Patrick Schnable - Publications

Agronomy Iowa State University, Ames, IA, United States 

192 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lin G, He C, Zheng J, Koo DH, Le H, Zheng H, Tamang TM, Lin J, Liu Y, Zhao M, Hao Y, McFraland F, Wang B, Qin Y, Tang H, ... ... Schnable PS, et al. Chromosome-level genome assembly of a regenerable maize inbred line A188. Genome Biology. 22: 175. PMID 34108023 DOI: 10.1186/s13059-021-02396-x  1
2021 Mural RV, Grzybowski M, Miao C, Damke A, Sapkota S, Boyles RE, Salas Fernandez MG, Schnable PS, Sigmon B, Kresovich S, Schnable JC. Meta-Analysis Identifies Pleiotropic Loci Controlling Phenotypic Trade-offs in Sorghum. Genetics. PMID 34100945 DOI: 10.1093/genetics/iyab087  0.92
2021 Zhou Y, Kusmec A, Mirnezami SV, Attigala L, Srinivasan S, Jubery TZ, Schnable JC, Fernandez MGS, Ganapathysubramanian B, Schnable PS. Identification and utilization of genetic determinants of trait measurement errors in image-based, high-throughput phenotyping. The Plant Cell. PMID 34015121 DOI: 10.1093/plcell/koab134  0.88
2021 Li D, Liu Q, Schnable PS. TWAS results are complementary to and less affected by linkage disequilibrium than GWAS. Plant Physiology. PMID 33823025 DOI: 10.1093/plphys/kiab161  0.92
2021 Mirnezami SV, Srinivasan S, Zhou Y, Schnable PS, Ganapathysubramanian B. Detection of the Progression of Anthesis in Field-Grown Maize Tassels: A Case Study. Plant Phenomics (Washington, D.C.). 2021: 4238701. PMID 33728412 DOI: 10.34133/2021/4238701  0.84
2021 Li X, Guo T, Wang J, Bekele W, Sukumaran S, Vanous AE, McNellie JP, Cortes LT, Lopes M, Lamkey KR, Westgate ME, McKay J, Archontoulis SV, Reynolds MP, Tinker N, ... Schnable PS, et al. An Integrated Framework Reinstating the Environmental Dimension for GWAS and Genomic Selection in Crops. Molecular Plant. PMID 33713844 DOI: 10.1016/j.molp.2021.03.010  0.92
2021 Rogers AR, Dunne JC, Romay C, Bohn M, Buckler ES, Ciampitti IA, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Hood E, Hooker DC, Knoll J, ... ... Schnable PS, et al. The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment. G3 (Bethesda, Md.). 11. PMID 33585867 DOI: 10.1093/g3journal/jkaa050  0.84
2020 Jarquin D, de Leon N, Romay C, Bohn M, Buckler ES, Ciampitti I, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, Hooker D, Kaeppler SM, ... ... Schnable PS, et al. Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project. Frontiers in Genetics. 11: 592769. PMID 33763106 DOI: 10.3389/fgene.2020.592769  0.84
2020 Mantilla-Perez MB, Bao Y, Tang L, Schnable PS, Salas-Fernandez MG. Towards "smart canopy" sorghum: discovery of the genetic control of leaf angle across layers. Plant Physiology. PMID 33093232 DOI: 10.1104/pp.20.00632  0.88
2020 Li J, Li D, Zavala Espinosa C, Trejo Pastor V, Rasheed A, Palacios Rojas N, Wang J, Santacruz Varela A, Carolina de Almeida Silva N, Schnable PS, Costich DE, Li H. Genome-wide analyses reveal footprints of divergent selection and popping-related traits in CIMMYT's maize inbred lines. Journal of Experimental Botany. PMID 33070191 DOI: 10.1093/jxb/eraa480  1
2020 Li Z, Tirado SB, Kadam DC, Coffey L, Miller ND, Spalding EP, Lorenz AJ, de Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Characterizing introgression-by-environment interactions using maize near isogenic lines. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 32572549 DOI: 10.1007/S00122-020-03630-Z  0.8
2020 Moeinizade S, Kusmec A, Hu G, Wang L, Schnable PS. Multi-trait Genomic Selection Methods for Crop Improvement. Genetics. PMID 32482640 DOI: 10.1534/Genetics.120.303305  0.92
2020 Miao C, Xu Y, Liu S, Schnable PS, Schnable J. Increased power and accuracy of causal locus identification in time-series genome-wide association in sorghum. Plant Physiology. PMID 32461303 DOI: 10.1104/Pp.20.00277  1
2020 Yu X, Leiboff S, Li X, Guo T, Ronning N, Zhang X, Muehlbauer GJ, Timmermans MCP, Schnable PS, Scanlon MJ, Yu J. Genomic Prediction of Maize Micro-Phenotypes Provides Insights for Optimizing Selection and Mining Diversity. Plant Biotechnology Journal. PMID 32452105 DOI: 10.1111/Pbi.13420  1
2020 McFarland BA, AlKhalifah N, Bohn M, Bubert J, Buckler ES, Ciampitti I, Edwards J, Ertl D, Gage JL, Falcon CM, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, ... ... Schnable PS, et al. Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets. Bmc Research Notes. 13: 71. PMID 32051026 DOI: 10.1186/S13104-020-4922-8  0.84
2019 Moeinizade S, Hu G, Wang L, Schnable PS. Optimizing Selection and Mating in Genomic Selection with a Look-Ahead Approach: An Operations Research Framework. G3 (Bethesda, Md.). 9: 2123-2133. PMID 33877341 DOI: 10.1534/g3.118.200842  0.92
2019 Knauer S, Javelle M, Li L, Li X, Ma X, Wimalanathan K, Kumari S, Johnston R, Leiboff S, Meeley R, Schnable PS, Ware D, Lawrence-Dill C, Yu J, Muehlbauer GJ, et al. A high-resolution gene expression atlas links dedicated meristem genes to key architectural traits. Genome Research. PMID 31744902 DOI: 10.1101/Gr.250878.119  1
2019 Zheng Z, Hey S, Jubery T, Liu H, Yang Y, Coffey L, Miao C, Sigmon B, Schnable J, Hochholdinger F, Ganapathysubramanian B, Schnable PS. Shared genetic control of root system architecture between Zea mays and Sorghum bicolor. Plant Physiology. PMID 31740504 DOI: 10.1104/Pp.19.00752  0.92
2019 Li M, Cao L, Mwimba M, Zhou Y, Li L, Zhou M, Schnable PS, O'Rourke JA, Dong X, Wang W. Comprehensive mapping of abiotic stress inputs into the soybean circadian clock. Proceedings of the National Academy of Sciences of the United States of America. PMID 31676549 DOI: 10.1073/Pnas.1708508116  1
2019 Li Z, Coffey L, Garfin J, Miller ND, White MR, Spalding EP, Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Correction: Genotype-by-environment interactions affecting heterosis in maize. Plos One. 14: e0219528. PMID 31381609 DOI: 10.1371/Journal.Pone.0219528  0.8
2019 Ali MA, Wang X, Chen Y, Jiao Y, Mahal NK, Moru S, Castellano MJ, Schnable JC, Schnable P, Dong L. Continuous Monitoring of Soil Nitrate Using a Miniature Sensor with Poly(3-octyl-thiophene) and Molybdenum Disulfide Nanocomposite. Acs Applied Materials & Interfaces. PMID 31318522 DOI: 10.1021/Acsami.9B07120  0.84
2019 Li J, Chen GB, Rasheed A, Li D, Sonder K, Zavala Espinosa C, Wang J, Costich DE, Schnable PS, Hearne SJ, Li H. Identifying loci with breeding potential across temperate and tropical adaptation via EigenGWAS and EnvGWAS. Molecular Ecology. PMID 31287919 DOI: 10.1111/Mec.15169  1
2019 Li YH, Li D, Jiao YQ, Schnable JC, Li YF, Li HH, Chen HZ, Hong HL, Zhang T, Liu B, Liu ZX, You QB, Tian Y, Guo Y, Guan RX, ... ... Schnable PS, et al. Identification of Loci Controlling Adaptation in Chinese Soybean Landraces via a Combination of Conventional and Bioclimatic GWAS. Plant Biotechnology Journal. PMID 31278885 DOI: 10.1111/Pbi.13206  0.92
2019 Moeinizade S, Hu G, Wang L, Schnable PS. Optimizing Selection and Mating in Genomic Selection with a Look-Ahead Approach: An Operations Research Framework. G3 (Bethesda, Md.). PMID 31109922 DOI: 10.1534/G3.118.200842  0.92
2019 Li L, Du Y, He C, Dietrich CR, Li J, Ma X, Wang R, Liu Q, Liu S, Wang G, Schnable PS, Zheng J. The maize glossy6 gene is involved in cuticular wax deposition and drought tolerance. Journal of Experimental Botany. PMID 30919902 DOI: 10.1093/Jxb/Erz131  1
2019 Moehs CP, Austill WJ, Holm AP, Large TAG, Loeffler DP, Mullenberg JC, Schnable PS, Skinner W, van Boxtel J, Wu L, McGuire C. Development of decreased-gluten wheat enabled by determination of the genetic basis of lys3a barley. Plant Physiology. PMID 30696748 DOI: 10.1104/pp.18.00771  0.76
2019 Zou C, Li L, Miki D, Li D, Tang Q, Xiao L, Rajput S, Deng P, Peng L, Jia W, Huang R, Zhang M, Sun Y, Hu J, Fu X, ... Schnable PS, et al. The genome of broomcorn millet. Nature Communications. 10: 436. PMID 30683860 DOI: 10.1038/S41467-019-08409-5  1
2018 Kusmec A, Schnable PS. FarmCPUpp: Efficient large-scale genomewide association studies. Plant Direct. 2: e00053. PMID 31245719 DOI: 10.1002/pld3.53  0.88
2018 Zhou Y, Srinivasan S, Mirnezami SV, Kusmec A, Fu Q, Attigala L, Salas Fernandez MG, Ganapathysubramanian B, Schnable PS. Semi-automated feature extraction from RGB images for sorghum panicle architecture GWAS. Plant Physiology. PMID 30389784 DOI: 10.1104/Pp.18.00974  0.88
2018 Zheng J, He C, Qin Y, Lin G, Park WD, Sun M, Li J, Lu X, Zhang C, Yeh CT, Gunasekara CJ, Zeng E, Wei H, Schnable PS, Wang G, et al. Co-expression Analysis Aids in the Identification of Genes in the Cuticular Wax Pathway in Maize. The Plant Journal : For Cell and Molecular Biology. PMID 30375131 DOI: 10.1111/Tpj.14140  1
2018 Liang Y, Liu Q, Wang X, Huang C, Xu G, Hey S, Lin HY, Li C, Xu D, Wu L, Wang C, Wu W, Xia J, Han X, Lu S, ... ... Schnable PS, et al. ZmMADS69 functions as a flowering activator through the ZmRap2.7-ZCN8 regulatory module and contributes to maize flowering time adaptation. The New Phytologist. PMID 30288760 DOI: 10.1111/Nph.15512  0.92
2018 Kusmec A, de Leon N, Schnable PS. Harnessing Phenotypic Plasticity to Improve Maize Yields. Frontiers in Plant Science. 9: 1377. PMID 30283485 DOI: 10.3389/fpls.2018.01377  0.88
2018 Guo H, Nolan TM, Song G, Liu S, Xie Z, Chen J, Schnable PS, Walley JW, Yin Y. FERONIA Receptor Kinase Contributes to Plant Immunity by Suppressing Jasmonic Acid Signaling in Arabidopsis thaliana. Current Biology : Cb. PMID 30270181 DOI: 10.1016/J.Cub.2018.07.078  1
2018 Yang J, Yeh CE, Kastoori Ramamurthy R, Qi X, Fernando RL, Dekkers JCM, Garrick DJ, Nettleton D, Schnable PS. Empirical Comparisons of Different Statistical Models To Identify and Validate Kernel Row Number-Associated Variants from Structured Multi-parent Mapping Populations of Maize. G3 (Bethesda, Md.). PMID 30213868 DOI: 10.1534/G3.118.200636  0.92
2018 Liu S, Schnable JC, Ott A, Eddy Yeh CT, Springer NM, Yu J, Muehlbauer G, Timmermans MCP, Scanlon MJ, Schnable PS. Intragenic Meiotic Crossovers Generate Novel Alleles with Transgressive Expression Levels. Molecular Biology and Evolution. PMID 30184112 DOI: 10.1093/Molbev/Msy174  1
2018 Ott A, Schnable JC, Yeh CT, Wu L, Liu C, Hu HC, Dalgard CL, Sarkar S, Schnable PS. Linked read technology for assembling large complex and polyploid genomes. Bmc Genomics. 19: 651. PMID 30180802 DOI: 10.1186/S12864-018-5040-Z  0.84
2018 Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MMS, Scanlon MJ, Yu J, Schnable PS, Timmermans MCP, et al. Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology. 19: 122. PMID 30134966 DOI: 10.1186/S13059-018-1508-Z  1
2018 Sun S, Zhou Y, Chen J, Shi J, Zhao H, Zhao H, Song W, Zhang M, Cui Y, Dong X, Liu H, Ma X, Jiao Y, Wang B, Wei X, ... ... Schnable PS, et al. Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes. Nature Genetics. PMID 30061735 DOI: 10.1038/S41588-018-0182-0  0.92
2018 Ali J, Aslam UM, Tariq R, Murugaiyan V, Schnable PS, Li D, Marfori-Nazarea CM, Hernandez JE, Arif M, Xu J, Li Z. Exploiting the Genomic Diversity of Rice ( L.): SNP-Typing in 11 Early-Backcross Introgression-Breeding Populations. Frontiers in Plant Science. 9: 849. PMID 29988489 DOI: 10.3389/Fpls.2018.00849  0.92
2018 AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, ... ... Schnable PS, et al. Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets. Bmc Research Notes. 11: 452. PMID 29986751 DOI: 10.1186/S13104-018-3508-1  0.84
2018 Liang Z, Gupta SK, Yeh CT, Zhang Y, Ngu DW, Kumar R, Patil HT, Mungra KD, Yadav DV, Rathore A, Srivastava RK, Gupta R, Yang J, Varshney RK, Schnable PS, et al. Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids. G3 (Bethesda, Md.). PMID 29794163 DOI: 10.1534/G3.118.200242  0.92
2018 Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MCP, Springer NM, Muehlbauer GJ. Correction: Mendelian and Non-Mendelian Regulation of Gene Expression in Maize. Plos Genetics. 14: e1007234. PMID 29444085 DOI: 10.1371/Journal.Pgen.1007234  1
2018 Li Z, Coffey L, Garfin J, Miller ND, White MR, Spalding EP, de Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Genotype-by-environment interactions affecting heterosis in maize. Plos One. 13: e0191321. PMID 29342221 DOI: 10.1371/Journal.Pone.0191321  0.8
2017 Chen L, Zhang P, Fan Y, Lu Q, Li Q, Yan J, Muehlbauer GJ, Schnable PS, Dai M, Li L. Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize. The New Phytologist. PMID 29155438 DOI: 10.1111/Nph.14901  1
2017 Kusmec A, Srinivasan S, Nettleton D, Schnable PS. Distinct genetic architectures for phenotype means and plasticities in Zea mays. Nature Plants. 3: 715-723. PMID 29150689 DOI: 10.1038/S41477-017-0007-7  0.92
2017 Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, ... ... Schnable PS, et al. The effect of artificial selection on phenotypic plasticity in maize. Nature Communications. 8: 1348. PMID 29116144 DOI: 10.1038/S41467-017-01450-2  0.92
2017 Lin HY, Liu Q, Li X, Yang J, Liu S, Huang Y, Scanlon MJ, Nettleton D, Schnable PS. Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS. Genome Biology. 18: 192. PMID 29041960 DOI: 10.1186/S13059-017-1328-6  1
2017 Ott A, Liu S, Schnable JC, Yeh C', Wang KS, Schnable PS. tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci. Nucleic Acids Research. PMID 29036322 DOI: 10.1093/Nar/Gkx853  1
2017 Salas Fernandez MG, Bao Y, Tang L, Schnable PS. A high-throughput, field-based phenotyping technology for tall biomass crops. Plant Physiology. PMID 28620124 DOI: 10.1104/Pp.17.00707  0.88
2017 Mei W, Liu S, Schnable JC, Yeh CT, Springer NM, Schnable PS, Barbazuk WB. A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize. Frontiers in Plant Science. 8: 694. PMID 28539927 DOI: 10.3389/Fpls.2017.00694  1
2017 Goiffon M, Kusmec A, Wang L, Hu G, Schnable P. Improving Response in Genomic Selection with a Population-Based Selection Strategy: Optimal Population Value Selection. Genetics. PMID 28526698 DOI: 10.1534/Genetics.116.197103  0.92
2017 Ye H, Liu S, Tang B, Chen J, Xie Z, Nolan TM, Jiang H, Guo H, Lin HY, Li L, Wang Y, Tong H, Zhang M, Chu C, Li Z, ... ... Schnable PS, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nature Communications. 8: 14573. PMID 28233777 DOI: 10.1038/Ncomms14573  1
2017 Nolan T, Liu S, Guo H, Li L, Schnable P, Yin Y. Identification of Brassinosteroid Target Genes by Chromatin Immunoprecipitation Followed by High-Throughput Sequencing (ChIP-seq) and RNA-Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1564: 63-79. PMID 28124247 DOI: 10.1007/978-1-4939-6813-8_7  1
2016 Li L, Briskine R, Schaefer R, Schnable PS, Myers CL, Flagel LE, Springer NM, Muehlbauer GJ. Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias. Bmc Genomics. 17: 875. PMID 27814670 DOI: 10.1186/S12864-016-3194-0  1
2016 Li L, Hey S, Liu S, Liu Q, McNinch C, Hu HC, Wen TJ, Marcon C, Paschold A, Bruce W, Schnable PS, Hochholdinger F. Characterization of maize roothairless6 which encodes a D-type cellulose synthase and controls the switch from bulge formation to tip growth. Scientific Reports. 6: 34395. PMID 27708345 DOI: 10.1038/Srep34395  1
2016 Yu X, Li X, Guo T, Zhu C, Wu Y, Mitchell SE, Roozeboom KL, Wang D, Wang ML, Pederson GA, Tesso TT, Schnable PS, Bernardo R, Yu J. Genomic prediction contributing to a promising global strategy to turbocharge gene banks. Nature Plants. 2: 16150. PMID 27694945 DOI: 10.1038/Nplants.2016.150  1
2015 Leiboff S, Li X, Hu HC, Todt N, Yang J, Li X, Yu X, Muehlbauer GJ, Timmermans MC, Yu J, Schnable PS, Scanlon MJ. Genetic control of morphometric diversity in the maize shoot apical meristem. Nature Communications. 6: 8974. PMID 26584889 DOI: 10.1038/Ncomms9974  1
2015 Chandran D, Scanlon MJ, Ohtsu K, Timmermans MC, Schnable PS, Wildermuth MC. Laser Microdissection-Mediated Isolation and In Vitro Transcriptional Amplification of Plant RNA. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 112: 25A.3.1-25A.3.23. PMID 26423587 DOI: 10.1002/0471142727.Mb25A03S112  1
2015 Yang J, Jiang H, Yeh CT, Yu J, Jeddeloh JA, Nettleton D, Schnable PS. Extreme Phenotype-Genome-Wide Association Study (XP-GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel. The Plant Journal : For Cell and Molecular Biology. PMID 26386250 DOI: 10.1111/Tpj.13029  0.92
2015 Zhang Y, Paschold A, Marcon C, Liu S, Tai H, Nestler J, Yeh CT, Opitz N, Lanz C, Schnable PS, Hochholdinger F. The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots. Journal of Experimental Botany. 66: 6081. PMID 26208643 DOI: 10.1093/jxb/erv354  1
2015 Mester D, Ronin Y, Schnable P, Aluru S, Korol A. Fast and accurate construction of ultra-dense consensus genetic maps using evolution strategy optimization. Plos One. 10: e0122485. PMID 25867943 DOI: 10.1371/Journal.Pone.0122485  1
2015 Thompson AM, Yu J, Timmermans MC, Schnable P, Crants JC, Scanlon MJ, Muehlbauer GJ. Diversity of maize shoot apical meristem architecture and its relationship to plant morphology. G3 (Bethesda, Md.). 5: 819-27. PMID 25748433 DOI: 10.1534/G3.115.017541  1
2015 Tang H, Zhang X, Miao C, Zhang J, Ming R, Schnable JC, Schnable PS, Lyons E, Lu J. ALLMAPS: robust scaffold ordering based on multiple maps. Genome Biology. 16: 3. PMID 25583564 DOI: 10.1186/S13059-014-0573-1  0.92
2015 Li L, Hill-Skinner S, Liu S, Beuchle D, Tang HM, Yeh CT, Nettleton D, Schnable PS. The maize brown midrib4 (bm4) gene encodes a functional folylpolyglutamate synthase. The Plant Journal : For Cell and Molecular Biology. 81: 493-504. PMID 25495051 DOI: 10.1111/Tpj.12745  1
2014 Paschold A, Larson NB, Marcon C, Schnable JC, Yeh CT, Lanz C, Nettleton D, Piepho HP, Schnable PS, Hochholdinger F. Nonsyntenic genes drive highly dynamic complementation of gene expression in maize hybrids. The Plant Cell. 26: 3939-48. PMID 25315323 DOI: 10.1105/Tpc.114.130948  1
2014 Zhang Y, Paschold A, Marcon C, Liu S, Tai H, Nestler J, Yeh CT, Opitz N, Lanz C, Schnable PS, Hochholdinger F. The Aux/IAA gene rum1 involved in seminal and lateral root formation controls vascular patterning in maize (Zea mays L.) primary roots. Journal of Experimental Botany. 65: 4919-30. PMID 24928984 DOI: 10.1093/Jxb/Eru249  1
2014 Nestler J, Liu S, Wen TJ, Paschold A, Marcon C, Tang HM, Li D, Li L, Meeley RB, Sakai H, Bruce W, Schnable PS, Hochholdinger F. Roothairless5, which functions in maize (Zea mays L.) root hair initiation and elongation encodes a monocot-specific NADPH oxidase. The Plant Journal : For Cell and Molecular Biology. 79: 729-40. PMID 24902980 DOI: 10.1111/Tpj.12578  1
2014 Thompson AM, Crants J, Schnable PS, Yu J, Timmermans MC, Springer NM, Scanlon MJ, Muehlbauer GJ. Genetic control of maize shoot apical meristem architecture. G3 (Bethesda, Md.). 4: 1327-37. PMID 24855316 DOI: 10.1534/G3.114.011940  1
2014 Wang X, Chen J, Xie Z, Liu S, Nolan T, Ye H, Zhang M, Guo H, Schnable PS, Li Z, Yin Y. Histone lysine methyltransferase SDG8 is involved in brassinosteroid-regulated gene expression in Arabidopsis thaliana. Molecular Plant. 7: 1303-15. PMID 24838002 DOI: 10.1093/Mp/Ssu056  1
2014 Cai W, Wang C, Li Y, Yao C, Shen L, Liu S, Bao X, Schnable PS, Girton J, Johansen J, Johansen KM. Genome-wide analysis of regulation of gene expression and H3K9me2 distribution by JIL-1 kinase mediated histone H3S10 phosphorylation in Drosophila. Nucleic Acids Research. 42: 5456-67. PMID 24598257 DOI: 10.1093/Nar/Gku173  1
2014 Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MM, Scanlon MJ, Yu J, Schnable PS, Timmermans MC, et al. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology. 15: R40. PMID 24576388 DOI: 10.1186/Gb-2014-15-2-R40  1
2014 Tang HM, Liu S, Hill-Skinner S, Wu W, Reed D, Yeh CT, Nettleton D, Schnable PS. The maize brown midrib2 (bm2) gene encodes a methylenetetrahydrofolate reductase that contributes to lignin accumulation. The Plant Journal : For Cell and Molecular Biology. 77: 380-92. PMID 24286468 DOI: 10.1111/Tpj.12394  1
2013 Li L, Li D, Liu S, Ma X, Dietrich CR, Hu HC, Zhang G, Liu Z, Zheng J, Wang G, Schnable PS. The maize glossy13 gene, cloned via BSR-Seq and Seq-walking encodes a putative ABC transporter required for the normal accumulation of epicuticular waxes. Plos One. 8: e82333. PMID 24324772 DOI: 10.1371/Journal.Pone.0082333  1
2013 Liu S, Hsia AP, Schnable PS. Digestion-ligation-amplification (DLA): a simple genome walking method to amplify unknown sequences flanking mutator (Mu) transposons and thereby facilitate gene cloning. Methods in Molecular Biology (Clifton, N.J.). 1057: 167-76. PMID 23918428 DOI: 10.1007/978-1-62703-568-2_12  1
2013 Muthreich N, Majer C, Beatty M, Paschold A, Schützenmeister A, Fu Y, Malik WA, Schnable PS, Piepho HP, Sakai H, Hochholdinger F. Comparative transcriptome profiling of maize coleoptilar nodes during shoot-borne root initiation. Plant Physiology. 163: 419-30. PMID 23843603 DOI: 10.1104/Pp.113.221481  1
2013 Schnable PS, Springer NM. Progress toward understanding heterosis in crop plants. Annual Review of Plant Biology. 64: 71-88. PMID 23394499 DOI: 10.1146/Annurev-Arplant-042110-103827  1
2013 Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ. Mendelian and non-Mendelian regulation of gene expression in maize. Plos Genetics. 9: e1003202. PMID 23341782 DOI: 10.1371/Journal.Pgen.1003202  1
2013 Soltis DE, Gitzendanner MA, Stull G, Chester M, Chanderbali A, Jordon-Thaden I, Chamala S, Soltis PS, Schnable PS, Brad Barbazuk W. The potential of genomics in plant systematics Taxon. 62: 886-898. DOI: 10.12705/625.13  1
2013 Soltis DE, Buggs RJA, Barbazuk WB, Chamala S, Chester M, Gallagher JP, Schnable PS, Soltis PS. The early stages of polyploidy: Rapid and repeated evolution in Tragopogon Polyploidy and Genome Evolution. 271-292. DOI: 10.1007/978-3-642-31442-1_14  1
2012 Eichten SR, Ellis NA, Makarevitch I, Yeh CT, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW, Dawe RK, Springer NM. Spreading of heterochromatin is limited to specific families of maize retrotransposons. Plos Genetics. 8: e1003127. PMID 23271981 DOI: 10.1371/Journal.Pgen.1003127  1
2012 Paschold A, Jia Y, Marcon C, Lund S, Larson NB, Yeh CT, Ossowski S, Lanz C, Nettleton D, Schnable PS, Hochholdinger F. Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents. Genome Research. 22: 2445-54. PMID 23086286 DOI: 10.1101/Gr.138461.112  1
2012 Takacs EM, Li J, Du C, Ponnala L, Janick-Buckner D, Yu J, Muehlbauer GJ, Schnable PS, Timmermans MC, Sun Q, Nettleton D, Scanlon MJ. Ontogeny of the maize shoot apical meristem. The Plant Cell. 24: 3219-34. PMID 22911570 DOI: 10.1105/Tpc.112.099614  1
2012 Liu S, Ying K, Yeh CT, Yang J, Swanson-Wagner R, Wu W, Richmond T, Gerhardt DJ, Lai J, Springer N, Nettleton D, Jeddeloh JA, Schnable PS. Changes in genome content generated via segregation of non-allelic homologs. The Plant Journal : For Cell and Molecular Biology. 72: 390-9. PMID 22731681 DOI: 10.1111/J.1365-313X.2012.05087.X  1
2012 Li X, Zhu C, Yeh CT, Wu W, Takacs EM, Petsch KA, Tian F, Bai G, Buckler ES, Muehlbauer GJ, Timmermans MC, Scanlon MJ, Schnable PS, Yu J. Genic and nongenic contributions to natural variation of quantitative traits in maize. Genome Research. 22: 2436-44. PMID 22701078 DOI: 10.1101/Gr.140277.112  1
2012 Ronin Y, Mester D, Minkov D, Belotserkovski R, Jackson BN, Schnable PS, Aluru S, Korol A. Two-phase analysis in consensus genetic mapping. G3 (Bethesda, Md.). 2: 537-49. PMID 22670224 DOI: 10.1534/g3.112.002428  1
2012 Zhang X, Douglas RN, Strable J, Lee M, Buckner B, Janick-Buckner D, Schnable PS, Timmermans MC, Scanlon MJ. Punctate vascular expression1 is a novel maize gene required for leaf pattern formation that functions downstream of the trans-acting small interfering RNA pathway. Plant Physiology. 159: 1453-62. PMID 22669891 DOI: 10.1104/pp.111.192419  1
2012 Liu S, Yeh CT, Tang HM, Nettleton D, Schnable PS. Gene mapping via bulked segregant RNA-Seq (BSR-Seq). Plos One. 7: e36406. PMID 22586469 DOI: 10.1371/Journal.Pone.0036406  1
2012 Lin Z, Li X, Shannon LM, Yeh CT, Wang ML, Bai G, Peng Z, Li J, Trick HN, Clemente TE, Doebley J, Schnable PS, Tuinstra MR, Tesso TT, White F, et al. Parallel domestication of the Shattering1 genes in cereals. Nature Genetics. 44: 720-4. PMID 22581231 DOI: 10.1038/Ng.2281  1
2012 Buggs RJ, Renny-Byfield S, Chester M, Jordon-Thaden IE, Viccini LF, Chamala S, Leitch AR, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE. Next-generation sequencing and genome evolution in allopolyploids. American Journal of Botany. 99: 372-82. PMID 22268220 DOI: 10.3732/Ajb.1100395  1
2012 Buggs RJ, Chamala S, Wu W, Tate JA, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB. Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin. Current Biology : Cb. 22: 248-52. PMID 22264605 DOI: 10.1016/J.Cub.2011.12.027  1
2011 Waters AJ, Makarevitch I, Eichten SR, Swanson-Wagner RA, Yeh CT, Xu W, Schnable PS, Vaughn MW, Gehring M, Springer NM. Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. The Plant Cell. 23: 4221-33. PMID 22198147 DOI: 10.1105/Tpc.111.092668  1
2011 Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. Heritable epigenetic variation among maize inbreds. Plos Genetics. 7: e1002372. PMID 22125494 DOI: 10.1371/Journal.Pgen.1002372  1
2011 Eichten SR, Foerster JM, de Leon N, Kai Y, Yeh CT, Liu S, Jeddeloh JA, Schnable PS, Kaeppler SM, Springer NM. B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiology. 156: 1679-90. PMID 21705654 DOI: 10.1104/Pp.111.174748  1
2011 Buggs RJ, Zhang L, Miles N, Tate JA, Gao L, Wei W, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE. Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant. Current Biology : Cb. 21: 551-6. PMID 21419627 DOI: 10.1016/J.Cub.2011.02.016  1
2011 Barbazuk WB, Schnable PS. SNP discovery by transcriptome pyrosequencing. Methods in Molecular Biology (Clifton, N.J.). 729: 225-46. PMID 21365494 DOI: 10.1007/978-1-61779-065-2_15  0.8
2011 Koesterke L, Stanzione D, Vaughn M, Welch SM, Kusnierczyk W, Yang J, Yeh CT, Nettleton D, Schnable PS. An efficient and scalable implementation of SNP-pair interaction testing for genetic association studies Ieee International Symposium On Parallel and Distributed Processing Workshops and Phd Forum. 523-530. DOI: 10.1109/IPDPS.2011.190  1
2010 Fu Y, Springer NM, Ying K, Yeh CT, Iniguez AL, Richmond T, Wu W, Barbazuk B, Nettleton D, Jeddeloh J, Schnable PS. High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes. Plos One. 5: e14178. PMID 21152036 DOI: 10.1371/Journal.Pone.0014178  1
2010 Hsia AP, Chen HD, Ohtsu K, Schnable PS. DNA extraction from freeze-dried plant tissue with CTAB in a 96-well format. Cold Spring Harbor Protocols. 2010: pdb.prot5516. PMID 21041389 DOI: 10.1101/Pdb.Prot5516  1
2010 Lai J, Li R, Xu X, Jin W, Xu M, Zhao H, Xiang Z, Song W, Ying K, Zhang M, Jiao Y, Ni P, Zhang J, Li D, Guo X, ... ... Schnable PS, et al. Genome-wide patterns of genetic variation among elite maize inbred lines. Nature Genetics. 42: 1027-30. PMID 20972441 DOI: 10.1038/Ng.684  1
2010 Buggs RJ, Chamala S, Wu W, Gao L, May GD, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB. Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping. Molecular Ecology. 19: 132-46. PMID 20331776 DOI: 10.1111/J.1365-294X.2009.04469.X  1
2010 Fu Y, Springer NM, Gerhardt DJ, Ying K, Yeh CT, Wu W, Swanson-Wagner R, D'Ascenzo M, Millard T, Freeberg L, Aoyama N, Kitzman J, Burgess D, Richmond T, Albert TJ, ... ... Schnable PS, et al. Repeat subtraction-mediated sequence capture from a complex genome. The Plant Journal : For Cell and Molecular Biology. 62: 898-909. PMID 20230488 DOI: 10.1111/J.1365-313X.2010.04196.X  1
2010 Liu S, Chen HD, Makarevitch I, Shirmer R, Emrich SJ, Dietrich CR, Barbazuk WB, Springer NM, Schnable PS. High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics. 184: 19-26. PMID 19884313 DOI: 10.1534/Genetics.109.107557  1
2010 Travers SE, Tang Z, Caragea D, Garrett KA, Hulbert SH, Leach JE, Bai J, Saleh A, Knapp AK, Fay PA, Nippert J, Schnable PS, Smith MD. Variation in gene expression of Andropogon gerardii in response to altered environmental conditions associated with climate change Journal of Ecology. 98: 374-383. DOI: 10.1111/J.1365-2745.2009.01618.X  1
2009 Swanson-Wagner RA, DeCook R, Jia Y, Bancroft T, Ji T, Zhao X, Nettleton D, Schnable PS. Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science (New York, N.Y.). 326: 1118-20. PMID 19965432 DOI: 10.1126/Science.1178294  1
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534  1
2009 Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS. Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. Plos Genetics. 5: e1000734. PMID 19956538 DOI: 10.1371/Journal.Pgen.1000734  1
2009 Jia Y, Lisch DR, Ohtsu K, Scanlon MJ, Nettleton D, Schnable PS. Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. Plos Genetics. 5: e1000737. PMID 19936292 DOI: 10.1371/Journal.Pgen.1000737  1
2009 Liu S, Yeh CT, Ji T, Ying K, Wu H, Tang HM, Fu Y, Nettleton D, Schnable PS. Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome. Plos Genetics. 5: e1000733. PMID 19936291 DOI: 10.1371/Journal.Pgen.1000733  1
2009 Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, et al. The physical and genetic framework of the maize B73 genome. Plos Genetics. 5: e1000715. PMID 19936061 DOI: 10.1371/Journal.Pgen.1000715  1
2009 Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, ... ... Schnable PS, et al. Detailed analysis of a contiguous 22-Mb region of the maize genome. Plos Genetics. 5: e1000728. PMID 19936048 DOI: 10.1371/Journal.Pgen.1000728  1
2009 Chou HH, Trisiriroj A, Park S, Hsing YI, Ronald PC, Schnable PS. Direct calibration of PICKY-designed microarrays. Bmc Bioinformatics. 10: 347. PMID 19849862 DOI: 10.1186/1471-2105-10-347  0.8
2009 Liu S, Dietrich CR, Schnable PS. DLA-based strategies for cloning insertion mutants: cloning the gl4 locus of maize using Mu transposon tagged alleles. Genetics. 183: 1215-25. PMID 19805815 DOI: 10.1534/Genetics.109.108936  1
2009 Soltis DE, Buggs RJ, Barbazuk WB, Schnable PS, Soltis PS. On the origins of species: does evolution repeat itself in polyploid populations of independent origin? Cold Spring Harbor Symposia On Quantitative Biology. 74: 215-23. PMID 19687140 DOI: 10.1101/Sqb.2009.74.007  1
2009 Scanlon MJ, Ohtsu K, Timmermans MC, Schnable PS. Laser microdissection-mediated isolation and in vitro transcriptional amplification of plant RNA. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 25A.3. PMID 19575479 DOI: 10.1002/0471142727.mb25a03s87  1
2009 Brooks L, Strable J, Zhang X, Ohtsu K, Zhou R, Sarkar A, Hargreaves S, Elshire RJ, Eudy D, Pawlowska T, Ware D, Janick-Buckner D, Buckner B, Timmermans MCP, Schnable PS, et al. Microdissection of shoot meristem functional domains Plos Genetics. 5. PMID 19424435 DOI: 10.1371/Journal.Pgen.1000476  1
2009 Wei Y, Lin M, Oliver DJ, Schnable PS. The roles of aldehyde dehydrogenases (ALDHs) in the PDH bypass of Arabidopsis. Bmc Biochemistry. 10: 7. PMID 19320993 DOI: 10.1186/1471-2091-10-7  1
2009 Jackson BG, Schnable PS, Aluru S. Parallel short sequence assembly of transcriptomes. Bmc Bioinformatics. 10: S14. PMID 19208113 DOI: 10.1186/1471-2105-10-S1-S14  0.68
2009 Nogueira FT, Chitwood DH, Madi S, Ohtsu K, Schnable PS, Scanlon MJ, Timmermans MC. Regulation of small RNA accumulation in the maize shoot apex. Plos Genetics. 5: e1000320. PMID 19119413 DOI: 10.1371/Journal.Pgen.1000320  1
2009 Shimizu R, Ji J, Kelsey E, Ohtsu K, Schnable PS, Scanlon MJ. Tissue specificity and evolution of meristematic WOX3 function. Plant Physiology. 149: 841-50. PMID 19073779 DOI: 10.1104/pp.108.130765  1
2008 Skibbe DS, Wang X, Borsuk LA, Ashlock DA, Nettleton D, Schnable PS. Floret-specific differences in gene expression and support for the hypothesis that tapetal degeneration of Zea mays L. occurs via programmed cell death. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 35: 603-16. PMID 18937917 DOI: 10.1016/S1673-8527(08)60081-8  1
2008 Jung KH, Dardick C, Bartley LE, Cao P, Phetsom J, Canlas P, Seo YS, Shultz M, Ouyang S, Yuan Q, Frank BC, Ly E, Zheng L, Jia Y, Hsia AP, ... ... Schnable PS, et al. Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy. Plos One. 3: e3337. PMID 18836531 DOI: 10.1371/Journal.Pone.0003337  1
2008 Strable J, Borsuk L, Nettleton D, Schnable PS, Irish EE. Microarray analysis of vegetative phase change in maize. The Plant Journal : For Cell and Molecular Biology. 56: 1045-57. PMID 18764925 DOI: 10.1111/J.1365-313X.2008.03661.X  1
2008 Lu R, Lee GC, Shultz M, Dardick C, Jung K, Phetsom J, Jia Y, Rice RH, Goldberg Z, Schnable PS, Ronald P, Rocke DM. Assessing probe-specific dye and slide biases in two-color microarray data. Bmc Bioinformatics. 9: 314. PMID 18638416 DOI: 10.1186/1471-2105-9-314  1
2008 Jackson BN, Schnable PS, Aluru S. Consensus genetic maps as median orders from inconsistent sources. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 5: 161-71. PMID 18451426 DOI: 10.1109/TCBB.2007.70221  0.68
2008 Buckner B, Swaggart KA, Wong CC, Smith HA, Aurand KM, Scanlon MJ, Schnable PS, Janick-Buckner D. Expression and nucleotide diversity of the maize RIK gene. The Journal of Heredity. 99: 407-16. PMID 18310068 DOI: 10.1093/jhered/esn013  1
2008 Hochholdinger F, Wen TJ, Zimmermann R, Chimot-Marolle P, da Costa e Silva O, Bruce W, Lamkey KR, Wienand U, Schnable PS. The maize (Zea mays L.) roothairless 3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield. The Plant Journal : For Cell and Molecular Biology. 54: 888-98. PMID 18298667 DOI: 10.1111/J.1365-313X.2008.03459.X  1
2008 Li J, Wen TJ, Schnable PS. Role of RAD51 in the repair of MuDR-induced double-strand breaks in maize (Zea mays L.). Genetics. 178: 57-66. PMID 18202358 DOI: 10.1534/Genetics.107.080374  1
2007 Barbazuk WB, Emrich S, Schnable PS. SNP Mining from Maize 454 EST Sequences. Csh Protocols. 2007: pdb.prot4786. PMID 21357124 DOI: 10.1101/Pdb.Prot4786  0.8
2007 Ohtsu K, Schnable PS. T7-based RNA amplification for genotyping from maize shoot apical meristem. Csh Protocols. 2007: pdb.prot4785. PMID 21357123 DOI: 10.1101/pdb.prot4785  0.64
2007 Ohtsu K, Schnable PS. Maize tissue preparation and extraction of RNA from target cells for genotyping. Csh Protocols. 2007: pdb.prot4784. PMID 21357122 DOI: 10.1101/pdb.prot4784  0.64
2007 Hsia AP, Chen HD, Schnable PS. Temperature Gradient Capillary Electrophoresis (TGCE) Assay. Csh Protocols. 2007: pdb.prot4845. PMID 21356947 DOI: 10.1101/Pdb.Prot4845  1
2007 Dembinsky D, Woll K, Saleem M, Liu Y, Fu Y, Borsuk LA, Lamkemeyer T, Fladerer C, Madlung J, Barbazuk B, Nordheim A, Nettleton D, Schnable PS, Hochholdinger F. Transcriptomic and proteomic analyses of pericycle cells of the maize primary root. Plant Physiology. 145: 575-88. PMID 17766395 DOI: 10.1104/Pp.107.106203  1
2007 Ohtsu K, Smith MB, Emrich SJ, Borsuk LA, Zhou R, Chen T, Zhang X, Timmermans MC, Beck J, Buckner B, Janick-Buckner D, Nettleton D, Scanlon MJ, Schnable PS. Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). The Plant Journal : For Cell and Molecular Biology. 52: 391-404. PMID 17764504 DOI: 10.1111/J.1365-313X.2007.03244.X  1
2007 Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS. SNP discovery via 454 transcriptome sequencing. The Plant Journal : For Cell and Molecular Biology. 51: 910-8. PMID 17662031 DOI: 10.1111/J.1365-313X.2007.03193.X  1
2007 Zhang X, Madi S, Borsuk L, Nettleton D, Elshire RJ, Buckner B, Janick-Buckner D, Beck J, Timmermans M, Schnable PS, Scanlon MJ. Laser microdissection of narrow sheath mutant maize uncovers novel gene expression in the shoot apical meristem. Plos Genetics. 3: e101. PMID 17571927 DOI: 10.1371/Journal.Pgen.0030101  1
2007 Li J, Harper LC, Golubovskaya I, Wang CR, Weber D, Meeley RB, McElver J, Bowen B, Cande WZ, Schnable PS. Functional analysis of maize RAD51 in meiosis and double-strand break repair. Genetics. 176: 1469-82. PMID 17507687 DOI: 10.1534/Genetics.106.062604  1
2007 Buckner B, Beck J, Browning K, Fritz A, Grantham L, Hoxha E, Kamvar Z, Lough A, Nikolova O, Schnable PS, Scanlon MJ, Janick-Buckner D. Involving undergraduates in the annotation and analysis of global gene expression studies: creation of a maize shoot apical meristem expression database. Genetics. 176: 741-7. PMID 17409087 DOI: 10.1534/genetics.106.066472  1
2007 Li J, Hsia AP, Schnable PS. Recent advances in plant recombination. Current Opinion in Plant Biology. 10: 131-5. PMID 17291826 DOI: 10.1016/J.Pbi.2007.01.007  1
2007 Ohtsu K, Takahashi H, Schnable PS, Nakazono M. Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies. Plant & Cell Physiology. 48: 3-7. PMID 17148694 DOI: 10.1093/pcp/pcl049  0.64
2007 Emrich SJ, Li L, Wen TJ, Yandeau-Nelson MD, Fu Y, Guo L, Chou HH, Aluru S, Ashlock DA, Schnable PS. Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution. Genetics. 175: 429-39. PMID 17110490 DOI: 10.1534/Genetics.106.064006  1
2007 Emrich SJ, Barbazuk WB, Li L, Schnable PS. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Research. 17: 69-73. PMID 17095711 DOI: 10.1101/Gr.5145806  1
2007 Travers SE, Smith MD, Bai J, Hulbert SH, Leach JE, Schnable PS, Knapp AK, Milliken GA, Fay PA, Saleh A, Garrett KA. Ecological genomics: Making the leap from model systems in the lab to native populations in the field Frontiers in Ecology and the Environment. 5: 19-24. DOI: 10.1890/1540-9295(2007)5[19:Egmtlf]2.0.Co;2  1
2007 Kalyanaraman A, Emrich SJ, Schnable PS, Aluru S. Assembling genomes on large-scale parallel computers Journal of Parallel and Distributed Computing. 67: 1240-1255. DOI: 10.1016/J.Jpdc.2007.05.014  1
2006 Fu Y, Wen TJ, Ronin YI, Chen HD, Guo L, Mester DI, Yang Y, Lee M, Korol AB, Ashlock DA, Schnable PS. Genetic dissection of intermated recombinant inbred lines using a new genetic map of maize. Genetics. 174: 1671-83. PMID 16951074 DOI: 10.1534/Genetics.106.060376  1
2006 Yandeau-Nelson MD, Nikolau BJ, Schnable PS. Effects of trans-acting genetic modifiers on meiotic recombination across the a1-sh2 interval of maize. Genetics. 174: 101-12. PMID 16816431 DOI: 10.1534/Genetics.105.049270  1
2006 Maher PM, Chou HH, Hahn E, Wen TJ, Schnable PS. GRAMA: genetic mapping analysis of temperature gradient capillary electrophoresis data. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 113: 156-62. PMID 16783596 DOI: 10.1007/S00122-006-0282-6  1
2006 Yandeau-Nelson MD, Xia Y, Li J, Neuffer MG, Schnable PS. Unequal sister chromatid and homolog recombination at a tandem duplication of the A1 locus in maize. Genetics. 173: 2211-26. PMID 16751673 DOI: 10.1534/Genetics.105.052712  1
2006 Skibbe DS, Wang X, Zhao X, Borsuk LA, Nettleton D, Schnable PS. Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes. Bioinformatics (Oxford, England). 22: 1863-70. PMID 16731695 DOI: 10.1093/Bioinformatics/Btl270  0.92
2006 Swanson-Wagner RA, Jia Y, DeCook R, Borsuk LA, Nettleton D, Schnable PS. All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proceedings of the National Academy of Sciences of the United States of America. 103: 6805-10. PMID 16641103 DOI: 10.1073/Pnas.0510430103  1
2005 Jackson BN, Aluru S, Schnable PS. Consensus genetic maps: a graph theoretic approach. Proceedings. Ieee Computational Systems Bioinformatics Conference. 35-43. PMID 16447960  0.68
2005 Hochholdinger F, Woll K, Guo L, Schnable PS. The accumulation of abundant soluble proteins changes early in the development of the primary roots of maize (Zea mays L.). Proteomics. 5: 4885-93. PMID 16247731 DOI: 10.1002/Pmic.200402034  1
2005 Woll K, Borsuk LA, Stransky H, Nettleton D, Schnable PS, Hochholdinger F. Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1. Plant Physiology. 139: 1255-67. PMID 16215225 DOI: 10.1104/Pp.105.067330  0.92
2005 Kresovich S, Barbazuk B, Bedell JA, Borrell A, Buell CR, Burke J, Clifton S, Cordonnier-Pratt MM, Cox S, Dahlberg J, Erpelding J, Fulton TM, Fulton B, Fulton L, Gingle AR, ... ... Schnable PS, et al. Toward sequencing the sorghum genome. A U.S. National Science Foundation-sponsored workshop report Plant Physiology. 138: 1898-1902. PMID 16172096 DOI: 10.1104/Pp.105.065136  1
2005 Fu Y, Emrich SJ, Guo L, Wen TJ, Ashlock DA, Aluru S, Schnable PS. Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. Proceedings of the National Academy of Sciences of the United States of America. 102: 12282-7. PMID 16103354 DOI: 10.1073/Pnas.0503394102  1
2005 Wen TJ, Hochholdinger F, Sauer M, Bruce W, Schnable PS. The roothairless1 gene of maize encodes a homolog of sec3, which is involved in polar exocytosis. Plant Physiology. 138: 1637-43. PMID 15980192 DOI: 10.1104/Pp.105.062174  1
2005 Dietrich CR, Perera MA, D Yandeau-Nelson M, Meeley RB, Nikolau BJ, Schnable PS. Characterization of two GL8 paralogs reveals that the 3-ketoacyl reductase component of fatty acid elongase is essential for maize (Zea mays L.) development. The Plant Journal : For Cell and Molecular Biology. 42: 844-61. PMID 15941398 DOI: 10.1111/J.1365-313X.2005.02418.X  1
2005 Yao H, Schnable PS. Cis-effects on meiotic recombination across distinct a1-sh2 intervals in a common Zea genetic background. Genetics. 170: 1929-44. PMID 15937141 DOI: 10.1534/Genetics.104.034454  1
2005 Hsia AP, Wen TJ, Chen HD, Liu Z, Yandeau-Nelson MD, Wei Y, Guo L, Schnable PS. Temperature gradient capillary electrophoresis (TGCE)--a tool for the high-throughput discovery and mapping of SNPs and IDPs. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 218-25. PMID 15912345 DOI: 10.1007/S00122-005-1997-5  1
2005 Yao H, Guo L, Fu Y, Borsuk LA, Wen TJ, Skibbe DS, Cui X, Scheffler BE, Cao J, Emrich SJ, Ashlock DA, Schnable PS. Evaluation of five ab initio gene prediction programs for the discovery of maize genes. Plant Molecular Biology. 57: 445-60. PMID 15830133 DOI: 10.1007/S11103-005-0271-1  1
2005 Ding J, Viswanathan K, Berleant D, Hughes L, Wurtele ES, Ashlock D, Dickerson JA, Fulmer A, Schnable PS. Using the biological taxonomy to access biological literature with PathBinderH. Bioinformatics (Oxford, England). 21: 2560-2. PMID 15769838 DOI: 10.1093/Bioinformatics/Bti381  1
2005 Yandeau-Nelson MD, Zhou Q, Yao H, Xu X, Nikolau BJ, Schnable PS. MuDR transposase increases the frequency of meiotic crossovers in the vicinity of a Mu insertion in the maize a1 gene. Genetics. 169: 917-29. PMID 15489518 DOI: 10.1534/Genetics.104.035089  1
2004 Hochholdinger F, Guo L, Schnable PS. Lateral roots affect the proteome of the primary root of maize (Zea mays L.). Plant Molecular Biology. 56: 397-412. PMID 15604752 DOI: 10.1007/S11103-004-3476-9  1
2004 Kirch HH, Bartels D, Wei Y, Schnable PS, Wood AJ. The ALDH gene superfamily of Arabidopsis. Trends in Plant Science. 9: 371-7. PMID 15358267 DOI: 10.1016/J.Tplants.2004.06.004  1
2004 Fu Y, Hsia AP, Guo L, Schnable PS. Types and frequencies of sequencing errors in methyl-filtered and high c0t maize genome survey sequences. Plant Physiology. 135: 2040-5. PMID 15299135 DOI: 10.1104/Pp.104.041640  1
2004 Chou HH, Hsia AP, Mooney DL, Schnable PS. Picky: oligo microarray design for large genomes. Bioinformatics (Oxford, England). 20: 2893-902. PMID 15180932 DOI: 10.1093/Bioinformatics/Bth347  1
2004 da Costa e Silva O, Lorbiecke R, Garg P, Müller L, Wassmann M, Lauert P, Scanlon M, Hsia AP, Schnable PS, Krupinska K, Wienand U. The Etched1 gene of Zea mays (L.) encodes a zinc ribbon protein that belongs to the transcriptionally active chromosome (TAC) of plastids and is similar to the transcription factor TFIIS. The Plant Journal : For Cell and Molecular Biology. 38: 923-39. PMID 15165185 DOI: 10.1111/J.1365-313X.2004.02094.X  1
2004 Emrich SJ, Aluru S, Fu Y, Wen TJ, Narayanan M, Guo L, Ashlock DA, Schnable PS. A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics (Oxford, England). 20: 140-7. PMID 14734303 DOI: 10.1093/Bioinformatics/Bth017  1
2004 Schnable PS, Hochholdinger F, Nakazono M. Global expression profiling applied to plant development. Current Opinion in Plant Biology. 7: 50-6. PMID 14732441  0.8
2004 Hochholdinger F, Guo L, Schnable PS. Cytoplasmic regulation of the accumulation of nuclear-encoded proteins in the mitochondrial proteome of maize. The Plant Journal : For Cell and Molecular Biology. 37: 199-208. PMID 14690504 DOI: 10.1046/J.1365-313X.2003.01955.X  1
2004 Ashlock DA, Bryden KM, Corns SM, Schnable PS, Wen T. Training finite state classifiers to improve PCR primer design Collection of Technical Papers - 10th Aiaa/Issmo Multidisciplinary Analysis and Optimization Conference. 2: 1004-1012.  1
2004 Ashlock DA, Emrich SJ, Bryden KM, Corns SM, Wen TJ, Schnable PS. A comparison of evolved finite state classifiers and interpolated Markov models for improving PCR primer design Proceedings of the 2004 Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology, Cibcb'04. 190-197.  1
2003 Qiu F, Guo L, Wen TJ, Liu F, Ashlock DA, Schnable PS. DNA sequence-based "bar codes" for tracking the origins of expressed sequence tags from a maize cDNA library constructed using multiple mRNA sources. Plant Physiology. 133: 475-81. PMID 14555776 DOI: 10.1104/Pp.103.025015  1
2003 Cui X, Hsia AP, Liu F, Ashlock DA, Wise RP, Schnable PS. Alternative transcription initiation sites and polyadenylation sites are recruited during Mu suppression at the rf2a locus of maize. Genetics. 163: 685-98. PMID 12618406  1
2003 Nakazono M, Qiu F, Borsuk LA, Schnable PS. Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize. The Plant Cell. 15: 583-96. PMID 12615934  0.88
2002 Liu F, Schnable PS. Functional specialization of maize mitochondrial aldehyde dehydrogenases. Plant Physiology. 130: 1657-74. PMID 12481049 DOI: 10.1104/Pp.012336  0.96
2002 Skibbe DS, Liu F, Wen TJ, Yandeau MD, Cui X, Cao J, Simmons CR, Schnable PS. Characterization of the aldehyde dehydrogenase gene families of Zea mays and Arabidopsis. Plant Molecular Biology. 48: 751-64. PMID 11999848 DOI: 10.1023/A:1014870429630  1
2002 Yao H, Zhou Q, Li J, Smith H, Yandeau M, Nikolau BJ, Schnable PS. Molecular characterization of meiotic recombination across the 140-kb multigenic a1-sh2 interval of maize. Proceedings of the National Academy of Sciences of the United States of America. 99: 6157-62. PMID 11959909 DOI: 10.1073/Pnas.082562199  1
2002 Xu X, Dietrich CR, Lessire R, Nikolau BJ, Schnable PS. The Endoplasmic reticulum-associated maize GL8 protein is a component of the acyl-coenzyme A elongase ivolved in the production of cuticular waxes. Plant Physiology. 128: 924-34. PMID 11891248 DOI: 10.1104/Pp.010621  1
2002 Dietrich CR, Cui F, Packila ML, Li J, Ashlock DA, Nikolau BJ, Schnable PS. Maize Mu transposons are targeted to the 5' untranslated region of the gl8 gene and sequences flanking Mu target-site duplications exhibit nonrandom nucleotide composition throughout the genome. Genetics. 160: 697-716. PMID 11861572  1
2001 Bennetzen JL, Chandler VL, Schnable P. National Science Foundation-sponsored workshop report. Maize genome sequencing project. Plant Physiology. 127: 1572-8. PMID 11743101 DOI: 10.1104/Pp.010817  1
2001 Liu F, Cui X, Horner HT, Weiner H, Schnable PS. Mitochondrial aldehyde dehydrogenase activity is required for male fertility in maize. The Plant Cell. 13: 1063-78. PMID 11340182 DOI: 10.1105/Tpc.13.5.1063  1
1999 Wise RP, Gobelman-Werner K, Pei D, Dill CL, Schnable PS. Mitochondrial transcript processing and restoration of male fertility in T-cytoplasm maize. The Journal of Heredity. 90: 380-5. PMID 10355122 DOI: 10.1093/Jhered/90.3.380  0.48
1998 Schnable PS, Hsia AP, Nikolau BJ. Genetic recombination in plants Current Opinion in Plant Biology. 1: 123-129. PMID 10066571 DOI: 10.1016/S1369-5266(98)80013-7  1
1997 Xia Y, Nikolau BJ, Schnable PS. Developmental and hormonal regulation of the Arabidopsis CER2 gene that codes for a nuclear-localized protein required for the normal accumulation of cuticular waxes Plant Physiology. 115: 925-937. PMID 9390429 DOI: 10.1104/Pp.115.3.925  1
1997 Xu X, Dietrich CR, Delledonne M, Xia Y, Wen TJ, Robertson DS, Nikolau BJ, Schnable PS. Sequence analysis of the cloned glossy8 gene of maize suggests that it may code for a beta-ketoacyl reductase required for the biosynthesis of cuticular waxes. Plant Physiology. 115: 501-10. PMID 9342868 DOI: 10.1104/Pp.115.2.501  1
1997 Hansen JD, Pyee J, Xia Y, Wen TJ, Robertson DS, Kolattukudy PE, Nikolau BJ, Schnable PS. The glossy1 locus of maize and an epidermis-specific cDNA from Kleinia odora define a class of receptor-like proteins required for the normal accumulation of cuticular waxes Plant Physiology. 113: 1091-1100. PMID 9112770 DOI: 10.1104/Pp.113.4.1091  1
1996 Xia Y, Nikolau BJ, Schnable PS. Cloning and characterization of CER2, an Arabidopsis gene that affects cuticular wax accumulation Plant Cell. 8: 1291-1304. PMID 8776898 DOI: 10.1105/Tpc.8.8.1291  1
1995 Xu X, Hsia AP, Zhang L, Nikolau BJ, Schnable PS. Meictic recombination break points resolve at high rates at the 5′ end of a maize coding sequence Plant Cell. 7: 2151-2161. PMID 8718625 DOI: 10.1105/Tpc.7.12.2151  1
1995 Bensen RJ, Johal GS, Crane VC, Tossberg JT, Schnable PS, Meeley RB, Briggs SP. Cloning and characterization of the maize An1 gene Plant Cell. 7: 75-84. PMID 7696880 DOI: 10.1105/Tpc.7.1.75  1
1994 Civardi L, Xia Y, Edwards KJ, Schnable PS, Nikolau BJ. The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome Proceedings of the National Academy of Sciences of the United States of America. 91: 8268-8272. PMID 8058793 DOI: 10.1073/Pnas.91.17.8268  1
1993 Stinard PS, Robertson DS, Schnable PS. Genetic isolation, cloning, and analysis of a Mutator-induced, dominant antimorph of the maize amylose extender1 locus Plant Cell. 5: 1555-1566. DOI: 10.1105/tpc.5.11.1555  1
1989 Schnable PS, Peterson PA, Saedler H. The bz-rcy allele of the Cy transposable element system of Zea mays contains a Mu-like element insertion. Molecular & General Genetics : Mgg. 217: 459-63. PMID 2549381 DOI: 10.1007/Bf02464917  0.32
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