Stephen J. Mondo - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Rosling A, Eshghi Sahraei S, Kalsoom Khan F, Desirò A, Bryson AE, Mondo SJ, Grigoriev IV, Bonito G, Sánchez-García M. Evolutionary history of arbuscular mycorrhizal fungi and genomic signatures of obligate symbiosis. Bmc Genomics. 25: 529. PMID 38811885 DOI: 10.1186/s12864-024-10391-2  0.409
2024 Mathieu D, Bryson AE, Hamberger B, Singan V, Keymanesh K, Wang M, Barry K, Mondo S, Pangilinan J, Koriabine M, Grigoriev IV, Bonito G, Hamberger B. Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long-standing interaction among land plants and fungi. The Plant Journal : For Cell and Molecular Biology. PMID 38265362 DOI: 10.1111/tpj.16605  0.315
2023 Longley R, Robinson A, Liber JA, Bryson AE, Morales DP, LaButti K, Riley R, Mondo SJ, Kuo A, Yoshinaga Y, Daum C, Barry K, Grigoriev IV, Desirò A, Chain PSG, et al. Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi. Communications Biology. 6: 948. PMID 37723238 DOI: 10.1038/s42003-023-05299-8  0.445
2023 Amses K, Desiró A, Bryson A, Grigoriev I, Mondo S, Lipzen A, LaButti K, Riley R, Singan V, Salazar-Hamm P, King J, Ballou E, Pawlowska T, Adeleke R, Bonito G, et al. Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi. Fungal Genetics and Biology : Fg & B. 103838. PMID 37716699 DOI: 10.1016/j.fgb.2023.103838  0.734
2023 Gryganskyi AP, Golan J, Muszewska A, Idnurm A, Dolatabadi S, Mondo SJ, Kutovenko VB, Kutovenko VO, Gajdeczka MT, Anishchenko IM, Pawlowska J, Tran NV, Ebersberger I, Voigt K, Wang Y, et al. Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned? Microorganisms. 11. PMID 37513002 DOI: 10.3390/microorganisms11071830  0.716
2023 Wang Y, Chang Y, Ortañez J, Peña JF, Carter-House D, Reynolds NK, Smith ME, Benny G, Mondo SJ, Salamov A, Lipzen A, Pangilinan J, Guo J, LaButti K, Andreopolous W, et al. Divergent evolution of early terrestrial fungi reveals the evolution of Mucormycosis pathogenicity factors. Genome Biology and Evolution. PMID 36930540 DOI: 10.1093/gbe/evad046  0.456
2023 Reynolds NK, Stajich JE, Benny GL, Barry K, Mondo S, LaButti K, Lipzen A, Daum C, Grigoriev IV, Ho HM, Crous PW, Spatafora JW, Smith ME. Mycoparasites, gut dwellers, and saprotrophs: Phylogenomic reconstructions and comparative analyses of Kickxellomycotina fungi. Genome Biology and Evolution. PMID 36617272 DOI: 10.1093/gbe/evac185  0.312
2022 Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, et al. Diploid-dominant life cycles characterize the early evolution of Fungi. Proceedings of the National Academy of Sciences of the United States of America. 119: e2116841119. PMID 36037379 DOI: 10.1073/pnas.2116841119  0.339
2022 Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, et al. Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies. Iscience. 25: 104840. PMID 35996588 DOI: 10.1016/j.isci.2022.104840  0.406
2022 Ata JP, Ibarra Caballero JR, Abdo Z, Mondo SJ, Stewart JE. Transitions of foliar mycobiota community and transcriptome in response to pathogenic conifer needle interactions. Scientific Reports. 12: 7832. PMID 35551491 DOI: 10.1038/s41598-022-11907-0  0.331
2022 Wyka S, Mondo S, Liu M, Nalam V, Broders K. A large accessory genome and high recombination rates may influence global distribution and broad host range of the fungal plant pathogen Claviceps purpurea. Plos One. 17: e0263496. PMID 35143550 DOI: 10.1371/journal.pone.0263496  0.353
2021 Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, et al. Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes. The New Phytologist. PMID 34797921 DOI: 10.1111/nph.17873  0.508
2021 Crowell CR, Wilkerson DG, Beckauri M, Cala AR, McMullen PW, Mondo S, Andreopoulos W, Lipzen A, Lail K, Yan M, Ng V, Grigoriev IV, Smart LB, Smart CD. The population on in the Great Lakes region is highly diverse with a contributory influence of clonality. Phytopathology. PMID 34579556 DOI: 10.1094/PHYTO-05-21-0201-R  0.351
2021 Wyka SA, Mondo SJ, Liu M, Dettman J, Nalam V, Broders KD. Whole genome comparisons of ergot fungi reveals the divergence and evolution of species within the genus Claviceps are the result of varying mechanisms driving genome evolution and host range expansion. Genome Biology and Evolution. PMID 33512490 DOI: 10.1093/gbe/evaa267  0.426
2020 Carter ME, Carpenter SCD, Dubrow ZE, Sabol MR, Rinaldi FC, Lastovetsky OA, Mondo SJ, Pawlowska TE, Bogdanove AJ. A TAL effector-like protein of an endofungal bacterium increases the stress tolerance and alters the transcriptome of the host. Proceedings of the National Academy of Sciences of the United States of America. PMID 32632014 DOI: 10.1073/Pnas.2003857117  0.749
2020 Espino-Vázquez AN, Bermúdez-Barrientos JR, Cabrera-Rangel JF, Córdova-López G, Cardoso-Martínez F, Martínez-Vázquez A, Camarena-Pozos DA, Mondo SJ, Pawlowska TE, Abreu-Goodger C, Partida-Martínez LP. Narnaviruses: novel players in fungal-bacterial symbioses. The Isme Journal. PMID 32269378 DOI: 10.1038/S41396-020-0638-Y  0.734
2020 Haridas S, Albert R, Binder M, Bloem J, LaButti K, Salamov A, Andreopoulos B, Baker SE, Barry K, Bills G, Bluhm BH, Cannon C, Castanera R, Culley DE, Daum C, ... ... Mondo SJ, et al. 101 genomes: A test case for predicting lifestyles and emergence of pathogens. Studies in Mycology. 96: 141-153. PMID 32206138 DOI: 10.1016/J.Simyco.2020.01.003  0.394
2020 Kjærbølling I, Vesth T, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun RS, Lubbers RJM, Mäkelä MR, ... ... Mondo S, et al. A comparative genomics study of 23 Aspergillus species from section Flavi. Nature Communications. 11: 1106. PMID 32107379 DOI: 10.1038/S41467-019-14051-Y  0.397
2019 Jiménez DJ, Wang Y, de Mares MC, Cortes-Tolalpa L, Mertens JA, Hector RE, Lin J, Johnson J, Lipzen A, Barry K, Mondo SJ, Grigoriev IV, Nichols NN, van Elsas JD. Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium. Fems Microbiology Ecology. PMID 31769802 DOI: 10.1093/Femsec/Fiz186  0.348
2019 Navarro-Mendoza MI, Pérez-Arques C, Panchal S, Nicolás FE, Mondo SJ, Ganguly P, Pangilinan J, Grigoriev IV, Heitman J, Sanyal K, Garre V. Early Diverging Fungus Mucor circinelloides Lacks Centromeric Histone CENP-A and Displays a Mosaic of Point and Regional Centromeres. Current Biology : Cb. PMID 31679929 DOI: 10.1016/J.Cub.2019.09.024  0.323
2019 Mondo SJ, Jiménez DJ, Hector RE, Lipzen A, Yan M, LaButti K, Barry K, van Elsas JD, Grigoriev IV, Nichols NN. Genome expansion by allopolyploidization in the fungal strain 2T2.1 and its exceptional lignocellulolytic machinery. Biotechnology For Biofuels. 12: 229. PMID 31572496 DOI: 10.1186/S13068-019-1569-6  0.36
2019 Calhoun S, Mondo SJ, Grigoriev IV. Yeasts and how they came to be. Nature Reviews. Microbiology. PMID 31558823 DOI: 10.1038/S41579-019-0274-6  0.347
2019 Krizsán K, Almási É, Merényi Z, Sahu N, Virágh M, Kószó T, Mondo S, Kiss B, Bálint B, Kües U, Barry K, Cseklye J, Hegedüs B, Henrissat B, Johnson J, et al. Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi. Proceedings of the National Academy of Sciences of the United States of America. PMID 30902897 DOI: 10.1073/Pnas.1817822116  0.408
2019 Bewick AJ, Hofmeister BT, Powers RA, Mondo SJ, Grigoriev IV, James TY, Stajich JE, Schmitz RJ. Diversity of cytosine methylation across the fungal tree of life. Nature Ecology & Evolution. PMID 30778188 DOI: 10.1038/S41559-019-0810-9  0.462
2018 Urquhart AS, Mondo SJ, Mäkelä MR, Hane JK, Wiebenga A, He G, Mihaltcheva S, Pangilinan J, Lipzen A, Barry K, de Vries RP, Grigoriev IV, Idnurm A. Genomic and Genetic Insights Into a Cosmopolitan Fungus, (Eurotiales). Frontiers in Microbiology. 9: 3058. PMID 30619145 DOI: 10.3389/Fmicb.2018.03058  0.458
2018 Aguilar-Pontes MV, Brandl J, McDonnell E, Strasser K, Nguyen TTM, Riley R, Mondo S, Salamov A, Nybo JL, Vesth TC, Grigoriev IV, Andersen MR, Tsang A, de Vries RP. The gold-standard genome of NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi. Studies in Mycology. 91: 61-78. PMID 30425417 DOI: 10.1016/J.Simyco.2018.10.001  0.447
2018 Pawlowska TE, Gaspar ML, Lastovetsky OA, Mondo SJ, Real-Ramirez I, Shakya E, Bonfante P. Biology of Fungi and Their Bacterial Endosymbionts. Annual Review of Phytopathology. 56: 289-309. PMID 30149793 DOI: 10.1146/Annurev-Phyto-080417-045914  0.771
2018 Lastovetsky OA, Ahn E, Mondo SJ, Toomer KH, Zhang A, Johnson LM, Pawlowska TE. Distribution and population structure of endobacteria in arbuscular mycorrhizal fungi at North Atlantic dunes. The Isme Journal. PMID 30097664 DOI: 10.1038/S41396-018-0246-2  0.768
2018 Mondo SJ, Kuo RC, Singan VR. Fungal Epigenomics: Detection and Analysis. Methods in Molecular Biology (Clifton, N.J.). 1775: 155-170. PMID 29876817 DOI: 10.1007/978-1-4939-7804-5_14  0.309
2018 Kijpornyongpan T, Mondo SJ, Barry K, Sandor L, Lee J, Lipzen A, Pangilinan J, LaButti K, Hainaut M, Henrissat B, Grigoriev IV, Spatafora JW, Aime MC. Broad genomic sampling reveals a smut pathogenic ancestry of the fungal clade Ustilaginomycotina. Molecular Biology and Evolution. PMID 29771364 DOI: 10.1093/Molbev/Msy072  0.506
2018 Gryganskyi AP, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT, Anike F, Vuek A, Anishchenko IM, Voigt K, et al. Phylogenetic and Phylogenomic Definition of Species. G3 (Bethesda, Md.). PMID 29674435 DOI: 10.1534/G3.118.200235  0.401
2018 Coradetti ST, Pinel D, Geiselman G, Ito M, Mondo S, Reilly MC, Cheng YF, Bauer S, Grigoriev I, Gladden JM, Simmons BA, Brem R, Arkin AP, Skerker JM. Functional genomics of lipid metabolism in the oleaginous yeast. Elife. 7. PMID 29521624 DOI: 10.7554/Elife.32110  0.421
2018 Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, et al. Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species. Proceedings of the National Academy of Sciences of the United States of America. PMID 29317534 DOI: 10.1073/Pnas.1715954115  0.462
2018 Coradetti ST, Pinel D, Geiselman GM, Ito M, Mondo SJ, Reilly MC, Cheng Y, Bauer S, Grigoriev IV, Gladden JM, Simmons BA, Brem RB, Arkin AP, Skerker JM. Author response: Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides Elife. DOI: 10.7554/Elife.32110.041  0.333
2017 Mondo SJ, Lastovetsky OA, Gaspar ML, Schwardt NH, Barber CC, Riley R, Sun H, Grigoriev IV, Pawlowska TE. Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi. Nature Communications. 8: 1843. PMID 29184190 DOI: 10.1038/S41467-017-02052-8  0.753
2017 Aime MC, McTaggart AR, Mondo SJ, Duplessis S. Phylogenetics and Phylogenomics of Rust Fungi. Advances in Genetics. 100: 267-307. PMID 29153402 DOI: 10.1016/Bs.Adgen.2017.09.011  0.479
2017 Haitjema CH, Gilmore SP, Henske JK, Solomon KV, de Groot R, Kuo A, Mondo SJ, Salamov AA, LaButti K, Zhao Z, Chiniquy J, Barry K, Brewer HM, Purvine SO, Wright AT, et al. A parts list for fungal cellulosomes revealed by comparative genomics. Nature Microbiology. 2: 17087. PMID 28555641 DOI: 10.1038/Nmicrobiol.2017.87  0.425
2017 Mondo SJ, Dannebaum RO, Kuo RC, Louie KB, Bewick AJ, LaButti K, Haridas S, Kuo A, Salamov A, Ahrendt SR, Lau R, Bowen BP, Lipzen A, Sullivan W, Andreopoulos BB, et al. Widespread adenine N6-methylation of active genes in fungi. Nature Genetics. PMID 28481340 DOI: 10.1038/Ng.3859  0.44
2017 Raudabaugh DB, Iturriaga T, Carver A, Mondo S, Pangilinan J, Lipzen A, He G, Amirebrahimi M, Grigoriev IV, Miller AN. Coniella lustricola, a new species from submerged detritus Mycological Progress. 17: 191-203. DOI: 10.1007/S11557-017-1337-6  0.429
2016 Lastovetsky OA, Gaspar ML, Mondo SJ, LaButti KM, Sandor L, Grigoriev IV, Henry SA, Pawlowska TE. Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria. Proceedings of the National Academy of Sciences of the United States of America. PMID 27956601 DOI: 10.1073/Pnas.1615148113  0.748
2016 Mondo SJ, Salvioli A, Bonfante P, Morton JB, Pawlowska TE. Nondegenerative evolution in ancient heritable bacterial endosymbionts of fungi. Molecular Biology and Evolution. PMID 27189571 DOI: 10.1093/Molbev/Msw086  0.752
2016 Walker AK, Frasz SL, Seifert KA, Miller JD, Mondo SJ, LaButti K, Lipzen A, Dockter RB, Kennedy MC, Grigoriev IV, Spatafora JW. Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin. Genome Announcements. 4. PMID 26950333 DOI: 10.1128/Genomea.01768-15  0.387
2015 Toomer KH, Chen X, Naito M, Mondo SJ, den Bakker HC, VanKuren NW, Lekberg Y, Morton JB, Pawlowska TE. Molecular evolution patterns reveal life history features of mycoplasma-related endobacteria associated with arbuscular mycorrhizal fungi. Molecular Ecology. 24: 3485-500. PMID 26011293 DOI: 10.1111/Mec.13250  0.739
2014 Desirò A, Salvioli A, Ngonkeu EL, Mondo SJ, Epis S, Faccio A, Kaech A, Pawlowska TE, Bonfante P. Detection of a novel intracellular microbiome hosted in arbuscular mycorrhizal fungi. The Isme Journal. 8: 257-70. PMID 24008325 DOI: 10.1038/Ismej.2013.151  0.774
2012 Mondo SJ, Toomer KH, Morton JB, Lekberg Y, Pawlowska TE. Evolutionary stability in a 400-million-year-old heritable facultative mutualism. Evolution; International Journal of Organic Evolution. 66: 2564-76. PMID 22834753 DOI: 10.1111/J.1558-5646.2012.01611.X  0.748
2010 Pumplin N, Mondo SJ, Topp S, Starker CG, Gantt JS, Harrison MJ. Medicago truncatula Vapyrin is a novel protein required for arbuscular mycorrhizal symbiosis. The Plant Journal : For Cell and Molecular Biology. 61: 482-94. PMID 19912567 DOI: 10.1111/J.1365-313X.2009.04072.X  0.402
2007 Andam CP, Mondo SJ, Parker MA. Monophyly of nodA and nifH genes across Texan and Costa Rican populations of Cupriavidus nodule symbionts. Applied and Environmental Microbiology. 73: 4686-90. PMID 17526782 DOI: 10.1128/Aem.00160-07  0.36
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