Chuanzhu Fan - Publications

Affiliations: 
Wayne State University, Detroit, MI, United States 

16/31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Copetti D, Zhang J, El Baidouri M, Gao D, Wang J, Barghini E, Cossu RM, Angelova A, Maldonado L CE, Roffler S, Ohyanagi H, Wicker T, Fan C, Zuccolo A, Chen M, et al. RiTE database: a resource database for genus-wide rice genomics and evolutionary biology. Bmc Genomics. 16: 538. PMID 26194356 DOI: 10.1186/s12864-015-1762-3  0.36
2014 Wang M, Yu Y, Haberer G, Marri PR, Fan C, Goicoechea JL, Zuccolo A, Song X, Kudrna D, Ammiraju JS, Cossu RM, Maldonado C, Chen J, Lee S, Sisneros N, et al. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics. 46: 982-8. PMID 25064006 DOI: 10.1038/ng.3044  0.36
2013 Zhang C, Wang J, Marowsky NC, Long M, Wing RA, Fan C. High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution. 5: 1038-48. PMID 23651622 DOI: 10.1093/gbe/evt071  0.36
2011 Fan C, Walling JG, Zhang J, Hirsch CD, Jiang J, Wing RA. Conservation and purifying selection of transcribed genes located in a rice centromere. The Plant Cell. 23: 2821-30. PMID 21856794 DOI: 10.1105/tpc.111.085605  0.36
2010 Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, et al. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. The Plant Journal : For Cell and Molecular Biology. 63: 430-42. PMID 20487382 DOI: 10.1111/j.1365-313X.2010.04251.x  0.36
2009 Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Fan C, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/science.1178534  0.36
2009 Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/j.1365-313X.2009.04005.x  0.36
2008 Fan C, Zhang Y, Yu Y, Rounsley S, Long M, Wing RA. The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Molecular Plant. 1: 839-50. PMID 19825586 DOI: 10.1093/mp/ssn050  0.36
2008 Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, et al. Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. The Plant Cell. 20: 3191-209. PMID 19098269 DOI: 10.1105/tpc.108.063727  0.36
2008 Fan C, Chen Y, Long M. Recurrent tandem gene duplication gave rise to functionally divergent genes in Drosophila. Molecular Biology and Evolution. 25: 1451-8. PMID 18408233 DOI: 10.1093/molbev/msn089  0.36
2007 Fan C, Xiang QY, Remington DL, Purugganan MD, Wiegmann BM. Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae). Genetica. 130: 19-34. PMID 16924407 DOI: 10.1007/s10709-006-0016-3  0.36
2006 Modliszewski JL, Thomas DT, Fan C, Crawford DJ, Depamphilis CW, Xiang QY. Ancestral chloroplast polymorphism and historical secondary contact in a broad hybrid zone of Aesculus (Sapindaceae). American Journal of Botany. 93: 377-88. PMID 21646198 DOI: 10.3732/ajb.93.3.377  0.36
2005 Xiang QY, Manchester SR, Thomas DT, Zhang W, Fan C. Phylogeny, biogeography, and molecular dating of cornelian cherries (Cornus, Cornaceae): tracking Tertiary plant migration. Evolution; International Journal of Organic Evolution. 59: 1685-700. PMID 16329240  0.36
2005 Houston NL, Fan C, Xiang JQ, Schulze JM, Jung R, Boston RS. Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins. Plant Physiology. 137: 762-78. PMID 15684019 DOI: 10.1104/pp.104.056507  0.36
2004 Fan C, Purugganan MD, Thomas DT, Wiegmann BM, Xiang JQ. Heterogeneous evolution of the Myc-like Anthocyanin regulatory gene and its phylogenetic utility in Cornus L. (Cornaceae). Molecular Phylogenetics and Evolution. 33: 580-94. PMID 15522789 DOI: 10.1016/j.ympev.2004.08.002  0.36
2003 Fan C, Xiang QY. Phylogenetic analyses of Cornales based on 26S rRNA and combined 26S rDNA-MATK-RBCL sequence data. American Journal of Botany. 90: 1357-72. PMID 21659236 DOI: 10.3732/ajb.90.9.1357  0.84
Low-probability matches
2015 Wang J, Fan C. A neutrality test for detecting selection on DNA methylation using single methylation polymorphism frequency spectrum. Genome Biology and Evolution. 7: 154-71. PMID 25539727 DOI: 10.1093/gbe/evu271  0.08
2008 Nayidu NK, Wang L, Xie W, Zhang C, Fan C, Lian X, Zhang Q, Xiong L. Comprehensive sequence and expression profile analysis of PEX11 gene family in rice. Gene. 412: 59-70. PMID 18291602 DOI: 10.1016/j.gene.2008.01.006  0.08
2007 Fan C, Long M. A new retroposed gene in Drosophila heterochromatin detected by microarray-based comparative genomic hybridization. Journal of Molecular Evolution. 64: 272-83. PMID 17177089 DOI: 10.1007/s00239-006-0169-9  0.08
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... ... Fan C, et al. Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 30291357 DOI: 10.1038/s41588-018-0261-2  0.04
2018 Li X, Liu P, Yang P, Fan C, Sun X. Characterization of the glycerol-3-phosphate acyltransferase gene and its real-time expression under cold stress in Paeonia lactiflora Pall. Plos One. 13: e0202168. PMID 30096187 DOI: 10.1371/journal.pone.0202168  0.01
2018 Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, ... Fan C, et al. Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics. PMID 29358651 DOI: 10.1038/s41588-018-0040-0  0.04
2017 Huang Y, Wang J, Yang Y, Fan C, Chen J. Phylogenomic Analysis and Dynamic Evolution of Chloroplast Genomes in Salicaceae. Frontiers in Plant Science. 8: 1050. PMID 28676809 DOI: 10.3389/fpls.2017.01050  0.16
2016 Wang J, Tao F, Marowsky NC, Fan C. Evolutionary Fates and Dynamic Functionalization of Young Duplicate Genes in Arabidopsis Genomes. Plant Physiology. PMID 27485883 DOI: 10.1104/pp.16.01177  0.36
2016 Wang J, Yu Y, Tao F, Zhang J, Copetti D, Kudrna D, Talag J, Lee S, Wing RA, Fan C. DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biology. 17: 92. PMID 27154274 DOI: 10.1186/s13059-016-0954-8  0.36
2014 Wang J, Marowsky NC, Fan C. Divergence of gene body DNA methylation and evolution of plant duplicate genes. Plos One. 9: e110357. PMID 25310342 DOI: 10.1371/journal.pone.0110357  0.01
2014 Sivaji M, Sadasivam V, Narayanasamy J, Samuel S, Fan C. Detection, characterization and evolution of internal repeats in Chitinases of known 3-D structure. Plos One. 9: e91915. PMID 24637574 DOI: 10.1371/journal.pone.0091915  0.01
2013 Wang J, Marowsky NC, Fan C. Divergent evolutionary and expression patterns between lineage specific new duplicate genes and their parental paralogs in Arabidopsis thaliana. Plos One. 8: e72362. PMID 24009676 DOI: 10.1371/journal.pone.0072362  0.01
2013 Zhang C, Wang J, Long M, Fan C. gKaKs: the pipeline for genome-level Ka/Ks calculation. Bioinformatics (Oxford, England). 29: 645-6. PMID 23314322 DOI: 10.1093/bioinformatics/btt009  0.01
2010 Arguello JR, Zhang Y, Kado T, Fan C, Zhao R, Innan H, Wang W, Long M. Recombination yet inefficient selection along the Drosophila melanogaster subgroup's fourth chromosome. Molecular Biology and Evolution. 27: 848-61. PMID 20008457 DOI: 10.1093/molbev/msp291  0.01
2006 Wang W, Zheng H, Fan C, Li J, Shi J, Cai Z, Zhang G, Liu D, Zhang J, Vang S, Lu Z, Wong GK, Long M, Wang J. High rate of chimeric gene origination by retroposition in plant genomes. The Plant Cell. 18: 1791-802. PMID 16829590 DOI: 10.1105/tpc.106.041905  0.01
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