Year |
Citation |
Score |
2020 |
Medina EM, Robinson KA, Bellingham-Johnstun K, Ianiri G, Laplante C, Fritz-Laylin LK, Buchler NE. Genetic transformation of , a resource for studying chytrid biology and evolutionary cell biology. Elife. 9. PMID 32392127 DOI: 10.7554/Elife.52741 |
0.355 |
|
2019 |
Gowans GJ, Bridgers JB, Zhang J, Dronamraju R, Burnetti A, King DA, Thiengmany AV, Shinsky SA, Bhanu NV, Garcia BA, Buchler NE, Strahl BD, Morrison AJ. Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression. Molecular Cell. PMID 31676231 DOI: 10.1016/J.Molcel.2019.09.029 |
0.767 |
|
2019 |
Gómez-Schiavon M, Buchler NE. Epigenetic switching as a strategy for quick adaptation while attenuating biochemical noise. Plos Computational Biology. 15: e1007364. PMID 31658246 DOI: 10.1371/Journal.Pcbi.1007364 |
0.732 |
|
2019 |
Medina EM, Walsh E, Buchler NE. Evolutionary innovation, fungal cell biology, and the lateral gene transfer of a viral KilA-N domain. Current Opinion in Genetics & Development. 58: 103-110. PMID 31600629 DOI: 10.1016/J.Gde.2019.08.004 |
0.352 |
|
2019 |
Lin YT, Buchler NE. Exact and efficient hybrid Monte Carlo algorithm for accelerated Bayesian inference of gene expression models from snapshots of single-cell transcripts. The Journal of Chemical Physics. 151: 024106. PMID 31301707 DOI: 10.1063/1.5110503 |
0.37 |
|
2019 |
Chen LF, Lin YT, Gallegos DA, Hazlett MF, Gómez-Schiavon M, Yang MG, Kalmeta B, Zhou AS, Holtzman L, Gersbach CA, Grandl J, Buchler NE, West AE. Enhancer Histone Acetylation Modulates Transcriptional Bursting Dynamics of Neuronal Activity-Inducible Genes. Cell Reports. 26: 1174-1188.e5. PMID 30699347 DOI: 10.1016/J.Celrep.2019.01.032 |
0.759 |
|
2018 |
Mwimba M, Karapetyan S, Liu L, Marqués J, McGinnis EM, Buchler NE, Dong X. Daily humidity oscillation regulates the circadian clock to influence plant physiology. Nature Communications. 9: 4290. PMID 30327472 DOI: 10.1038/S41467-018-06692-2 |
0.67 |
|
2018 |
Lin YT, Buchler NE. Efficient analysis of stochastic gene dynamics in the non-adiabatic regime using piecewise deterministic Markov processes. Journal of the Royal Society, Interface. 15. PMID 29386401 DOI: 10.1098/Rsif.2017.0804 |
0.416 |
|
2017 |
Gómez-Schiavon M, Chen LF, West AE, Buchler NE. BayFish: Bayesian inference of transcription dynamics from population snapshots of single-molecule RNA FISH in single cells. Genome Biology. 18: 164. PMID 28870226 DOI: 10.1186/S13059-017-1297-9 |
0.757 |
|
2017 |
Hendler A, Medina EM, Buchler NE, de Bruin RAM, Aharoni A. The evolution of a G1/S transcriptional network in yeasts. Current Genetics. PMID 28744706 DOI: 10.1007/S00294-017-0726-3 |
0.367 |
|
2017 |
Hendler A, Medina EM, Kishkevich A, Abu-Qarn M, Klier S, Buchler NE, de Bruin RAM, Aharoni A. Gene duplication and co-evolution of G1/S transcription factor specificity in fungi are essential for optimizing cell fitness. Plos Genetics. 13: e1006778. PMID 28505153 DOI: 10.1371/Journal.Pgen.1006778 |
0.375 |
|
2017 |
Liban TJ, Medina EM, Tripathi S, Sengupta S, Henry RW, Buchler NE, Rubin SM. Conservation and divergence of C-terminal domain structure in the retinoblastoma protein family. Proceedings of the National Academy of Sciences of the United States of America. PMID 28439018 DOI: 10.1073/Pnas.1619170114 |
0.309 |
|
2017 |
Tanouchi Y, Pai A, Park H, Huang S, Buchler NE, You L. Long-term growth data of Escherichia coli at a single-cell level. Scientific Data. 4: 170036. PMID 28350394 DOI: 10.1038/Sdata.2017.36 |
0.751 |
|
2016 |
Medina EM, Turner JJ, Gordân R, Skotheim JM, Buchler NE. Punctuated evolution and transitional hybrid network in an ancestral cell cycle of fungi. Elife. 5. PMID 27162172 DOI: 10.7554/Elife.09492 |
0.423 |
|
2015 |
Karapetyan S, Buchler NE. Role of DNA binding sites and slow unbinding kinetics in titration-based oscillators. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 062712. PMID 26764732 DOI: 10.1103/Physreve.92.062712 |
0.677 |
|
2015 |
Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, et al. The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-component and Metazoan-type Tyrosine Kinase Signaling. Genome Biology and Evolution. PMID 26615215 DOI: 10.1093/Gbe/Evv237 |
0.564 |
|
2015 |
Burnetti AJ, Aydin M, Buchler NE. Cell cycle Start is coupled to entry into the yeast metabolic cycle across diverse strains and growth rates. Molecular Biology of the Cell. PMID 26538026 DOI: 10.1091/Mbc.E15-07-0454 |
0.75 |
|
2015 |
Rienzo A, Poveda-Huertes D, Aydin S, Buchler NE, Pascual-Ahuir A, Proft M. Different Mechanisms Confer Gradual Control and Memory at Nutrient- and Stress-Regulated Genes in Yeast. Molecular and Cellular Biology. 35: 3669-83. PMID 26283730 DOI: 10.1128/Mcb.00729-15 |
0.684 |
|
2015 |
Zhou M, Wang W, Karapetyan S, Mwimba M, Marqués J, Buchler NE, Dong X. Redox rhythm reinforces the circadian clock to gate immune response. Nature. 523: 472-6. PMID 26098366 DOI: 10.1038/Nature14449 |
0.696 |
|
2015 |
Tanouchi Y, Pai A, Park H, Huang S, Stamatov R, Buchler NE, You L. A noisy linear map underlies oscillations in cell size and gene expression in bacteria. Nature. 523: 357-60. PMID 26040722 DOI: 10.1038/Nature14562 |
0.76 |
|
2014 |
Mazo-Vargas A, Park H, Aydin M, Buchler NE. Measuring fast gene dynamics in single cells with time-lapse luminescence microscopy. Molecular Biology of the Cell. 25: 3699-708. PMID 25232010 DOI: 10.1091/Mbc.E14-07-1187 |
0.774 |
|
2014 |
Mazo-Vargas A, Park H, Aydin M, Buchler NE. Multicolor Timelapse Luminescence Microscopy: Optimizing Luciferases to Track Fast Gene Dynamics in Single Yeast Cells Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.2109 |
0.777 |
|
2011 |
Cross FR, Buchler NE, Skotheim JM. Evolution of networks and sequences in eukaryotic cell cycle control. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 366: 3532-44. PMID 22084380 DOI: 10.1098/Rstb.2011.0078 |
0.579 |
|
2009 |
Buchler NE, Cross FR. Protein sequestration generates a flexible ultrasensitive response in a genetic network. Molecular Systems Biology. 5: 272. PMID 19455136 DOI: 10.1038/Msb.2009.30 |
0.593 |
|
2008 |
Buchler NE, Louis M. Molecular titration and ultrasensitivity in regulatory networks. Journal of Molecular Biology. 384: 1106-19. PMID 18938177 DOI: 10.1016/J.Jmb.2008.09.079 |
0.396 |
|
2007 |
Fritz G, Buchler NE, Hwa T, Gerland U. Designing sequential transcription logic: a simple genetic circuit for conditional memory. Systems and Synthetic Biology. 1: 89-98. PMID 19003438 DOI: 10.1007/S11693-007-9006-8 |
0.701 |
|
2005 |
Buchler NE, Gerland U, Hwa T. Nonlinear protein degradation and the function of genetic circuits. Proceedings of the National Academy of Sciences of the United States of America. 102: 9559-64. PMID 15972813 DOI: 10.1073/Pnas.0409553102 |
0.68 |
|
2005 |
Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Kuhlman T, Phillips R. Transcriptional regulation by the numbers: applications. Current Opinion in Genetics & Development. 15: 125-35. PMID 15797195 DOI: 10.1016/J.Gde.2005.02.006 |
0.769 |
|
2005 |
Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Phillips R. Transcriptional regulation by the numbers: models. Current Opinion in Genetics & Development. 15: 116-24. PMID 15797194 DOI: 10.1016/J.Gde.2005.02.007 |
0.624 |
|
2005 |
Archambault V, Buchler NE, Wilmes GM, Jacobson MD, Cross FR. Two-faced cyclins with eyes on the targets. Cell Cycle (Georgetown, Tex.). 4: 125-30. PMID 15611618 DOI: 10.4161/Cc.4.1.1402 |
0.544 |
|
2003 |
Buchler NE, Gerland U, Hwa T. On schemes of combinatorial transcription logic. Proceedings of the National Academy of Sciences of the United States of America. 100: 5136-41. PMID 12702751 DOI: 10.1073/Pnas.0930314100 |
0.627 |
|
1999 |
Buchler NE, Goldstein RA. Effect of alphabet size and foldability requirements on protein structure designability. Proteins. 34: 113-24. PMID 10336377 DOI: 10.1002/(Sici)1097-0134(19990101)34:1<113::Aid-Prot9>3.0.Co;2-J |
0.391 |
|
1997 |
Buchler NE, Zuiderweg ER, Wang H, Goldstein RA. Protein heteronuclear NMR assignments using mean-field simulated annealing. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 125: 34-42. PMID 9245358 DOI: 10.1006/Jmre.1997.1106 |
0.371 |
|
Show low-probability matches. |