Robert Lanfear - Publications

Affiliations: 
Australian National University, Acton, Australian Capital Territory, Australia 
Area:
Molecular evolution, phylogenetics

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Orr AJ, Padovan A, Kainer D, Külheim C, Bromham L, Bustos-Segura C, Foley W, Haff T, Hsieh JF, Morales-Suarez A, Cartwright RA, Lanfear R. A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant. Proceedings. Biological Sciences. 287: 20192364. PMID 32156194 DOI: 10.1098/rspb.2019.2364  1
2019 Duchêne DA, Tong KJ, Foster CSP, Duchêne S, Lanfear R, Ho SYW. Linking Branch Lengths Across Sets of Loci Provides the Highest Statistical Support for Phylogenetic Inference. Molecular Biology and Evolution. PMID 31825512 DOI: 10.1093/molbev/msz291  0.76
2017 Warren DL, Geneva AJ, Lanfear R. RWTY (R We There Yet): An R package for examining convergence of Bayesian phylogenetic analyses. Molecular Biology and Evolution. PMID 28087773 DOI: 10.1093/molbev/msw279  0.56
2016 Barton K, Hiener B, Winckelmann A, Rasmussen TA, Shao W, Byth K, Lanfear R, Solomon A, McMahon J, Harrington S, Buzon M, Lichterfeld M, Denton PW, Olesen R, Østergaard L, et al. Broad activation of latent HIV-1 in vivo. Nature Communications. 7: 12731. PMID 27605062 DOI: 10.1038/ncomms12731  1
2016 Lanfear R, Hua X, Warren DL. Estimating the Effective Sample Size of tree topologies from Bayesian phylogenetic analyses. Genome Biology and Evolution. PMID 27435794 DOI: 10.1093/gbe/evw171  0.56
2015 Roche DG, Kruuk LE, Lanfear R, Binning SA. Public Data Archiving in Ecology and Evolution: How Well Are We Doing? Plos Biology. 13: e1002295. PMID 26556502 DOI: 10.1371/journal.pbio.1002295  1
2015 Kjer KM, Ware JL, Rust J, Wappler T, Lanfear R, Jermiin LS, Zhou X, Aspöck H, Aspöck U, Beutel RG, Blanke A, Donath A, Flouri T, Frandsen PB, Kapli P, et al. Response to Comment on "Phylogenomics resolves the timing and pattern of insect evolution". Science (New York, N.Y.). 349: 487. PMID 26228138 DOI: 10.1126/science.aaa7136  1
2015 Frandsen PB, Calcott B, Mayer C, Lanfear R. Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates. Bmc Evolutionary Biology. 15: 13. PMID 25887041 DOI: 10.1186/s12862-015-0283-7  1
2015 Bromham L, Hua X, Lanfear R, Cowman PF. Exploring the Relationships between Mutation Rates, Life History, Genome Size, Environment, and Species Richness in Flowering Plants. The American Naturalist. 185: 507-24. PMID 25811085 DOI: 10.1086/680052  1
2015 Head ML, Holman L, Lanfear R, Kahn AT, Jennions MD. The extent and consequences of p-hacking in science. Plos Biology. 13: e1002106. PMID 25768323 DOI: 10.1371/journal.pbio.1002106  1
2015 Cooke J, Lanfear R, Downing A, Gillings MR, Poore AGB, Goodwin ID, Waldron LS, Phillips A, Metti Y, Bulbert MW. The unusual occurrence of green algal balls of Chaetomorpha linum on a beach in Sydney, Australia Botanica Marina. 58: 401-407. DOI: 10.1515/bot-2015-0061  1
2015 Holman L, Head ML, Lanfear R, Jennions MD. Evidence of experimental bias in the life sciences: Why we need blind data recording Plos Biology. 13. DOI: 10.1371/journal.pbio.1002190  1
2015 Kainer D, Lanfear R. The effects of partitioning on phylogenetic inference Molecular Biology and Evolution. 32: 1611-1627. DOI: 10.1093/molbev/msv026  1
2015 Bromham L, Hua X, Lanfear R, Cowman PF. Exploring the relationships between mutation rates, life history, genome size, environment, and species richness in flowering plants American Naturalist. 185: 508-524. DOI: 10.1086/680052  1
2015 Kainer D, Lanfear R, Foley WJ, Külheim C. Genomic approaches to selection in outcrossing perennials: focus on essential oil crops Theoretical and Applied Genetics. DOI: 10.1007/s00122-015-2591-0  1
2015 Duchêne S, Lanfear R. Phylogenetic uncertainty can bias the number of evolutionary transitions estimated from ancestral state reconstruction methods Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 324: 517-524. DOI: 10.1002/jez.b.22638  1
2014 Lehtonen J, Lanfear R. Generation time, life history and the substitution rate of neutral mutations. Biology Letters. 10: 20140801. PMID 25428931 DOI: 10.1098/rsbl.2014.0801  1
2014 Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F, Wappler T, Rust J, ... ... Lanfear R, et al. Phylogenomics resolves the timing and pattern of insect evolution. Science (New York, N.Y.). 346: 763-7. PMID 25378627 DOI: 10.1126/science.1257570  1
2014 Jones TM, Fanson KV, Lanfear R, Symonds MR, Higgie M. Gender differences in conference presentations: a consequence of self-selection? Peerj. 2: e627. PMID 25346879 DOI: 10.7717/peerj.627  1
2014 Duchêne S, Lanfear R, Ho SY. The impact of calibration and clock-model choice on molecular estimates of divergence times. Molecular Phylogenetics and Evolution. 78: 277-89. PMID 24910154 DOI: 10.1016/j.ympev.2014.05.032  1
2014 Lanfear R, Pennell MW. Open access is worth considering: A reply to Agrawal Trends in Plant Science. 19: 340-341. PMID 24794132 DOI: 10.1016/j.tplants.2014.04.006  1
2014 Lanfear R, Calcott B, Kainer D, Mayer C, Stamatakis A. Selecting optimal partitioning schemes for phylogenomic datasets. Bmc Evolutionary Biology. 14: 82. PMID 24742000 DOI: 10.1186/1471-2148-14-82  1
2014 Roche DG, Lanfear R, Binning SA, Haff TM, Schwanz LE, Cain KE, Kokko H, Jennions MD, Kruuk LE. Troubleshooting public data archiving: suggestions to increase participation. Plos Biology. 12: e1001779. PMID 24492920 DOI: 10.1371/journal.pbio.1001779  1
2014 Moray C, Lanfear R, Bromham L. Domestication and the mitochondrial genome: comparing patterns and rates of molecular evolution in domesticated mammals and birds and their wild relatives. Genome Biology and Evolution. 6: 161-169. PMID 24459286 DOI: 10.1093/gbe/evu005  1
2014 Lanfear R, Kokko H, Eyre-Walker A. Population size and the rate of evolution Trends in Ecology and Evolution. 29: 33-41. PMID 24148292 DOI: 10.1016/j.tree.2013.09.009  1
2014 Catullo RA, Lanfear R, Doughty P, Keogh JS. The biogeographical boundaries of northern Australia: Evidence from ecological niche models and a multi-locus phylogeny of Uperoleia toadlets (Anura: Myobatrachidae) Journal of Biogeography. 41: 659-672. DOI: 10.1111/jbi.12230  1
2013 Bromham L, Cowman PF, Lanfear R. Parasitic plants have increased rates of molecular evolution across all three genomes Bmc Evolutionary Biology. 13. PMID 23782527 DOI: 10.1186/1471-2148-13-126  1
2013 Lanfear R, Ho SY, Jonathan Davies T, Moles AT, Aarssen L, Swenson NG, Warman L, Zanne AE, Allen AP. Taller plants have lower rates of molecular evolution. Nature Communications. 4: 1879. PMID 23695673 DOI: 10.1038/ncomms2836  1
2013 Holman L, Lanfear R, D'Ettorre P. The evolution of queen pheromones in the ant genus Lasius Journal of Evolutionary Biology. 26: 1549-1558. PMID 23662630 DOI: 10.1111/jeb.12162  1
2013 Webb H, Lanfear R, Hamill J, Foley WJ, Külheim C. The yield of essential oils in Melaleuca alternifolia (Myrtaceae) is regulated through transcript abundance of genes in the MEP pathway. Plos One. 8: e60631. PMID 23544156 DOI: 10.1371/journal.pone.0060631  1
2013 Padovan A, Lanfear R, Keszei A, Foley WJ, Külheim C. Correction to Differences in gene expression within a striking phenotypic mosaic Eucalyptus tree that varies in susceptibility to herbivory [BMC Plant Biology 13,57 2013] Bmc Plant Biology. 13. DOI: 10.1186/1471-2229-13-57  1
2012 Bromham L, Lanfear R, Cassey P, Gibb G, Cardillo M. Reconstructing past species assemblages reveals the changing patterns and drivers of extinction through time Proceedings of the Royal Society B: Biological Sciences. 279: 4024-4032. PMID 22859591 DOI: 10.1098/rspb.2012.1437  1
2012 Ho SYW, Lanfear R. Mito-communications Mitochondrial Dna. 23: 321-322. PMID 22591206 DOI: 10.3109/19401736.2012.683187  1
2012 Lanfear R, Calcott B, Ho SYW, Guindon S. PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses Molecular Biology and Evolution. 29: 1695-1701. PMID 22319168 DOI: 10.1093/molbev/mss020  1
2012 Skroblin A, Lanfear R, Cockburn A, Legge S. Inferring population connectivity across the range of the purple-crowned fairy-wren (Malurus coronatus) from mitochondrial DNA and morphology: Implications for conservation management Australian Journal of Zoology. 60: 199-209. DOI: 10.1071/ZO12093  1
2011 Goldie X, Lanfear R, Bromham L. Diversification and the rate of molecular evolution: no evidence of a link in mammals. Bmc Evolutionary Biology. 11: 286. PMID 21967038 DOI: 10.1186/1471-2148-11-286  1
2011 Lanfear R, Bromham L. Estimating phylogenies for species assemblages: A complete phylogeny for the past and present native birds of New Zealand Molecular Phylogenetics and Evolution. 61: 958-963. PMID 21835254 DOI: 10.1016/j.ympev.2011.07.018  1
2011 Ho SYW, Lanfear R, Bromham L, Phillips MJ, Soubrier J, Rodrigo AG, Cooper A. Time-dependent rates of molecular evolution Molecular Ecology. 20: 3087-3101. PMID 21740474 DOI: 10.1111/j.1365-294X.2011.05178.x  1
2011 Lanfear R, Ho SY. Mito-communications. Mitochondrial Dna. 22: 39-40. PMID 21732717 DOI: 10.3109/19401736.2011.597851  1
2011 Ho SY, Lanfear R, Phillips MJ, Barnes I, Thomas JA, Kolokotronis SO, Shapiro B. Bayesian estimation of substitution rates from ancient DNA sequences with low information content. Systematic Biology. 60: 366-75. PMID 21296909 DOI: 10.1093/sysbio/syq099  1
2011 Lanfear R. The local-clock permutation test: A simple test to compare rates of molecular evolution on phylogenetic trees Evolution. 65: 606-611. PMID 21272000 DOI: 10.1111/j.1558-5646.2010.01160.x  1
2011 Goldie X, Lanfear R, Bromham L. Diversification and the rate of molecular evolution: No evidence of a link in mammals Bmc Evolutionary Biology. 11. DOI: 10.1186/1471-2148-11-286  1
2011 Lanfear R, Bromham L, Ho SYW. Reply to Englund: Molecular evolution and diversification - Counting species is better than counting nodes when the phylogeny is unknown Proceedings of the National Academy of Sciences of the United States of America. 108: E85-E86. DOI: 10.1073/pnas.1101940108  1
2010 Fritsch C, Lanfear R, Ray RP. Rapid evolution of a novel signalling mechanism by concerted duplication and divergence of a BMP ligand and its extracellular modulators Development Genes and Evolution. 220: 235-250. PMID 21086136 DOI: 10.1007/s00427-010-0341-5  1
2010 Lanfear R, Ho SYW, Love D, Bromham L. Mutation rate is linked to diversification in birds Proceedings of the National Academy of Sciences of the United States of America. 107: 20423-20428. PMID 21059910 DOI: 10.1073/pnas.1007888107  1
2010 Ho SY, Lanfear R. Mito-communications. Mitochondrial Dna. 21: 147-8. PMID 20958221 DOI: 10.3109/19401736.2010.508091  1
2010 Ho SYW, Lanfear R. Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks Mitochondrial Dna. 21: 138-146. PMID 20795783 DOI: 10.3109/19401736.2010.494727  1
2010 Lanfear R. Are the deuterostome posterior hox genes a fast-evolving class? Advances in Experimental Medicine and Biology. 689: 111-122. PMID 20795326 DOI: 10.1007/978-1-4419-6673-5_8  1
2010 Lanfear R, Ho SY. Mito-communications. Mitochondrial Dna. 21: 57-8. PMID 20658959 DOI: 10.3109/19401736.2010.482586  1
2010 Lanfear R, Welch JJ, Bromham L. Watching the clock: Studying variation in rates of molecular evolution between species Trends in Ecology and Evolution. 25: 495-503. PMID 20655615 DOI: 10.1016/j.tree.2010.06.007  1
2010 Thomas JA, Welch JJ, Lanfear R, Bromham L. A generation time effect on the rate of molecular evolution in invertebrates Molecular Biology and Evolution. 27: 1173-1180. PMID 20083649 DOI: 10.1093/molbev/msq009  1
2010 Lanfear R, Ho SY. Mito-communications. Mitochondrial Dna. 21: 1-4. PMID 19919327 DOI: 10.3109/19401730903323175  1
2009 Bourlat SJ, Rota-Stabelli O, Lanfear R, Telford MJ. The mitochondrial genome structure of Xenoturbella bocki (phylum Xenoturbellida) is ancestral within the deuterostomes Bmc Evolutionary Biology. 9. DOI: 10.1186/1471-2148-9-107  1
2008 Pueyo JI, Lanfear R, Couso JP. Ancestral Notch-mediated segmentation revealed in the cockroach Periplaneta americana Proceedings of the National Academy of Sciences of the United States of America. 105: 16614-16619. PMID 18927236 DOI: 10.1073/pnas.0804093105  1
2008 Lanfear R, Bromham L. Statistical tests between competing hypotheses of hox cluster evolution Systematic Biology. 57: 708-718. PMID 18853358 DOI: 10.1080/10635150802430079  1
2007 Lanfear R, Thomas JA, Welch JJ, Brey T, Bromham L. Metabolie rate does not calibrate the molecular clock Proceedings of the National Academy of Sciences of the United States of America. 104: 15388-15393. PMID 17881572 DOI: 10.1073/pnas.0703359104  1
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