Chuanzhu Fan - Publications

Affiliations: 
Wayne State University, Detroit, MI, United States 

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Li J, Xu J, Yang T, Chen J, Li F, Shen B, Fan C. Genome-wide methylation analyses of human sperm unravel novel differentially methylated regions in asthenozoospermia. Epigenomics. PMID 36004499 DOI: 10.2217/epi-2022-0122  0.607
2021 Hu Y, Wu X, Jin G, Peng J, Leng R, Li L, Gui D, Fan C, Zhang C. Rapid Genome Evolution and Adaptation of Mediated by Recurrent RNA-Based and Tandem Gene Duplications. Frontiers in Plant Science. 12: 772655. PMID 35058947 DOI: 10.3389/fpls.2021.772655  0.743
2021 Huang Y, Chen J, Dong C, Sosa D, Xia S, Ouyang Y, Fan C, Li D, Mortola E, Long M, Bergelson J. Species-specific partial gene duplication in Arabidopsis thaliana evolved novel phenotypic effects on morphological traits under strong positive selection. The Plant Cell. PMID 34875081 DOI: 10.1093/plcell/koab291  0.752
2020 Li X, Fei R, Chen Z, Fan C, Sun X. Plant hormonal changes and differential expression profiling reveal seed dormancy removal process in double dormant plant-herbaceous peony. Plos One. 15: e0231117. PMID 32240252 DOI: 10.1371/Journal.Pone.0231117  0.378
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Fan C, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/S41588-018-0261-2  0.702
2018 Li X, Liu P, Yang P, Fan C, Sun X. Characterization of the glycerol-3-phosphate acyltransferase gene and its real-time expression under cold stress in Paeonia lactiflora Pall. Plos One. 13: e0202168. PMID 30096187 DOI: 10.1371/Journal.Pone.0202168  0.487
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Fan C, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/S41588-018-0040-0  0.743
2017 Huang Y, Wang J, Yang Y, Fan C, Chen J. Phylogenomic Analysis and Dynamic Evolution of Chloroplast Genomes in Salicaceae. Frontiers in Plant Science. 8: 1050. PMID 28676809 DOI: 10.3389/Fpls.2017.01050  0.633
2016 Wang J, Tao F, Marowsky NC, Fan C. Evolutionary Fates and Dynamic Functionalization of Young Duplicate Genes in Arabidopsis Genomes. Plant Physiology. PMID 27485883 DOI: 10.1104/Pp.16.01177  0.614
2016 Wang J, Yu Y, Tao F, Zhang J, Copetti D, Kudrna D, Talag J, Lee S, Wing RA, Fan C. DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biology. 17: 92. PMID 27154274 DOI: 10.1186/S13059-016-0954-8  0.575
2015 Copetti D, Zhang J, El Baidouri M, Gao D, Wang J, Barghini E, Cossu RM, Angelova A, Maldonado L CE, Roffler S, Ohyanagi H, Wicker T, Fan C, Zuccolo A, Chen M, et al. RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. Bmc Genomics. 16: 538. PMID 26194356 DOI: 10.1186/S12864-015-1762-3  0.617
2015 Wang J, Fan C. A neutrality test for detecting selection on DNA methylation using single methylation polymorphism frequency spectrum. Genome Biology and Evolution. 7: 154-71. PMID 25539727 DOI: 10.1093/Gbe/Evu271  0.457
2014 Wang J, Marowsky NC, Fan C. Divergence of gene body DNA methylation and evolution of plant duplicate genes. Plos One. 9: e110357. PMID 25310342 DOI: 10.1371/Journal.Pone.0110357  0.535
2014 Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, et al. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics. 46: 982-8. PMID 25064006 DOI: 10.1038/Ng.3044  0.789
2014 Sivaji M, Sadasivam V, Narayanasamy J, Samuel S, Fan C. Detection, characterization and evolution of internal repeats in Chitinases of known 3-D structure. Plos One. 9: e91915. PMID 24637574 DOI: 10.1371/Journal.Pone.0091915  0.32
2013 Wang J, Marowsky NC, Fan C. Divergent evolutionary and expression patterns between lineage specific new duplicate genes and their parental paralogs in Arabidopsis thaliana. Plos One. 8: e72362. PMID 24009676 DOI: 10.1371/Journal.Pone.0072362  0.552
2013 Zhang C, Wang J, Marowsky NC, Long M, Wing RA, Fan C. High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution. 5: 1038-48. PMID 23651622 DOI: 10.1093/Gbe/Evt071  0.783
2013 Zhang C, Wang J, Long M, Fan C. gKaKs: the pipeline for genome-level Ka/Ks calculation. Bioinformatics (Oxford, England). 29: 645-6. PMID 23314322 DOI: 10.1093/Bioinformatics/Btt009  0.747
2011 Fan C, Walling JG, Zhang J, Hirsch CD, Jiang J, Wing RA. Conservation and purifying selection of transcribed genes located in a rice centromere. The Plant Cell. 23: 2821-30. PMID 21856794 DOI: 10.1105/Tpc.111.085605  0.581
2010 Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/J.1365-313X.2010.04251.X  0.537
2010 Arguello JR, Zhang Y, Kado T, Fan C, Zhao R, Innan H, Wang W, Long M. Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome. Molecular Biology and Evolution. 27: 848-61. PMID 20008457 DOI: 10.1093/Molbev/Msp291  0.632
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Fan C, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534  0.582
2009 Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/J.1365-313X.2009.04005.X  0.538
2008 Fan C, Zhang Y, Yu Y, Rounsley S, Long M, Wing RA. The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Molecular Plant. 1: 839-50. PMID 19825586 DOI: 10.1093/Mp/Ssn050  0.732
2008 Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/Tpc.108.063727  0.598
2008 Fan C, Chen Y, Long M. Recurrent tandem gene duplication gave rise to functionally divergent genes in Drosophila. Molecular Biology and Evolution. 25: 1451-8. PMID 18408233 DOI: 10.1093/Molbev/Msn089  0.688
2008 Nayidu NK, Wang L, Xie W, Zhang C, Fan C, Lian X, Zhang Q, Xiong L. Comprehensive sequence and expression profile analysis of PEX11 gene family in rice. Gene. 412: 59-70. PMID 18291602 DOI: 10.1016/J.Gene.2008.01.006  0.686
2007 Fan C, Long M. A new retroposed gene in Drosophila heterochromatin detected by microarray-based comparative genomic hybridization. Journal of Molecular Evolution. 64: 272-83. PMID 17177089 DOI: 10.1007/S00239-006-0169-9  0.702
2007 Fan C, Xiang QY, Remington DL, Purugganan MD, Wiegmann BM. Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae). Genetica. 130: 19-34. PMID 16924407 DOI: 10.1007/S10709-006-0016-3  0.426
2007 Fan C, Vibranovski MD, Chen Y, Long M. A Microarray Based Genomic Hybridization Method for Identification of New Genes in Plants: Case Analyses of Arabidopsis and Oryza Journal of Integrative Plant Biology. 49: 915-926. DOI: 10.1111/J.1744-7909.2007.00503.X  0.818
2006 Modliszewski JL, Thomas DT, Fan C, Crawford DJ, Depamphilis CW, Xiang QY. Ancestral chloroplast polymorphism and historical secondary contact in a broad hybrid zone of Aesculus (Sapindaceae). American Journal of Botany. 93: 377-88. PMID 21646198 DOI: 10.3732/Ajb.93.3.377  0.737
2006 Wang W, Zheng H, Fan C, Li J, Shi J, Cai Z, Zhang G, Liu D, Zhang J, Vang S, Lu Z, Wong GK, Long M, Wang J. High rate of chimeric gene origination by retroposition in plant genomes. The Plant Cell. 18: 1791-802. PMID 16829590 DOI: 10.1105/Tpc.106.041905  0.735
2005 Xiang QY, Manchester SR, Thomas DT, Zhang W, Fan C. Phylogeny, biogeography, and molecular dating of cornelian cherries (Cornus, Cornaceae): tracking Tertiary plant migration. Evolution; International Journal of Organic Evolution. 59: 1685-700. PMID 16329240 DOI: 10.1111/J.0014-3820.2005.Tb01818.X  0.731
2004 Fan C, Purugganan MD, Thomas DT, Wiegmann BM, Xiang JQ. Heterogeneous evolution of the Myc-like Anthocyanin regulatory gene and its phylogenetic utility in Cornus L. (Cornaceae). Molecular Phylogenetics and Evolution. 33: 580-94. PMID 15522789 DOI: 10.1016/J.Ympev.2004.08.002  0.455
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