Michael McKibben - Related publications

Affiliations: 
2019- Department of Ecology & Evolutionary Biology University of Arizona, Tucson, AZ 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Safder I, Shao G, Sheng Z, Hu P, Tang S. Genome-wide identification studies - A primer to explore new genes in plant species. Plant Biology (Stuttgart, Germany). PMID 34558163 DOI: 10.1111/plb.13340   
2021 Schmitz RJ, Marand AP, Zhang X, Mosher RA, Turck F, Chen X, Axtell MJ, Zhong X, Brady SM, Megraw M, Meyers BC. Quality control and evaluation of plant epigenomics data. The Plant Cell. PMID 34648025 DOI: 10.1093/plcell/koab255   
2021 Cui M, Lin L, Guo H, Zhang D, Zhang J, Cheng W, Song X, Xing Z, Long Y. /computational analysis of mevalonate pyrophosphate decarboxylase gene families in . Open Life Sciences. 16: 1022-1036. PMID 34616915 DOI: 10.1515/biol-2021-0103   
2021 Yuan XL, Zhang CS, Kong FY, Zhang ZF, Wang FL. Genome Analysis of JM01 Provides Insights into Its Pathogenicity Mechanisms. Plants (Basel, Switzerland). 10. PMID 34451665 DOI: 10.3390/plants10081620   
2021 Singh S, Chhapekar SS, Ma Y, Rameneni JJ, Oh SH, Kim J, Lim YP, Choi SR. Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in , , and and Their Expression Profiling in in Response to Multiple Hormones and Abiotic Stresses. International Journal of Molecular Sciences. 22. PMID 34638707 DOI: 10.3390/ijms221910367   
2021 Shirasawa K, Harada D, Hirakawa H, Isobe S, Kole C. Chromosome-level genome assemblies of over 100 plant species. Breeding Science. 71: 117-124. PMID 34377059 DOI: JST.JSTAGE/jsbbs/20146   
2021 Driguez P, Bougouffa S, Carty K, Putra A, Jabbari K, Reddy M, Soppe R, Cheung MS, Fukasawa Y, Ermini L. LeafGo: Leaf to Genome, a quick workflow to produce high-quality de novo plant genomes using long-read sequencing technology. Genome Biology. 22: 256. PMID 34479618 DOI: 10.1186/s13059-021-02475-z   
2021 Hao Z, Li Y, Jiang Y, Xu J, Li J, Luo L. Genome Sequence Analysis of the Fungal Pathogen Using Oxford Nanopore Technology. Journal of Fungi (Basel, Switzerland). 7. PMID 34575738 DOI: 10.3390/jof7090699   
2021 Hu Q, Ma Y, Mandáková T, Shi S, Chen C, Sun P, Zhang L, Feng L, Zheng Y, Feng X, Yang W, Jiang J, Li T, Zhou P, Yu Q, et al. Genome evolution of the psammophyte for desert adaptation and further speciation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34649989 DOI: 10.1073/pnas.2025711118   
2021 Ding Y, Zhu J, Zhao D, Liu Q, Yang Q, Zhang T. Targeting -Regulatory Elements for Rice Grain Quality Improvement. Frontiers in Plant Science. 12: 705834. PMID 34456947 DOI: 10.3389/fpls.2021.705834   
2021 Li Y, Liu H, Zou J. Complete chloroplast genome of : a species endemic to Guizhou, China. Mitochondrial Dna. Part B, Resources. 6: 2596-2598. PMID 34395889 DOI: 10.1080/23802359.2021.1961625   
2021 Liang J, An T, Zhu JX, Chen S, Zhu JH, Peters RJ, Yu R, Zi J. Mining of the Genome Leads to Identification of a Biosynthetic Gene Cluster for Fungicidal Sesquiterpenes. Journal of Natural Products. PMID 34644092 DOI: 10.1021/acs.jnatprod.1c00588   
2021 Tang J, Zhao B, Li C, Hong X. Complete chloroplast genome sequence of an endangered plant (Gesneriaceae) from Guangxi, China. Mitochondrial Dna. Part B, Resources. 6: 2936-2938. PMID 34553048 DOI: 10.1080/23802359.2021.1973918   
2021 Wijayasekara D, Ali A. Evolutionary study of maize dwarf mosaic virus using nearly complete genome sequences acquired by next-generation sequencing. Scientific Reports. 11: 18786. PMID 34552152 DOI: 10.1038/s41598-021-98299-9   
2021 Waseem M, Aslam MM, Shaheen I. The DUF221 domain-containing (DDP) genes identification and expression analysis in tomato under abiotic and phytohormone stress. Gm Crops & Food. 1-14. PMID 34379048 DOI: 10.1080/21645698.2021.1962207   
2021 Shan Y, Pei X, Yong S, Li J, Qin Q, Zeng S, Yu J. Analysis of the complete chloroplast genomes of and (Lamiaceae). Mitochondrial Dna. Part B, Resources. 6: 2672-2680. PMID 34435116 DOI: 10.1080/23802359.2021.1920491   
2021 Jiang N, Hu S, Peng B, Li Z, Yuan X, Xiao S, Fu Y. Genome of Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for . Frontiers in Microbiology. 12: 724451. PMID 34603250 DOI: 10.3389/fmicb.2021.724451   
2021 Koseoglou E, van der Wolf JM, Visser RGF, Bai Y. Susceptibility reversed: modified plant susceptibility genes for resistance to bacteria. Trends in Plant Science. PMID 34400073 DOI: 10.1016/j.tplants.2021.07.018   
2021 Utomo JC, Hodgins CL, Ro DK. Multiplex Genome Editing in Yeast by CRISPR/Cas9 - A Potent and Agile Tool to Reconstruct Complex Metabolic Pathways. Frontiers in Plant Science. 12: 719148. PMID 34421973 DOI: 10.3389/fpls.2021.719148   
2021 Wei F, Wang D, Fan S, Shi J, Cai X, Li Y, Ma Y, Wen Y, Feng J. Complete Genome Sequence Resource for Causing Crown Infection Pockets in Strawberry. Molecular Plant-Microbe Interactions : Mpmi. PMID 34645282 DOI: 10.1094/MPMI-05-21-0123-A   
2021 Zhang L, Wang S, Su C, Harris AJ, Zhao L, Su N, Wang JR, Duan L, Chang ZY. Comparative Chloroplast Genomics and Phylogenetic Analysis of (Zygophyllaceae) of China. Frontiers in Plant Science. 12: 723622. PMID 34630471 DOI: 10.3389/fpls.2021.723622   
2021 Zhuo W, Wang L, Zhu X, Lu S, Ren F. Characterization of the first chloroplast genome of and its phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2991-2992. PMID 34568557 DOI: 10.1080/23802359.2021.1975506   
2021 Zeng Q, Liu J, Wang C, Wang H, Zhang L, Hu J, Bao L, Wang S. High-quality reannotation of the king scallop genome reveals no 'gene-rich' feature and evolution of toxin resistance. Computational and Structural Biotechnology Journal. 19: 4954-4960. PMID 34527199 DOI: 10.1016/j.csbj.2021.08.038   
2021 Alabi N, Wu Y, Bossdorf O, Rieseberg LH, Colautti RI. Genome Report: A draft genome of Alliaria petiolata (garlic mustard) as a model system for invasion genetics. G3 (Bethesda, Md.). PMID 34599816 DOI: 10.1093/g3journal/jkab339   
2021 Liu J, Wang J, Wang M, Zhao J, Zheng Y, Zhang T, Xue L, Lei J. Genome-Wide Analysis of the R2R3-MYB Gene Family in × and Its Function Identification During Anthocyanins Biosynthesis in Pink-Flowered Strawberry. Frontiers in Plant Science. 12: 702160. PMID 34527006 DOI: 10.3389/fpls.2021.702160   
2021 Ulaszewski B, Meger J, Mishra B, Thines M, Burczyk J. Complete Chloroplast Genomes of L. Reveal Sequence Conservation in the Inverted Repeat and the Presence of Allelic Variation in NUPTs. Genes. 12. PMID 34573338 DOI: 10.3390/genes12091357   
2021 Basso MF, Duarte KE, Santiago TR, de Souza WR, Garcia BO, da Cunha BDB, Kobayashi AK, Molinari HBC. Efficient genome editing and gene knockout in with CRISPR/Cas9 directed gene editing by the non-homologous end-joining pathway. Plant Biotechnology (Tokyo, Japan). 38: 227-238. PMID 34393601 DOI: 10.5511/plantbiotechnology.21.0407a   
2021 Yuan J, Shi G, Yang Y, Braynen J, Shi X, Wei X, Hao Z, Zhang X, Yuan Y, Tian B, Xie Z, Wei F. Non-homologous chromosome pairing during meiosis in haploid Brassica rapa. Plant Cell Reports. PMID 34542669 DOI: 10.1007/s00299-021-02786-2   
2021 Zhang Y, Deng C, Yang J, Wang D, Deng G. The complete chloroplast genome of a medicinal plant Burm.f. (Loranthaceae). Mitochondrial Dna. Part B, Resources. 6: 2635-2637. PMID 34435106 DOI: 10.1080/23802359.2021.1962760   
2021 Molla KA, Sretenovic S, Bansal KC, Qi Y. Precise plant genome editing using base editors and prime editors. Nature Plants. 7: 1166-1187. PMID 34518669 DOI: 10.1038/s41477-021-00991-1   
2021 Fang Y, Jiang J, Du Q, Luo L, Li X, Xie X. Cytochrome P450 Superfamily: Evolutionary and Functional Divergence in Sorghum () Stress Resistance. Journal of Agricultural and Food Chemistry. PMID 34495670 DOI: 10.1021/acs.jafc.1c03701   
2021 Wang J, Zi H, Wang R, Liu J, Wang H, Chen R, Li L, Guo H, Chen J, Li J, Zong J. A high-quality chromosome-scale assembly of the centipedegrass [Eremochloa ophiuroides (Munro) Hack.] genome provides insights into chromosomal structural evolution and prostrate growth habit. Horticulture Research. 8: 201. PMID 34465733 DOI: 10.1038/s41438-021-00636-6   
2021 Lee JH, Siddique MI, Kwon JK, Kang BC. Comparative Genomic Analysis Reveals Genetic Variation and Adaptive Evolution in the Pathogenicity-Related Genes of . Frontiers in Microbiology. 12: 694136. PMID 34484141 DOI: 10.3389/fmicb.2021.694136   
2021 Chen H, Chong X, Zhou Y, Sun L, Zhang F, Lu X, Li N, Zhou T, Li Y. Characterization and phylogenetic analysis of the complete chloroplast genome of , traditional Chinese medicine plant. Mitochondrial Dna. Part B, Resources. 6: 2791-2792. PMID 34514128 DOI: 10.1080/23802359.2021.1967804   
2021 He Y, Ma H, Wang R, Gai X, Lin P, Zhang J, Shen Y. The complete chloroplast genome of Harv. Mitochondrial Dna. Part B, Resources. 6: 2654-2656. PMID 34435109 DOI: 10.1080/23802359.2021.1959449   
2021 Contreras-Moreira B, Filippi CV, Naamati G, García Girón C, Allen JE, Flicek P. K-mer counting and curated libraries drive efficient annotation of repeats in plant genomes. The Plant Genome. e20143. PMID 34562304 DOI: 10.1002/tpg2.20143   
2021 Yamit BL, Esther S, Metsada PC, Yuval S. De novo transcriptome characterization of Iris atropurpurea (the Royal Iris) and phylogenetic analysis of MADS-box and R2R3-MYB gene families. Scientific Reports. 11: 16246. PMID 34376711 DOI: 10.1038/s41598-021-95085-5   
2021 Lee SC, Martienssen RA. Regulation of retrotransposition in Arabidopsis. Biochemical Society Transactions. PMID 34495315 DOI: 10.1042/BST20210337   
2021 Wang Y, Zhang Y, Li C, Zhao B. Characterization of the complete chloroplast genome of (Asparagaceae). Mitochondrial Dna. Part B, Resources. 6: 2754-2756. PMID 34471695 DOI: 10.1080/23802359.2021.1967801   
2021 Vega-Estévez S, Armitage A, Bates HJ, Harrison RJ, Buscaino A. The Genome of the CTG(Ser1) Yeast Is Plastic. Mbio. e0187121. PMID 34488452 DOI: 10.1128/mBio.01871-21   
2021 Ren F, Wang L, Zhuo W, Lu S, Zhu X, Liu C, Yang M. First complete chloroplast genome of the rare medicinal plant . Mitochondrial Dna. Part B, Resources. 6: 2993-2994. PMID 34568558 DOI: 10.1080/23802359.2021.1975507   
2021 Zhang X, Sun Y, Landis JB, Shen J, Zhang H, Kuang T, Sun W, Sun J, Tiamiyu BB, Deng T, Sun H, Wang H. Transcriptomes of (Asteraceae) Provide Insights into High-Altitude Adaptation. Plants (Basel, Switzerland). 10. PMID 34451759 DOI: 10.3390/plants10081715   
2021 Jiang M, Zhu Y, Wu Q, Zhang H. Complete chloroplast genome of a rare and endangered plant species : genomic features and phylogenetic relationship within Orchidaceae. Mitochondrial Dna. Part B, Resources. 6: 2872-2879. PMID 34532575 DOI: 10.1080/23802359.2021.1972049   
2021 Kesawat MS, Kherawat BS, Singh A, Dey P, Kabi M, Debnath D, Saha D, Khandual A, Rout S, Manorama, Ali A, Palem RR, Gupta R, Kadam AA, Kim HU, et al. Genome-Wide Identification and Characterization of the Brassinazole-resistant () Gene Family and Its Expression in the Various Developmental Stage and Stress Conditions in Wheat ( L.). International Journal of Molecular Sciences. 22. PMID 34445448 DOI: 10.3390/ijms22168743   
2021 Chong X, Zhang F, Li Y, Wang C, Zhou Y, Zhou T, Wang Y, Lu X, Chen H. Complete chloroplast genome sequence and phylogenetic analysis of × 'Fosteri' (Aquifoliaceae). Mitochondrial Dna. Part B, Resources. 6: 2799-2800. PMID 34514131 DOI: 10.1080/23802359.2021.1970637   
2021 Ma X, Yan H, Yang J, Liu Y, Li Z, Sheng M, Cao Y, Yu X, Yi X, Xu W, Su Z. PlantGSAD: a comprehensive gene set annotation database for plant species. Nucleic Acids Research. PMID 34534340 DOI: 10.1093/nar/gkab794   
2021 Luo Y, Na R, Nowak JS, Qiu Y, Lu QS, Yang C, Marsolais F, Tian L. Development of a Csy4-processed guide RNA delivery system with soybean-infecting virus ALSV for genome editing. Bmc Plant Biology. 21: 419. PMID 34517842 DOI: 10.1186/s12870-021-03138-8   
2021 Malhotra EV, Jain R, Bansal S, Mali SC, Sharma N, Agrawal A. Development of a new set of genic SSR markers in the genus : in silico mining, characterization and validation. 3 Biotech. 11: 430. PMID 34527507 DOI: 10.1007/s13205-021-02969-4   
2021 Zhang Y, Zhang GQ, Zhang D, Liu XD, Xu XY, Sun WH, Yu X, Zhu X, Wang ZW, Zhao X, Zhong WY, Chen H, Yin WL, Huang T, Niu SC, et al. Chromosome-scale assembly of the Dendrobium chrysotoxum genome enhances the understanding of orchid evolution. Horticulture Research. 8: 183. PMID 34465765 DOI: 10.1038/s41438-021-00621-z   
2021 Qu Y, Wang Q, Yu Y, Fu X. Comparative analysis of the complete chloroplast genome between tetraploidy and diploidy of (Batal.) Iljinskaja. Mitochondrial Dna. Part B, Resources. 6: 2669-2671. PMID 34435115 DOI: 10.1080/23802359.2021.1964402