nature Reviews. Genetics. 9: 938-50. PMID 19015656 DOI: 10.1038/nrg2482  1
2008 Conant GC, Wolfe KH. Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast. Genetics. 179: 1681-92. PMID 18562662 DOI: 10.1534/genetics.107.074450  1
2008 Powell AJ, Conant GC, Brown DE, Carbone I, Dean RA. Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens. Bmc Genomics. 9: 147. PMID 18373860 DOI: 10.1186/1471-2164-9-147  1
2008 Conant GC, Wolfe KH. GenomeVx: simple web-based creation of editable circular chromosome maps. Bioinformatics (Oxford, England). 24: 861-2. PMID 18227121 DOI: 10.1093/bioinformatics/btm598  1
2007 Conant GC, Wolfe KH. Increased glycolytic flux as an outcome of whole-genome duplication in yeast. Molecular Systems Biology. 3: 129. PMID 17667951 DOI: 10.1038/msb4100170  1
2007 Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH. Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proceedings of the National Academy of Sciences of the United States of America. 104: 8397-402. PMID 17494770 DOI: 10.1073/pnas.0608218104  1
2007 Conant GC, Wagner GP, Stadler PF. Modeling amino acid substitution patterns in orthologous and paralogous genes. Molecular Phylogenetics and Evolution. 42: 298-307. PMID 16942891 DOI: 10.1016/j.ympev.2006.07.006  0.92
2006 Conant GC, Wolfe KH. Functional partitioning of yeast co-expression networks after genome duplication. Plos Biology. 4: e109. PMID 16555924 DOI: 10.1371/journal.pbio.0040109  1
2005 Conant GC, Wagner A. The rarity of gene shuffling in conserved genes. Genome Biology. 6: R50. PMID 15960802 DOI: 10.1186/gb-2005-6-6-r50  0.96
2004 Conant GC, Wagner A. A fast algorithm for determining the best combination of local alignments to a query sequence. Bmc Bioinformatics. 5: 62. PMID 15149555 DOI: 10.1186/1471-2105-5-62  0.96
2004 Hahn MW, Conant GC, Wagner A. Molecular evolution in large genetic networks: does connectivity equal constraint? Journal of Molecular Evolution. 58: 203-11. PMID 15042341 DOI: 10.1007/s00239-003-2544-0  1
2004 Conant GC, Wagner A. Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans. Proceedings. Biological Sciences. 271: 89-96. PMID 15002776 DOI: 10.1098/rspb.2003.2560  0.96
2003 Conant GC, Wagner A. Asymmetric sequence divergence of duplicate genes. Genome Research. 13: 2052-8. PMID 12952876 DOI: 10.1101/gr.1252603  0.96
2003 Conant GC, Wagner A. Convergent evolution of gene circuits. Nature Genetics. 34: 264-6. PMID 12819781 DOI: 10.1038/ng1181  0.96
2002 Conant GC, Wagner A. GenomeHistory: a software tool and its application to fully sequenced genomes. Nucleic Acids Research. 30: 3378-86. PMID 12140322 DOI: 10.1093/nar/gkf449  0.96
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