Robert Lanfear - Related publications

Australian National University, Acton, Australian Capital Territory, Australia 
Molecular evolution, phylogenetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Harvey VL, Keating JN, Buckley M. Phylogenetic analyses of ray-finned fishes (Actinopterygii) using collagen type I protein sequences. Royal Society Open Science. 8: 201955. PMID 34430038 DOI: 10.1098/rsos.201955   
2021 Tian X, Guo J, Zhou X, Ma K, Ma Y, Shi T, Shi Y. Comparative and Evolutionary Analyses on the Complete Plastomes of Five Horticultural Plants. Frontiers in Plant Science. 12: 705874. PMID 34512691 DOI: 10.3389/fpls.2021.705874   
2021 Tao Y, Chen B, Kang M, Liu Y, Wang J. Genome-Wide Evidence for Complex Hybridization and Demographic History in a Group of From China. Frontiers in Genetics. 12: 717200. PMID 34527022 DOI: 10.3389/fgene.2021.717200   
2021 Bentlage B, Collins AG. Tackling the phylogenetic conundrum of Hydroidolina (Cnidaria: Medusozoa: Hydrozoa) by assessing competing tree topologies with targeted high-throughput sequencing. Peerj. 9: e12104. PMID 34589302 DOI: 10.7717/peerj.12104   
2021 Rasplus JY, Rodriguez LJ, Sauné L, Peng YQ, Bain A, Kjellberg F, Harrison RD, Pereira RAS, Ubaidillah R, Tollon-Cordet C, Gautier M, Rossi JP, Cruaud A. Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus Ficus (Moraceae). Cladistics : the International Journal of the Willi Hennig Society. 37: 402-422. PMID 34478193 DOI: 10.1111/cla.12443   
2021 Yardeni G, Viruel J, Paris M, Hess J, Groot Crego C, de La Harpe M, Rivera N, Barfuss MHJ, Till W, Guzmán-Jacob V, Krömer T, Lexer C, Paun O, Leroy T. Taxon-specific or universal? Using target capture to study the evolutionary history of rapid radiations. Molecular Ecology Resources. PMID 34606683 DOI: 10.1111/1755-0998.13523   
2021 Carnovale CS, Fernández GP, Merino ML, Mora MS. Redefining the Distributional Boundaries and Phylogenetic Relationships for Ctenomids From Central Argentina. Frontiers in Genetics. 12: 698134. PMID 34422000 DOI: 10.3389/fgene.2021.698134   
2021 Cunha TJ, Reimer JD, Giribet G. Investigating Sources of Conflict in Deep Phylogenomics of Vetigastropod Snails. Systematic Biology. PMID 34469579 DOI: 10.1093/sysbio/syab071   
2021 Tihelka E, Cai C, Giacomelli M, Lozano-Fernandez J, Rota-Stabelli O, Huang D, Engel MS, Donoghue PCJ, Pisani D. The evolution of insect biodiversity. Current Biology : Cb. 31: R1299-R1311. PMID 34637741 DOI: 10.1016/j.cub.2021.08.057   
2021 Atta CJ, Yuan H, Li C, Arcila D, Betancur-R R, Hughes LC, Ortí G, Tornabene L. Exon-capture data and locus screening provide new insights into the phylogeny of flatfishes (Pleuronectoidei). Molecular Phylogenetics and Evolution. 166: 107315. PMID 34537325 DOI: 10.1016/j.ympev.2021.107315   
2021 Kim H, Yang JH, Bustamante DE, Calderon MS, Mansilla A, Maggs CA, Hansen GI, Yoon HS. Organelle Genome Variation in the Red Algal Genus (Florideophyceae). Frontiers in Genetics. 12: 724734. PMID 34646303 DOI: 10.3389/fgene.2021.724734   
2021 Chen S, Yan H, Sha L, Chen N, Zhang H, Zhou Y, Fan X. Chloroplast Phylogenomic Analyses Resolve Multiple Origins of the Species (Poaceae: Triticeae) Independent Polyploidization Events. Frontiers in Plant Science. 12: 682040. PMID 34421940 DOI: 10.3389/fpls.2021.682040   
2021 Chazot N, Blandin P, Debat V, Elias M, Condamine FL. Punctuational ecological changes rather than global factors drive species diversification and the evolution of wing phenotypes in Morpho butterflies. Journal of Evolutionary Biology. PMID 34449944 DOI: 10.1111/jeb.13921   
2021 Duchêne DA, Mather N, Van Der Wal C, Ho SYW. Excluding loci with substitution saturation improves inferences from phylogenomic data. Systematic Biology. PMID 34508605 DOI: 10.1093/sysbio/syab075   
2021 Baker CM, Buckman-Young RS, Costa CS, Giribet G. Phylogenomic analysis of velvet worms (Onychophora) uncovers an evolutionary radiation in the Neotropics. Molecular Biology and Evolution. PMID 34427671 DOI: 10.1093/molbev/msab251   
2021 Buffalo V. Quantifying the relationship between genetic diversity and population size suggests natural selection cannot explain Lewontin's paradox. Elife. 10. PMID 34409937 DOI: 10.7554/eLife.67509   
2021 Vilaça ST, Piccinno R, Rota-Stabelli O, Gabrielli M, Benazzo A, Matschiner M, Soares LS, Bolten AB, Bjorndal KA, Bertorelle G. Divergence and hybridization in sea turtles: Inferences from genome data show evidence of ancient gene flow between species. Molecular Ecology. PMID 34390061 DOI: 10.1111/mec.16113   
2021 Yang B, Zhang Z, Yang C, Wang Y, Orr MC, Hongbin W, Zhang AB. Identification of Species by Combining Molecular and Morphological Data Using Convolutional Neural Networks. Systematic Biology. PMID 34524452 DOI: 10.1093/sysbio/syab076   
2021 Vieu JC, Koubínová D, Grant JR. The Evolution of Trait Disparity during the Radiation of the Plant Genus (Gentianaceae) in the Tropical Andes. Biology. 10. PMID 34571702 DOI: 10.3390/biology10090825   
2021 Balaban M, Jiang Y, Roush D, Zhu Q, Mirarab S. Fast and Accurate Distance-based Phylogenetic Placement using Divide and Conquer. Molecular Ecology Resources. PMID 34643995 DOI: 10.1111/1755-0998.13527   
2021 Liu S, Westbury MV, Dussex N, Mitchell KJ, Sinding MS, Heintzman PD, Duchêne DA, Kapp JD, von Seth J, Heiniger H, Sánchez-Barreiro F, Margaryan A, André-Olsen R, De Cahsan B, Meng G, et al. Ancient and modern genomes unravel the evolutionary history of the rhinoceros family. Cell. PMID 34433011 DOI: 10.1016/j.cell.2021.07.032   
2021 Song W, Xu D, Chen X, Warren A, Shin MK, Song W, Li L. Overview of the Diversity, Phylogeny and Biogeography of Strombidiid Oligotrich Ciliates (Protista, Ciliophora), With a Brief Revision and a Key to the Known Genera. Frontiers in Microbiology. 12: 700940. PMID 34603227 DOI: 10.3389/fmicb.2021.700940   
2021 Flores JR, Bippus AC, Suárez GM, Hyvönen J. Defying death: incorporating fossils into the phylogeny of the complex thalloid liverworts (Marchantiidae, Marchantiophyta) confirms high order clades but reveals discrepancies in family-level relationships. Cladistics : the International Journal of the Willi Hennig Society. 37: 231-247. PMID 34478198 DOI: 10.1111/cla.12442   
2021 He K, Chen X, Qiu YB, Liu Z, Wang WZ, Woodman N, Maldonado JE, Pan X. Mitogenome and phylogenetic analyses support rapid diversification among species groups of small-eared shrews genus (Mammalia: Eulipotyphla: Soricidae). Zoological Research. 42: 739-745. PMID 34636193 DOI: 10.24272/j.issn.2095-8137.2021.199   
2021 Achatz TJ, Martens JR, Kostadinova A, Pulis EE, Orlofske SA, Bell JA, Fecchio A, Oyarzún-Ruiz P, Syrota YY, Tkach VV. Molecular phylogeny of Diplostomum, Tylodelphys, Austrodiplostomum and Paralaria (Digenea: Diplostomidae) necessitates systematic changes and reveals a history of evolutionary host switching events. International Journal For Parasitology. PMID 34371018 DOI: 10.1016/j.ijpara.2021.06.002   
2021 Wertheim JO, Steel M, Sanderson MJ. Accuracy in near-perfect virus phylogenies. Systematic Biology. PMID 34398231 DOI: 10.1093/sysbio/syab069   
2021 Gippner S, Travers SL, Scherz MD, Colston TJ, Lyra ML, Mohan AV, Multzsch M, Nielsen SV, Rancilhac L, Glaw F, Bauer AM, Vences M. A comprehensive phylogeny of dwarf geckos of the genus Lygodactylus, with insights into their systematics and morphological variation. Molecular Phylogenetics and Evolution. 107311. PMID 34530117 DOI: 10.1016/j.ympev.2021.107311   
2021 Edwards HM, Rhodes J. Accounting for the Biological Complexity of Pathogenic Fungi in Phylogenetic Dating. Journal of Fungi (Basel, Switzerland). 7. PMID 34436200 DOI: 10.3390/jof7080661   
2021 Johnson KP, Weckstein JD, Virrueta Herrera S, Doña J. The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus. Molecular Phylogenetics and Evolution. 107297. PMID 34438049 DOI: 10.1016/j.ympev.2021.107297   
2021 Wagner ND, Volf M, Hörandl E. Highly Diverse Shrub Willows ( L.) Share Highly Similar Plastomes. Frontiers in Plant Science. 12: 662715. PMID 34539686 DOI: 10.3389/fpls.2021.662715   
2021 Varsani A, Opriessnig T, Celer V, Maggi F, Okamoto H, Blomström AL, Cadar D, Harrach B, Biagini P, Kraberger S. Taxonomic update for mammalian anelloviruses (family Anelloviridae). Archives of Virology. 166: 2943-2953. PMID 34383165 DOI: 10.1007/s00705-021-05192-x   
2021 Gowri Shankar P, Swamy P, Williams RC, Ganesh SR, Moss M, Höglund J, Das I, Sahoo G, Vijayakumar SP, Shanker K, Wüster W, Dutta SK. King or royal family? Testing for species boundaries in the King Cobra, Ophiophagus hannah (Cantor, 1836), using morphology and multilocus DNA analyses. Molecular Phylogenetics and Evolution. 107300. PMID 34474153 DOI: 10.1016/j.ympev.2021.107300   
2021 M Lyra G, Iha C, Grassa CJ, Cai L, Zhang H, Lane C, Blouin N, Oliveira MC, Marcos de Castro Nunes J, Davis CC. Phylogenomics, divergence time estimation and trait evolution provide a new look into the Gracilariales (Rhodophyta). Molecular Phylogenetics and Evolution. 107294. PMID 34419587 DOI: 10.1016/j.ympev.2021.107294   
2021 Guan JY, Shen SQ, Zhang ZY, Xu XD, Storey KB, Yu DN, Zhang JY. Comparative Mitogenomes of Two Species (Microcoryphia: Machilidae) along with Phylogenetic Analyses of Microcoryphia. Insects. 12. PMID 34564235 DOI: 10.3390/insects12090795   
2021 Cruaud A, Delvare G, Nidelet S, Sauné L, Ratnasingham S, Chartois M, Blaimer BB, Gates M, Brady SG, Faure S, van Noort S, Rossi JP, Rasplus JY. Ultra-Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea). Cladistics : the International Journal of the Willi Hennig Society. 37: 1-35. PMID 34478176 DOI: 10.1111/cla.12416   
2021 Cohen J. Phylogenomics, floral evolution, and biogeography of Lithospermum L. (Boraginaceae). Molecular Phylogenetics and Evolution. 107317. PMID 34547439 DOI: 10.1016/j.ympev.2021.107317   
2021 Drury JP, Clavel J, Tobias JA, Rolland J, Sheard C, Morlon H. Tempo and mode of morphological evolution are decoupled from latitude in birds. Plos Biology. 19: e3001270. PMID 34428214 DOI: 10.1371/journal.pbio.3001270   
2021 Li Y, Wu DD. Finding unknown species in the genomes of extant species. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34509382 DOI: 10.1016/j.jgg.2021.05.013   
2021 Crous PW, Lombard L, Sandoval-Denis M, Seifert KA, Schroers HJ, Chaverri P, Gené J, Guarro J, Hirooka Y, Bensch K, Kema GHJ, Lamprecht SC, Cai L, Rossman AY, Stadler M, et al. : more than a node or a foot-shaped basal cell. Studies in Mycology. 98: 100116. PMID 34466168 DOI: 10.1016/j.simyco.2021.100116   
2021 Knyshov A, Weirauch C, Hoey-Chamberlain R. Phylogenetic relationships and revised classification of the true bug infraorder Dipsocoromorpha (Insecta: Hemiptera: Heteroptera). Cladistics : the International Journal of the Willi Hennig Society. 37: 248-275. PMID 34478197 DOI: 10.1111/cla.12435   
2021 Silvério R Mauad AV, Vieira LDN, Antônio de Baura V, Balsanelli E, Maltempi de Souza E, Chase MW, de Camargo Smidt E. Plastid phylogenomics of Pleurothallidinae (Orchidaceae): Conservative plastomes, new variable markers, and comparative analyses of plastid, nuclear, and mitochondrial data. Plos One. 16: e0256126. PMID 34449781 DOI: 10.1371/journal.pone.0256126   
2021 Hernández F, Brown JI, Kaminski M, Harvey MG, Lavretsky P. Genomic Evidence for Rare Hybridization and Large Demographic Changes in the Evolutionary Histories of Four North American Dove Species. Animals : An Open Access Journal From Mdpi. 11. PMID 34573643 DOI: 10.3390/ani11092677   
2021 Dufayard JF, Bocs S, Guignon V, Larivière D, Louis A, Oubda N, Rouard M, Ruiz M, de Lamotte F. RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. Nar Genomics and Bioinformatics. 3: lqab088. PMID 34568824 DOI: 10.1093/nargab/lqab088   
2021 Martinez-Gutierrez CA, Aylward FO. Phylogenetic Signal, Congruence, and Uncertainty across Bacteria and Archaea. Molecular Biology and Evolution. PMID 34436605 DOI: 10.1093/molbev/msab254   
2021 Qian H, Jin Y. Are phylogenies resolved at the genus level appropriate for studies on phylogenetic structure of species assemblages? Plant Diversity. 43: 255-263. PMID 34485767 DOI: 10.1016/j.pld.2020.11.005   
2021 Mendes SL, Machado MP, Coelho MM, Sousa VC. Genomic data and multi-species demographic modelling uncover past hybridization between currently allopatric freshwater species. Heredity. PMID 34462578 DOI: 10.1038/s41437-021-00466-1   
2021 Yao G, Xue B, Liu K, Li Y, Huang J, Zhai J. Phylogenetic estimation and morphological evolution of Alsineae (Caryophyllaceae) shed new insight into the taxonomic status of the genus . Plant Diversity. 43: 299-307. PMID 34485772 DOI: 10.1016/j.pld.2020.11.001   
2021 Li T, Wong TK, Ranjard L, Rodrigo AG. pgHMA: Application of the Heteroduplex Mobility Assay Analysis in Phylogenetics and Population Genetics. Molecular Ecology Resources. PMID 34551204 DOI: 10.1111/1755-0998.13508   
2021 Trollip C, Carnegie AJ, Dinh Q, Kaur J, Smith D, Mann R, Rodoni B, Edwards J. Ophiostomatoid fungi associated with pine bark beetles and infested pines in south-eastern Australia, including Graphilbum ipis-grandicollis sp. nov. Ima Fungus. 12: 24. PMID 34465398 DOI: 10.1186/s43008-021-00076-w   
2021 Ma Y, Wang M, Wei F, Nie Y. Geographic distributions shape the functional traits in a large mammalian family. Ecology and Evolution. 11: 13175-13185. PMID 34646461 DOI: 10.1002/ece3.8039