Emmanuelle Lerat, PhD - Publications

Affiliations: 
CNRS, Paris, Île-de-France, France 

45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Sellis D, Guérin F, Arnaiz O, Pett W, Lerat E, Boggetto N, Krenek S, Berendonk T, Couloux A, Aury JM, Labadie K, Malinsky S, Bhullar S, Meyer E, Sperling L, et al. Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes. Plos Biology. 19: e3001309. PMID 34324490 DOI: 10.1371/journal.pbio.3001309  0.592
2021 Correa M, Lerat E, Birmelé E, Samson F, Bouillon B, Normand K, Rizzon C. The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality. Genome Biology and Evolution. 13. PMID 33973013 DOI: 10.1093/gbe/evab062  0.544
2020 Lallemand T, Leduc M, Landès C, Rizzon C, Lerat E. An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice. Genes. 11. PMID 32899740 DOI: 10.3390/Genes11091046  0.578
2019 Lerat E, Casacuberta J, Chaparro C, Vieira C. On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses. Genes. 10. PMID 30935103 DOI: 10.3390/Genes10040258  0.566
2019 Lannes R, Rizzon C, Lerat E. Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes? Genes. 10. PMID 30917603 DOI: 10.3390/Genes10030249  0.557
2018 Lerat E, Goubert C, Guirao-Rico S, Merenciano M, Dufour AB, Vieira C, González J. Population specific dynamics and selection patterns of transposable element insertions in European natural populations. Molecular Ecology. PMID 30506554 DOI: 10.1111/Mec.14963  0.445
2017 Bargues N, Lerat E. Evolutionary history of LTR-retrotransposons among 20 Drosophila species. Mobile Dna. 8: 7. PMID 28465726 DOI: 10.1186/S13100-017-0090-3  0.507
2017 Lerat E, Fablet M, Modolo L, Lopez-Maestre H, Vieira C. TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes. Nucleic Acids Research. 45: e17. PMID 28204592 DOI: 10.1093/Nar/Gkw953  0.561
2016 Moulin S, Seux N, Chrétien S, Guyeux C, Lerat E. Simulation-based estimation of branching models for LTR retrotransposons. Bioinformatics (Oxford, England). PMID 28011770 DOI: 10.1093/Bioinformatics/Btw622  0.432
2016 Lerat E, Fablet M, Modolo L, Lopez-Maestre H, Vieira C. TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes. Nucleic Acids Research. PMID 27924026 DOI: 10.1093/nar/gkw953  0.495
2016 Grégoire L, Haudry A, Lerat E. The transposable element environment of human genes is associated with histone and expression changes in cancer. Bmc Genomics. 17: 588. PMID 27506777 DOI: 10.1186/S12864-016-2970-1  0.54
2015 Belkorchia A, Gasc C, Polonais V, Parisot N, Gallois N, Ribière C, Lerat E, Gaspin C, Pombert JF, Peyret P, Peyretaillade E. The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes. Plos One. 10: e0139075. PMID 26421846 DOI: 10.1371/Journal.Pone.0139075  0.582
2015 Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6  0.407
2015 Peyretaillade E, Boucher D, Parisot N, Gasc C, Butler R, Pombert JF, Lerat E, Peyret P. Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems. Heredity. 114: 441-9. PMID 25182222 DOI: 10.1038/hdy.2014.78  0.392
2014 Parisot N, Pelin A, Gasc C, Polonais V, Belkorchia A, Panek J, El Alaoui H, Biron DG, Brasset E, Vaury C, Peyret P, Corradi N, Peyretaillade É, Lerat E. Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans. Genome Biology and Evolution. 6: 2289-300. PMID 25172905 DOI: 10.1093/Gbe/Evu178  0.588
2014 Carnelossi EAG, Lerat E, Henri H, Martinez S, Carareto CMA, Vieira C. Specific activation of an I-like element in Drosophila interspecific hybrids Genome Biology and Evolution. 6: 1806-1817. PMID 24966182 DOI: 10.1093/Gbe/Evu141  0.418
2014 Blanc S, Ruggiero F, Birot AM, Acloque H, Décimo D, Lerat E, Ohlmann T, Samarut J, Mey A. Subcellular localization of ENS-1/ERNI in chick embryonic stem cells Plos One. 9. PMID 24643087 DOI: 10.1371/Journal.Pone.0092039  0.318
2014 Modolo L, Picard F, Lerat E. A new genome-wide method to track horizontally transferred sequences: Application to Drosophila Genome Biology and Evolution. 6: 416-432. PMID 24497602 DOI: 10.1093/Gbe/Evu026  0.456
2014 Bailly-Bechet M, Haudry A, Lerat E. "One code to find them all": A perl tool to conveniently parse RepeatMasker output files Mobile Dna. 5. DOI: 10.1186/1759-8753-5-13  0.509
2012 Vieira C, Fablet M, Lerat E, Boulesteix M, Rebollo R, Burlet N, Akkouche A, Hubert B, Mortada H, Biémont C. A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans Journal of Environmental Radioactivity. 113: 83-86. PMID 22659421 DOI: 10.1016/J.Jenvrad.2012.04.001  0.569
2011 Lerat E. The French way of life of mobile DNA: Meeting report on the 17 French Congress on transposable elements (Lyon, July 4-6 2011). Mobile Genetic Elements. 1: 89-91. PMID 22016853 DOI: 10.4161/Mge.1.2.17455  0.381
2011 Lerat E, Burlet N, Biémont C, Vieira C. Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes Gene. 473: 100-109. PMID 21156200 DOI: 10.1016/J.Gene.2010.11.009  0.434
2010 Mortada H, Vieira C, Lerat E. Genes devoid of full-length transposable element insertions are involved in development and in the regulation of transcription in human and closely related species Journal of Molecular Evolution. 71: 180-191. PMID 20798934 DOI: 10.1007/S00239-010-9376-5  0.532
2010 Lerat E. Identifying repeats and transposable elements in sequenced genomes: How to find your way through the dense forest of programs Heredity. 104: 520-533. PMID 19935826 DOI: 10.1038/Hdy.2009.165  0.481
2009 Granzotto A, Lopes FR, Lerat E, Vieira C, Carareto CM. The evolutionary dynamics of the Helena retrotransposon revealed by sequenced Drosophila genomes. Bmc Evolutionary Biology. 9: 174. PMID 19624823 DOI: 10.1186/1471-2148-9-174  0.555
2009 Deloger M, Cavalli FMG, Lerat E, Biémont C, Sagot MF, Vieira C. Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster Gene. 439: 55-62. PMID 19332112 DOI: 10.1016/J.Gene.2009.03.015  0.601
2009 Fablet M, Lerat E, Rebollo R, Horard B, Burlet N, Martinez S, Milie Brasset E, Gilson E, Vaury C, Vieira C. Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila Faseb Journal. 23: 1482-1489. PMID 19141532 DOI: 10.1096/Fj.08-123513  0.536
2008 Rebollo R, Lerat E, Kleine LL, Biémont C, Vieira C. Losing helena: The extinction of a drosophila line-like element Bmc Genomics. 9. PMID 18377637 DOI: 10.1186/1471-2164-9-149  0.479
2007 Lerat E, Birot AM, Samarut J, Mey A. Maintenance in the chicken genome of the retroviral-like cENS gene family specifically expressed in early embryos Journal of Molecular Evolution. 65: 215-227. PMID 17671751 DOI: 10.1007/S00239-007-9001-4  0.546
2007 Lerat E, Sémon M. Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues Gene. 396: 303-311. PMID 17490832 DOI: 10.1016/J.Gene.2007.04.002  0.501
2006 Daubin V, Lerat E. Evolution of the core of genes Prokaryotic Diversity: Mechanisms and Significance: Published For the Society For General Microbiology. 123-130. DOI: 10.1017/CBO9780511754913.008  0.342
2005 Lerat E, Ochman H. Recognizing the pseudogenes in bacterial genomes. Nucleic Acids Research. 33: 3125-32. PMID 15933207 DOI: 10.1093/Nar/Gki631  0.593
2005 Ochman H, Lerat E, Daubin V. Examining bacterial species under the specter of gene transfer and exchange. Proceedings of the National Academy of Sciences of the United States of America. 102: 6595-9. PMID 15851673 DOI: 10.1073/Pnas.0502035102  0.569
2005 Lerat E, Daubin V, Ochman H, Moran NA. Evolutionary origins of genomic repertoires in bacteria. Plos Biology. 3: e130. PMID 15799709 DOI: 10.1371/Journal.Pbio.0030130  0.686
2005 Ochman H, Daubin V, Lerat E. A bunch of fun-guys: the whole-genome view of yeast evolution. Trends in Genetics : Tig. 21: 1-3. PMID 15680504 DOI: 10.1016/J.Tig.2004.11.006  0.586
2004 Edvardsen RB, Lerat E, Maeland AD, FlÃ¥t M, Tewari R, Jensen MF, Lehrach H, Reinhardt R, Seo HC, Chourrout D. Hypervariable and highly divergent intron-exon organizations in the chordate Oikopleura dioica. Journal of Molecular Evolution. 59: 448-57. PMID 15638456 DOI: 10.1007/S00239-004-2636-5  0.549
2004 Lerat E, Ochman H. Psi-Phi: exploring the outer limits of bacterial pseudogenes. Genome Research. 14: 2273-8. PMID 15479949 DOI: 10.1101/Gr.2925604  0.621
2004 Lerat E, Moran NA. The evolutionary history of quorum-sensing systems in bacteria. Molecular Biology and Evolution. 21: 903-13. PMID 15014168 DOI: 10.1093/Molbev/Msh097  0.614
2003 Lerat E, Daubin V, Moran NA. From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria. Plos Biology. 1: E19. PMID 12975657 DOI: 10.1371/Journal.Pbio.0000019  0.684
2003 Daubin V, Lerat E, Perrière G. The source of laterally transferred genes in bacterial genomes. Genome Biology. 4: R57. PMID 12952536 DOI: 10.1186/Gb-2003-4-9-R57  0.608
2003 Lerat E, Rizzon C, Biémont C. Sequence divergence within transposable element families in the Drosophila melanogaster genome Genome Research. 13: 1889-1896. PMID 12869581 DOI: 10.1101/Gr.827603  0.56
2002 Lerat E, Capy P, Biémont C. The relative abundance of dinucleotides in transposable elements in five species. Molecular Biology and Evolution. 19: 964-7. PMID 12032253 DOI: 10.1093/Oxfordjournals.Molbev.A004154  0.537
2002 Lerat E, Capy P, Biémont C. Codon usage by transposable elements and their host genes in five species. Journal of Molecular Evolution. 54: 625-37. PMID 11965435 DOI: 10.1007/S00239-001-0059-0  0.584
1999 Lerat E, Brunet F, Bazin C, Capy P. Is the evolution of transposable elements modular? Genetica. 107: 15-25. PMID 10952194 DOI: 10.1023/A:1004026821539  0.408
1999 Lerat E, Capy P. Retrotransposons and retroviruses: analysis of the envelope gene. Molecular Biology and Evolution. 16: 1198-207. PMID 10486975 DOI: 10.1093/Oxfordjournals.Molbev.A026210  0.506
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