Matthew J Phillips - Publications

Queensland University of Technology, Brisbane City, Queensland, Australia 

62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Weisbecker V, Beck RMD, Guillerme T, Harrington AR, Lange-Hodgson L, Lee MSY, Mardon K, Phillips MJ. Multiple modes of inference reveal less phylogenetic signal in marsupial basicranial shape compared with the rest of the cranium. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 378: 20220085. PMID 37183893 DOI: 10.1098/rstb.2022.0085  0.311
2023 Grealy A, Miller GH, Phillips MJ, Clarke SJ, Fogel M, Patalwala D, Rigby P, Hubbard A, Demarchi B, Collins M, Mackie M, Sakalauskaite J, Stiller J, Clarke JA, Legendre LJ, et al. Molecular exploration of fossil eggshell uncovers hidden lineage of giant extinct bird. Nature Communications. 14: 914. PMID 36854679 DOI: 10.1038/s41467-023-36405-3  0.3
2020 Marcy AE, Guillerme T, Sherratt E, Rowe KC, Phillips MJ, Weisbecker V. Australian Rodents Reveal Conserved Cranial Evolutionary Allometry across 10 Million Years of Murid Evolution. The American Naturalist. 196: 755-768. PMID 33211559 DOI: 10.1086/711398  0.368
2020 Celik MA, Phillips MJ. Conflict Resolution for Mesozoic Mammals: Reconciling Phylogenetic Incongruence Among Anatomical Regions. Frontiers in Genetics. 11: 0651. PMID 32774343 DOI: 10.3389/Fgene.2020.00651  0.433
2019 Celik M, Cascini M, Haouchar D, Van Der Burg C, Dodt W, Evans AR, Prentis P, Bunce M, Fruciano C, Phillips MJ. A molecular and morphometric assessment of the systematics of the Macropus complex clarifies the tempo and mode of kangaroo evolution Zoological Journal of the Linnean Society. 186: 793-812. DOI: 10.1093/Zoolinnean/Zlz005  0.719
2019 Mutton TY, Phillips MJ, Fuller SJ, Bryant LM, Baker AM. Systematics, biogeography and ancestral state of the Australian marsupial genus Antechinus (Dasyuromorphia: Dasyuridae) Zoological Journal of the Linnean Society. 186: 553-568. DOI: 10.1093/Zoolinnean/Zly062  0.411
2018 Cascini M, Mitchell KJ, Cooper A, Phillips MJ. Reconstructing the Evolution of Giant Extinct Kangaroos: Comparing the Utility of DNA, Morphology, and Total Evidence. Systematic Biology. PMID 30481358 DOI: 10.1093/Sysbio/Syy080  0.426
2018 Phillips MJ, Fruciano C. The soft explosive model of placental mammal evolution. Bmc Evolutionary Biology. 18: 104. PMID 29969980 DOI: 10.1186/S12862-018-1218-X  0.691
2018 Marcy AE, Fruciano C, Phillips MJ, Mardon K, Weisbecker V. Low resolution scans can provide a sufficiently accurate, cost- and time-effective alternative to high resolution scans for 3D shape analyses. Peerj. 6: e5032. PMID 29942695 DOI: 10.7717/Peerj.5032  0.647
2018 Travouillon KJ, Phillips MJ. Total evidence analysis of the phylogenetic relationships of bandicoots and bilbies (Marsupialia: Peramelemorphia): reassessment of two species and description of a new species. Zootaxa. 4378: 224-256. PMID 29690027 DOI: 10.11646/Zootaxa.4378.2.3  0.41
2017 Dodt WG, Gallus S, Phillips MJ, Nilsson MA. Resolving kangaroo phylogeny and overcoming retrotransposon ascertainment bias. Scientific Reports. 7: 16811. PMID 29196678 DOI: 10.1038/S41598-017-16148-0  0.424
2017 Nilsson MA, Zheng Y, Kumar V, Phillips MJ, Janke A. Speciation generates mosaic genomes in kangaroos. Genome Biology and Evolution. PMID 29182740 DOI: 10.1093/Gbe/Evx245  0.475
2017 Fruciano C, Celik MA, Butler K, Dooley T, Weisbecker V, Phillips MJ. Sharing is caring? Measurement error and the issues arising from combining 3D morphometric datasets. Ecology and Evolution. 7: 7034-7046. PMID 28904781 DOI: 10.1002/Ece3.3256  0.664
2017 Grealy A, Phillips M, Miller G, Gilbert MT, Rouillard JM, Lambert D, Bunce M, Haile J. Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell. Molecular Phylogenetics and Evolution. 109: 151-163. PMID 28089793 DOI: 10.1016/J.Ympev.2017.01.005  0.461
2016 Ramírez-Chaves HE, Weisbecker V, Wroe S, Phillips MJ. Resolving the evolution of the mammalian middle ear using Bayesian inference. Frontiers in Zoology. 13: 39. PMID 27563341 DOI: 10.1186/S12983-016-0171-Z  0.334
2016 Ronquist F, Lartillot N, Phillips MJ. Closing the gap between rocks and clocks using total-evidence dating. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27325833 DOI: 10.1098/Rstb.2015.0136  0.422
2016 Lartillot N, Phillips MJ, Ronquist F. A mixed relaxed clock model. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 371. PMID 27325829 DOI: 10.1098/Rstb.2015.0132  0.345
2016 Haouchar D, Pacioni C, Haile J, McDowell MC, Baynes A, Phillips MJ, Austin JJ, Pope LC, Bunce M. Ancient DNA reveals complexity in the evolutionary history and taxonomy of the endangered Australian brush-tailed bettongs (Bettongia: Marsupialia: Macropodidae: Potoroinae) Biodiversity and Conservation. 1-21. DOI: 10.1007/S10531-016-1210-Y  0.387
2015 Phillips MJ. Geomolecular Dating and the Origin of Placental Mammals. Systematic Biology. PMID 26658702 DOI: 10.1093/Sysbio/Syv115  0.373
2015 Mitchell KJ, Cooper A, Phillips MJ. Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, N.Y.). 349: 1460. PMID 26404819 DOI: 10.1126/Science.Aab1062  0.381
2015 Ksepka DT, Parham JF, Allman JF, Benton MJ, Carrano MT, Cranston KA, Donoghue PC, Head JJ, Hermsen EJ, Irmis RB, Joyce WG, Kohli M, Lamm KD, Leehr D, Patané JL, ... ... Phillips MJ, et al. The Fossil Calibration Database-A New Resource for Divergence Dating. Systematic Biology. PMID 25922515 DOI: 10.1093/Sysbio/Syv025  0.36
2015 Ksepka DT, Phillips MJ. Avian Diversification Patterns across the K-Pg Boundary: Influence of Calibrations, Datasets, and Model Misspecification Annals of the Missouri Botanical Garden. 100: 300-328. DOI: 10.3417/2014032  0.456
2015 Phillips MJ. Four mammal fossil calibrations: balancing competing palaeontological and molecular considerations Palaeontologia Electronica. 18: 1-16. DOI: 10.26879/490  0.362
2014 Dodt WG, McComish BJ, Nilsson MA, Gibb GC, Penny D, Phillips MJ. The complete mitochondrial genome of the eastern grey kangaroo (Macropus giganteus). Mitochondrial Dna. 1-2. PMID 25103427 DOI: 10.3109/19401736.2014.947583  0.594
2014 Mitchell KJ, Pratt RC, Watson LN, Gibb GC, Llamas B, Kasper M, Edson J, Hopwood B, Male D, Armstrong KN, Meyer M, Hofreiter M, Austin J, Donnellan SC, Lee MS, ... Phillips MJ, et al. Molecular phylogeny, biogeography, and habitat preference evolution of marsupials. Molecular Biology and Evolution. 31: 2322-30. PMID 24881050 DOI: 10.1093/Molbev/Msu176  0.454
2014 Haouchar D, Haile J, McDowell MC, Murray DC, White NE, Allcock RJN, Phillips MJ, Prideaux GJ, Bunce M. Thorough assessment of DNA preservation from fossil bone and sediments excavated from a late Pleistocene-Holocene cave deposit on Kangaroo Island, South Australia Quaternary Science Reviews. 84: 56-64. DOI: 10.1016/J.Quascirev.2013.11.007  0.311
2013 Phillips MJ, Page TJ, de Bruyn M, Huey JA, Humphreys WF, Hughes JM, Santos SR, Schmidt DJ, Waters JM. The linking of plate tectonics and evolutionary divergence. Current Biology : Cb. 23: R603-5. PMID 23885872 DOI: 10.1016/J.Cub.2013.06.001  0.396
2013 Phillips MJ, Haouchar D, Pratt RC, Gibb GC, Bunce M. Inferring kangaroo phylogeny from incongruent nuclear and mitochondrial genes. Plos One. 8: e57745. PMID 23451266 DOI: 10.1371/Journal.Pone.0057745  0.422
2013 De Bruyn M, Stelbrink B, Page TJ, Phillips MJ, Lohman DJ, Albrecht C, Hall R, von Rintelen K, Ng PKL, Shih HT, Carvalho GR, von Rintelen T. Time and space in biogeography: Response to Parenti & Ebach (2013) Journal of Biogeography. 40: 2204-2206. DOI: 10.1111/Jbi.12166  0.334
2011 Ho SYW, Lanfear R, Bromham L, Phillips MJ, Soubrier J, Rodrigo AG, Cooper A. Time-dependent rates of molecular evolution Molecular Ecology. 20: 3087-3101. PMID 21740474 DOI: 10.1111/J.1365-294X.2011.05178.X  0.331
2011 Ksepka DT, Benton MJ, Carrano MT, Gandolfo MA, Head JJ, Hermsen EJ, Joyce WG, Lamm KS, Patané JS, Phillips MJ, Polly PD, Van Tuinen M, Ware JL, Warnock RC, Parham JF. Synthesizing and databasing fossil calibrations: divergence dating and beyond. Biology Letters. 7: 801-3. PMID 21525049 DOI: 10.1098/Rsbl.2011.0356  0.379
2011 White NE, Phillips MJ, Gilbert MT, Alfaro-Núñez A, Willerslev E, Mawson PR, Spencer PB, Bunce M. The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae). Molecular Phylogenetics and Evolution. 59: 615-22. PMID 21419232 DOI: 10.1016/J.Ympev.2011.03.011  0.454
2011 Ho SY, Lanfear R, Phillips MJ, Barnes I, Thomas JA, Kolokotronis SO, Shapiro B. Bayesian estimation of substitution rates from ancient DNA sequences with low information content. Systematic Biology. 60: 366-75. PMID 21296909 DOI: 10.1093/Sysbio/Syq099  0.301
2010 Robins JH, McLenachan PA, Phillips MJ, McComish BJ, Matisoo-Smith E, Ross HA. Evolutionary relationships and divergence times among the native rats of Australia. Bmc Evolutionary Biology. 10: 375. PMID 21126350 DOI: 10.1186/1471-2148-10-375  0.401
2010 Phillips MJ, Gibb GC, Crimp EA, Penny D. Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites. Systematic Biology. 59: 90-107. PMID 20525622 DOI: 10.1093/Sysbio/Syp079  0.641
2010 Phillips MJ, Bennett TH, Lee MSY. Reply to Camens: How recently did modern monotremes diversify? Proceedings of the National Academy of Sciences of the United States of America. 107: e13. DOI: 10.1073/Pnas.0913152107  0.387
2009 Ho SY, Phillips MJ. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Systematic Biology. 58: 367-80. PMID 20525591 DOI: 10.1093/Sysbio/Syp035  0.416
2009 Bunce M, Worthy TH, Phillips MJ, Holdaway RN, Willerslev E, Haile J, Shapiro B, Scofield RP, Drummond A, Kamp PJ, Cooper A. The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography. Proceedings of the National Academy of Sciences of the United States of America. 106: 20646-51. PMID 19923428 DOI: 10.1073/Pnas.0906660106  0.437
2009 Phillips MJ, Bennett TH, Lee MS. Molecules, morphology, and ecology indicate a recent, amphibious ancestry for echidnas. Proceedings of the National Academy of Sciences of the United States of America. 106: 17089-94. PMID 19805098 DOI: 10.1073/Pnas.0904649106  0.412
2009 Pratt RC, Gibb GC, Morgan-Richards M, Phillips MJ, Hendy MD, Penny D. Toward resolving deep neoaves phylogeny: data, signal enhancement, and priors. Molecular Biology and Evolution. 26: 313-26. PMID 18981298 DOI: 10.1093/Molbev/Msn248  0.613
2009 Phillips MJ. Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny. Gene. 441: 132-40. PMID 18809474 DOI: 10.1016/J.Gene.2008.08.017  0.433
2008 Robins JH, McLenachan PA, Phillips MJ, Craig L, Ross HA, Matisoo-Smith E. Dating of divergences within the Rattus genus phylogeny using whole mitochondrial genomes. Molecular Phylogenetics and Evolution. 49: 460-6. PMID 18725306 DOI: 10.1016/J.Ympev.2008.08.001  0.372
2008 Gibbs AJ, Ohshima K, Phillips MJ, Gibbs MJ. The prehistory of potyviruses: their initial radiation was during the dawn of agriculture. Plos One. 3: e2523. PMID 18575612 DOI: 10.1371/Journal.Pone.0002523  0.316
2008 Morgan-Richards M, Trewick SA, Bartosch-Härlid A, Kardailsky O, Phillips MJ, McLenachan PA, Penny D. Bird evolution: testing the Metaves clade with six new mitochondrial genomes. Bmc Evolutionary Biology. 8: 20. PMID 18215323 DOI: 10.1186/1471-2148-8-20  0.643
2008 Penny D, White WT, Hendy MD, Phillips MJ. A bias in ML estimates of branch lengths in the presence of multiple signals. Molecular Biology and Evolution. 25: 239-42. PMID 18048399 DOI: 10.1093/Molbev/Msm263  0.546
2008 Phillips MJ, Pratt RC. Family-level relationships among the Australasian marsupial "herbivores" (Diprotodontia: Koala, wombats, kangaroos and possums). Molecular Phylogenetics and Evolution. 46: 594-605. PMID 17959392 DOI: 10.1016/J.Ympev.2007.09.008  0.37
2007 Penny D, Phillips MJ. Evolutionary biology: mass survivals. Nature. 446: 501-2. PMID 17392773 DOI: 10.1038/446501A  0.547
2006 Drummond AJ, Ho SY, Phillips MJ, Rambaut A. Relaxed phylogenetics and dating with confidence. Plos Biology. 4: e88. PMID 16683862 DOI: 10.1371/Journal.Pbio.0040088  0.418
2006 Phillips MJ, McLenachan PA, Down C, Gibb GC, Penny D. Combined mitochondrial and nuclear DNA sequences resolve the interrelations of the major Australasian marsupial radiations. Systematic Biology. 55: 122-37. PMID 16507529 DOI: 10.1080/10635150500481614  0.633
2005 Barnett R, Barnes I, Phillips MJ, Martin LD, Harington CR, Leonard JA, Cooper A. Evolution of the extinct Sabretooths and the American cheetah-like cat. Current Biology : Cb. 15: R589-90. PMID 16085477 DOI: 10.1016/J.Cub.2005.07.052  0.377
2005 Ho SY, Phillips MJ, Cooper A, Drummond AJ. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Biology and Evolution. 22: 1561-8. PMID 15814826 DOI: 10.1093/Molbev/Msi145  0.399
2005 Ho SY, Phillips MJ, Drummond AJ, Cooper A. Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation. Molecular Biology and Evolution. 22: 1355-63. PMID 15758207 DOI: 10.1093/Molbev/Msi125  0.351
2004 Penny D, Phillips MJ. The rise of birds and mammals: are microevolutionary processes sufficient for macroevolution? Trends in Ecology & Evolution. 19: 516-22. PMID 16701316 DOI: 10.1016/J.Tree.2004.07.015  0.556
2004 Phillips MJ, Delsuc F, Penny D. Genome-scale phylogeny and the detection of systematic biases. Molecular Biology and Evolution. 21: 1455-8. PMID 15084674 DOI: 10.1093/Molbev/Msh137  0.596
2004 Harrison GL, McLenachan PA, Phillips MJ, Slack KE, Cooper A, Penny D. Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous. Molecular Biology and Evolution. 21: 974-83. PMID 14739240 DOI: 10.1093/Molbev/Msh065  0.634
2003 Delsuc F, Phillips MJ, Penny D. Comment on "Hexapod origins: monophyletic or paraphyletic?". Science (New York, N.Y.). 301: 1482; author reply 1. PMID 12970547 DOI: 10.1126/Science.1086558  0.521
2003 Phillips MJ, Penny D. The root of the mammalian tree inferred from whole mitochondrial genomes. Molecular Phylogenetics and Evolution. 28: 171-85. PMID 12878457 DOI: 10.1016/S1055-7903(03)00057-5  0.624
2003 Poole AM, Phillips MJ, Penny D. Prokaryote and eukaryote evolvability. Bio Systems. 69: 163-85. PMID 12689728 DOI: 10.1016/S0303-2647(02)00131-4  0.571
2002 Lin YH, McLenachan PA, Gore AR, Phillips MJ, Ota R, Hendy MD, Penny D. Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling. Molecular Biology and Evolution. 19: 2060-70. PMID 12446798 DOI: 10.1093/Oxfordjournals.Molbev.A004031  0.63
2001 Phillips MJ, Lin Y, Harrison G, Penny D. Mitochondrial genomes of a bandicoot and a brushtail possum confirm the monophyly of australidelphian marsupials. Proceedings of the Royal Society B: Biological Sciences. 268: 1533-1538. PMID 11454299 DOI: 10.1098/Rspb.2001.1677  0.61
1999 Bromham L, Penny D, Phillips M. Reply from L. Bromham, D. Penny and M.J. Phillips. Trends in Ecology & Evolution. 14: 278. PMID 10370264 DOI: 10.1016/S0169-5347(99)01651-1  0.468
1999 Bromham L, Phillips MJ, Penny D. Growing up with dinosaurs: molecular dates and the mammalian radiation. Trends in Ecology & Evolution. 14: 113-118. PMID 10322512 DOI: 10.1016/S0169-5347(98)01507-9  0.567
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