Yiji Xia, Ph.D - Publications

Affiliations: 
1997 Hong Kong Baptist University 

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Wang Q, Bao X, Chen S, Zhong H, Liu Y, Zhang L, Xia Y, Kragler F, Luo M, Li XD, Lam HM, Zhang S. AtHDA6 functions as an H3K18ac eraser to maintain pericentromeric CHG methylation in Arabidopsis thaliana. Nucleic Acids Research. PMID 34403482 DOI: 10.1093/nar/gkab706  1
2021 Zhang H, Zhong H, Wang X, Zhang S, Shao X, Hu H, Yu Z, Cai Z, Chen X, Xia Y. Use of NAD tagSeq II to identify growth phase-dependent alterations in RNA NAD capping. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33782135 DOI: 10.1073/pnas.2026183118  1
2021 Hu H, Flynn N, Zhang H, You C, Hang R, Wang X, Zhong H, Chan Z, Xia Y, Chen X. SPAAC-NAD-seq, a sensitive and accurate method to profile NAD-capped transcripts. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33753511 DOI: 10.1073/pnas.2025595118  1
2021 Jiao Z, Tian Y, Cao Y, Wang J, Zhan B, Zhao Z, Sun B, Guo C, Ma W, Liao Z, Zhang H, Zhou T, Xia Y, Fan Z. A novel pathogenicity determinant hijacks maize catalase 1 to enhance viral multiplication and infection. The New Phytologist. PMID 33458828 DOI: 10.1111/nph.17206  1
2020 Shao X, Zhang H, Yang Z, Zhong H, Xia Y, Cai Z. NAD tagSeq for transcriptome-wide identification and characterization of NAD-capped RNAs. Nature Protocols. PMID 32747820 DOI: 10.1038/S41596-020-0363-Z  1
2020 Zhang S, Li R, Zhang L, Chen S, Xie M, Yang L, Xia Y, Foyer CH, Zhao Z, Lam HM. New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs. Nucleic Acids Research. PMID 32652016 DOI: 10.1093/Nar/Gkaa588  1
2020 Guan D, Yan B, Thieme C, Hua J, Zhu H, Boheler KR, Zhao Z, Kragler F, Xia Y, Zhang S. PlaMoM: a comprehensive database compiles plant mobile macromolecules. Nucleic Acids Research. PMID 32556150 DOI: 10.1093/nar/gkaa538  1
2020 Ding Y, Ding L, Xia Y, Wang F, Zhu C. Emerging roles of microRNAs in plant heavy metal tolerance and homeostasis. Journal of Agricultural and Food Chemistry. PMID 32003983 DOI: 10.1021/Acs.Jafc.9B07468  1
2019 Pan S, Li K, Huang W, Zhong H, Wu H, Wang Y, Zhang H, Cai Z, Guo H, Chen X, Xia Y. Functions of Arabidopsis DXO1Arabidopsis DXO1 possesses deNADding and exonuclease activities and its mutation affects defense-related and photosynthetic gene expression. Journal of Integrative Plant Biology. PMID 31449356 DOI: 10.1111/Jipb.12867  1
2019 Li Y, Liu W, Zhong H, Zhang HL, Xia Y. Redox-sensitive bZIP68 plays a role in balancing stress tolerance with growth in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. PMID 31348568 DOI: 10.1111/Tpj.14476  1
2019 Guan D, Xia Y, Zhang S. Analyzing and Predicting Phloem Mobility of Macromolecules with an Online Database. Methods in Molecular Biology (Clifton, N.J.). 2014: 433-438. PMID 31197814 DOI: 10.1007/978-1-4939-9562-2_33  1
2019 Wang Y, Li S, Zhao Y, You C, Le B, Gong Z, Mo B, Xia Y, Chen X. NAD-capped RNAs are widespread in the transcriptome and can probably be translated. Proceedings of the National Academy of Sciences of the United States of America. PMID 31142655 DOI: 10.1073/Pnas.1903682116  1
2019 Zhang H, Zhong H, Zhang S, Shao X, Ni M, Cai Z, Chen X, Xia Y. NAD tagSeq reveals that NAD-capped RNAs are mostly produced from a large number of protein-coding genes in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31142650 DOI: 10.1073/Pnas.1903683116  1
2018 Huang W, Zhao C, Zhong H, Zhang S, Xia Y, Cai Z. Bisphenol S induced epigenetic and transcriptional changes in human breast cancer cell line MCF-7. Environmental Pollution (Barking, Essex : 1987). 246: 697-703. PMID 30616060 DOI: 10.1016/J.Envpol.2018.12.084  1
2018 Zhang S, Zhang H, Xia Y, Xiong L. The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts. Bmc Plant Biology. 18: 192. PMID 30208840 DOI: 10.1186/S12870-018-1396-0  1
2017 Chung KP, Zeng Y, Li Y, Ji C, Xia Y, Jiang L. Signal motifs-dependent ER export of Qc-SNARE BET12 interacts with MEMB12 and affects PR1 trafficking in Arabidopsis. Journal of Cell Science. PMID 28546447 DOI: 10.1242/Jcs.202838  1
2017 Sun MA, Wang Y, Zhang Q, Xia Y, Ge W, Guo D. Prediction of reversible disulfide based on features from local structural signatures. Bmc Genomics. 18: 279. PMID 28376774 DOI: 10.1186/S12864-017-3668-8  1
2016 Wang Y, Wu Y, Yu B, Yin Z, Xia Y. Extra-large G proteins interact with E3 ligases PUB4 and PUB2 and function in cytokinin and developmental processes. Plant Physiology. PMID 27986866 DOI: 10.1104/Pp.16.00816  1
2016 Guan D, Yan B, Thieme C, Hua J, Zhu H, Boheler KR, Zhao Z, Kragler F, Xia Y, Zhang S. PlaMoM: a comprehensive database compiles plant mobile macromolecules. Nucleic Acids Research. PMID 27924044 DOI: 10.1093/Nar/Gkw988  1
2015 Wong YK, Yung KK, Tsang YF, Xia Y, Wang L, Ho KC. Scenedesmus quadricauda for Nutrient Removal and Lipid Production in Wastewater. Water Environment Research : a Research Publication of the Water Environment Federation. 87: 2037-2044. PMID 26652116 DOI: 10.2175/106143015X14362865227193  1
2015 Zhang H, Gu Z, Wu Q, Yang L, Liu C, Ma H, Xia Y, Ge X. Arabidopsis PARG1 is the key factor promoting cell survival among the enzymes regulating post-translational poly(ADP-ribosyl)ation. Scientific Reports. 5: 15892. PMID 26516022 DOI: 10.1038/Srep15892  1
2015 Lin Y, Ding Y, Wang J, Kung CH, Zhuang X, Yin Z, Xia Y, Robinson DG, Shen J, Lin HX, Cui Y, Jiang L. EXPO and Autophagosomes are Distinct Organelles in Plants. Plant Physiology. PMID 26358417 DOI: 10.1104/Pp.15.00953  1
2015 Zhao H, Lü S, Li R, Chen T, Zhang H, Cui P, Ding F, Liu P, Wang G, Xia Y, Running MP, Xiong L. The Arabidopsis gene DIG6 encodes a large 60S subunit nuclear export GTPase 1 that is involved in ribosome biogenesis and affects multiple auxin-regulated development processes. Journal of Experimental Botany. PMID 26272902 DOI: 10.1093/Jxb/Erv391  1
2015 Zhang DP, Zhou Y, Yin JF, Yan XJ, Lin S, Xu WF, Baluška F, Wang YP, Xia YJ, Liang GH, Liang JS. Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation. Journal of Experimental Botany. PMID 26175353 DOI: 10.1093/Jxb/Erv350  1
2015 Ho VW, Wong MK, An X, Guan D, Shao J, Ng HC, Ren X, He K, Liao J, Ang Y, Chen L, Huang X, Yan B, Xia Y, Chan LL, et al. Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry. Molecular Systems Biology. 11: 814. PMID 26063786 DOI: 10.15252/Msb.20145857  1
2015 Shi L, Guo M, Ye N, Liu Y, Liu R, Xia Y, Cui S, Zhang J. Reduced ABA Accumulation in the Root System is Caused by ABA Exudation in Upland Rice (Oryza sativa L. var. Gaoshan1) and this Enhanced Drought Adaptation. Plant & Cell Physiology. 56: 951-64. PMID 25735958 DOI: 10.1093/Pcp/Pcv022  1
2015 Liu P, Zhang H, Yu B, Xiong L, Xia Y. Proteomic identification of early salicylate- and flg22-responsive redox-sensitive proteins in Arabidopsis. Scientific Reports. 5: 8625. PMID 25720653 DOI: 10.1038/Srep08625  1
2015 Zhao P, Liu P, Shao J, Li C, Wang B, Guo X, Yan B, Xia Y, Peng M. Analysis of different strategies adapted by two cassava cultivars in response to drought stress: ensuring survival or continuing growth. Journal of Experimental Botany. 66: 1477-88. PMID 25547914 DOI: 10.1093/Jxb/Eru507  1
2015 Liu R, Liu Y, Ye N, Zhu G, Chen M, Jia L, Xia Y, Shi L, Jia W, Zhang J. AtDsPTP1 acts as a negative regulator in osmotic stress signalling during Arabidopsis seed germination and seedling establishment. Journal of Experimental Botany. 66: 1339-53. PMID 25540435 DOI: 10.1093/Jxb/Eru484  1
2015 Nie L, Wang R, Xia Y, Li G. CDPK1, an Arabidopsis thaliana calcium-dependent protein kinase, is involved in plant defense response Russian Journal of Plant Physiology. 62: 866-874. DOI: 10.1134/S1021443715070018  1
2014 Liu P, Zhang H, Wang H, Xia Y. Identification of redox-sensitive cysteines in the Arabidopsis proteome using OxiTRAQ, a quantitative redox proteomics method. Proteomics. 14: 750-62. PMID 24376095 DOI: 10.1002/Pmic.201300307  1
2014 Hu Q, Guo G, Yang Z, Li Y, Xia Y, Li N. Stable isotope metabolic labeling-based quantitative thiol redox proteomic analysis of hydrogen peroxide-treated arabidopsis plant Journal of Proteomics & Bioinformatics. 7: 121. DOI: 10.4172/Jpb.1000312  1
2013 Li C, Shao J, Wang Y, Li W, Guo D, Yan B, Xia Y, Peng M. Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by race 1 and tropical race 4 of Fusarium oxysporum f. sp. cubense. Bmc Genomics. 14: 851. PMID 24304681 DOI: 10.1186/1471-2164-14-851  1
2013 Li G, Zhang X, Wan D, Zhang S, Xia Y. Methods for analysis of disease resistance and the defense response in Arabidopsis. Methods in Molecular Biology (Clifton, N.J.). 1043: 55-66. PMID 23913035 DOI: 10.1007/978-1-62703-532-3_6  1
2013 Zhi H, Tang L, Xia Y, Zhang J. Ssk1p-independent activation of Ssk2p plays an important role in the osmotic stress response in Saccharomyces cerevisiae: alternative activation of Ssk2p in osmotic stress. Plos One. 8: e54867. PMID 23457455 DOI: 10.1371/Journal.Pone.0054867  1
2013 Wang H, Lu Y, Jiang T, Berg H, Li C, Xia Y. The Arabidopsis U-box/ARM repeat E3 ligase AtPUB4 influences growth and degeneration of tapetal cells, and its mutation leads to conditional male sterility. The Plant Journal : For Cell and Molecular Biology. 74: 511-23. PMID 23398263 DOI: 10.1111/Tpj.12146  1
2013 Zhang X, Li M, Ruan M, Xia Y, Wu K, Peng M. Isolation of AtNUDT5 Gene Promoter and Characterization of Its Activity in Transgenic Arabidopsis thaliana Applied Biochemistry and Biotechnology. 169: 1557-1565. PMID 23322251 DOI: 10.1007/S12010-012-0071-4  1
2013 Wang H, Lu Y, Liu P, Wen W, Zhang J, Ge X, Xia Y. The ammonium/nitrate ratio is an input signal in the temperature-modulated, SNC1-mediated and EDS1-dependent autoimmunity of nudt6-2 nudt7. The Plant Journal : For Cell and Molecular Biology. 73: 262-75. PMID 23004358 DOI: 10.1111/Tpj.12032  1
2012 Jia L, Wu Q, Ye N, Liu R, Shi L, Xu W, Zhi H, Rahman AN, Xia Y, Zhang J. Proanthocyanidins inhibit seed germination by maintaining a high level of abscisic acid in Arabidopsis thaliana. Journal of Integrative Plant Biology. 54: 663-73. PMID 22765383 DOI: 10.1111/J.1744-7909.2012.01142.X  1
2012 Wang H, Wang S, Xia Y. Identification and verification of redox-sensitive proteins in Arabidopsis thaliana. Methods in Molecular Biology (Clifton, N.J.). 876: 83-94. PMID 22576087 DOI: 10.1007/978-1-61779-809-2_6  1
2012 Wan D, Li R, Zou B, Zhang X, Cong J, Wang R, Xia Y, Li G. Calmodulin-binding protein CBP60g is a positive regulator of both disease resistance and drought tolerance in Arabidopsis. Plant Cell Reports. 31: 1269-81. PMID 22466450 DOI: 10.1007/S00299-012-1247-7  1
2012 Jia L, Sheng Z, Xu W, Li Y, Liu Y, Xia Y, Zhang J. Modulation of anti-oxidation ability by proanthocyanidins during germination of Arabidopsis thaliana seeds. Molecular Plant. 5: 472-481. PMID 22115918 DOI: 10.1093/Mp/Ssr089  1
2012 Wang H, Wang S, Lu Y, Alvarez S, Hicks LM, Ge X, Xia Y. Proteomic analysis of early-responsive redox-sensitive proteins in Arabidopsis. Journal of Proteome Research. 11: 412-24. PMID 22050424 DOI: 10.1021/Pr200918F  1
2012 Wen W, Cui B, Yu X, Chen Q, Zheng Y, Xia Y, Peng M. Functional Analysis of Cotton DELLA-Like Genes that are Differentially Regulated during Fiber Development Plant Molecular Biology Reporter. 30: 1014-1024. DOI: 10.1007/S11105-012-0412-Z  1
2011 Lu Y, Li C, Wang H, Chen H, Berg H, Xia Y. AtPPR2, an Arabidopsis pentatricopeptide repeat protein, binds to plastid 23S rRNA and plays an important role in the first mitotic division during gametogenesis and in cell proliferation during embryogenesis. The Plant Journal : For Cell and Molecular Biology. 67: 13-25. PMID 21435048 DOI: 10.1111/J.1365-313X.2011.04569.X  1
2010 Xie Y-, Li W, Guo D, Dong J, Zhang Q, Fu Y, Ren D, Peng M, Xia Y. The Arabidopsis gene SIGMA FACTOR-BINDING PROTEIN 1 plays a role in the salicylate- and jasmonate-mediated defence responses. Plant Cell and Environment. 33: 828-839. PMID 20040062 DOI: 10.1111/J.1365-3040.2009.02109.X  1
2009 Zhu H, Li GJ, Ding L, Cui X, Berg H, Assmann SM, Xia Y. Arabidopsis extra large G-protein 2 (XLG2) interacts with the Gbeta subunit of heterotrimeric G protein and functions in disease resistance. Molecular Plant. 2: 513-25. PMID 19825634 DOI: 10.1093/Mp/Ssp001  1
2008 Ge X, Xia Y. The role of AtNUDT7, a Nudix hydrolase, in the plant defense response. Plant Signaling & Behavior. 3: 119-20. PMID 19704728 DOI: 10.4161/Psb.3.2.5019  1
2007 Ge X, Li GJ, Wang SB, Zhu H, Zhu T, Wang X, Xia Y. AtNUDT7, a negative regulator of basal immunity in Arabidopsis, modulates two distinct defense response pathways and is involved in maintaining redox homeostasis. Plant Physiology. 145: 204-15. PMID 17660350 DOI: 10.1104/Pp.107.103374  1
2006 Yandeau-Nelson MD, Xia Y, Li J, Neuffer MG, Schnable PS. Unequal sister chromatid and homolog recombination at a tandem duplication of the A1 locus in maize. Genetics. 173: 2211-26. PMID 16751673 DOI: 10.1534/Genetics.105.052712  1
2005 Ge X, Dietrich C, Matsuno M, Li G, Berg H, Xia Y. An Arabidopsis aspartic protease functions as an anti-cell-death component in reproduction and embryogenesis. Embo Reports. 6: 282-8. PMID 15723040 DOI: 10.1038/Sj.Embor.7400357  1
2004 Xia Y. Proteases in pathogenesis and plant defence Cellular Microbiology. 6: 905-913. PMID 15339266 DOI: 10.1111/J.1462-5822.2004.00438.X  1
2004 Xia Y, Suzuki H, Borevitz J, Blount J, Guo Z, Patel K, Dixon RA, Lamb C. An extracellular aspartic protease functions in Arabidopsis disease resistance signaling Embo Journal. 23: 980-988. PMID 14765119 DOI: 10.1038/Sj.Emboj.7600086  1
2004 Suzuki H, Xia Y, Cameron R, Shadle G, Blount J, Lamb C, Dixon RA. Signals for local and systemic responses of plants to pathogen attack. Journal of Experimental Botany. 55: 169-79. PMID 14673031 DOI: 10.1093/Jxb/Erh025  1
2002 Xia Y, Borevitz J, Blount JW, Dixon RA, Lamb C. Chapter Seven Biopanning by activation tagging Recent Advances in Phytochemistry. 36: 111-123. DOI: 10.1016/S0079-9920(02)80023-5  1
2000 Borevitz JO, Xia Y, Blount J, Dixon RA, Lamb C. Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. The Plant Cell. 12: 2383-2394. PMID 11148285 DOI: 10.1105/Tpc.12.12.2383  1
2000 Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrándiz C, Kardailsky I, Malancharuvil EJ, Neff MM, Nguyen JT, Sato S, Wang ZY, Xia Y, Dixon RA, et al. Activation tagging in Arabidopsis. Plant Physiology. 122: 1003-13. PMID 10759496 DOI: 10.1104/Pp.122.4.1003  1
1998 Delledonne M, Xia Y, Dixon RA, Lamb C. Nitric oxide functions as a signal in plant disease resistance. Nature. 394: 585-8. PMID 9707120 DOI: 10.1038/29087  0.32
1997 Xia Y, Nikolau BJ, Schnable PS. Developmental and hormonal regulation of the Arabidopsis CER2 gene that codes for a nuclear-localized protein required for the normal accumulation of cuticular waxes Plant Physiology. 115: 925-937. PMID 9390429 DOI: 10.1104/Pp.115.3.925  1
1997 Xu X, Dietrich CR, Delledonne M, Xia Y, Wen TJ, Robertson DS, Nikolau BJ, Schnable PS. Sequence analysis of the cloned glossy8 gene of maize suggests that it may code for a beta-ketoacyl reductase required for the biosynthesis of cuticular waxes. Plant Physiology. 115: 501-10. PMID 9342868 DOI: 10.1104/Pp.115.2.501  1
1997 Hansen JD, Pyee J, Xia Y, Wen TJ, Robertson DS, Kolattukudy PE, Nikolau BJ, Schnable PS. The glossy1 locus of maize and an epidermis-specific cDNA from Kleinia odora define a class of receptor-like proteins required for the normal accumulation of cuticular waxes Plant Physiology. 113: 1091-1100. PMID 9112770 DOI: 10.1104/Pp.113.4.1091  1
1996 Xia Y, Nikolau BJ, Schnable PS. Cloning and characterization of CER2, an Arabidopsis gene that affects cuticular wax accumulation Plant Cell. 8: 1291-1304. PMID 8776898 DOI: 10.1105/Tpc.8.8.1291  1
1994 Civardi L, Xia Y, Edwards KJ, Schnable PS, Nikolau BJ. The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome Proceedings of the National Academy of Sciences of the United States of America. 91: 8268-8272. PMID 8058793 DOI: 10.1073/Pnas.91.17.8268  1
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