| Year |
Citation |
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| 2021 |
Burrichter AG, Dörr S, Bergmann P, Haiß S, Keller A, Fournier C, Franchini P, Isono E, Schleheck D. Bacterial microcompartments for isethionate desulfonation in the taurine-degrading human-gut bacterium Bilophila wadsworthia. Bmc Microbiology. 21: 340. PMID 34903181 DOI: 10.1186/s12866-021-02386-w |
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| 2021 |
Mao Z, Gräßle F, Frey J, Franchini P, Schleheck D, Müller N, Schink B. gen. nov. sp. nov., a new dissimilatory phosphite-oxidizing anaerobic bacterium isolated from anaerobic sewage sludge. International Journal of Systematic and Evolutionary Microbiology. 71. PMID 34878375 DOI: 10.1099/ijsem.0.005142 |
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| 2021 |
Levin B, Simonov E, Franchini P, Mugue N, Golubtsov A, Meyer A. Rapid adaptive radiation in a hillstream cyprinid fish in the East African White Nile River basin. Molecular Ecology. PMID 34409661 DOI: 10.1111/mec.16130 |
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| 2021 |
Gräßle F, Plugge C, Franchini P, Schink B, Schleheck D, Müller N. Pelorhabdus rhamnosifermentans gen. nov., sp. nov., a strictly anaerobic rhamnose degrader from freshwater lake sediment. Systematic and Applied Microbiology. 44: 126225. PMID 34198168 DOI: 10.1016/j.syapm.2021.126225 |
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| 2021 |
Fruciano C, Franchini P, Jones JC. Capturing the rapidly evolving study of adaptation. Journal of Evolutionary Biology. 34: 856-865. PMID 34145685 DOI: 10.1111/jeb.13871 |
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| 2021 |
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, ... ... Franchini P, et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 592: 737-746. PMID 33911273 DOI: 10.1038/s41586-021-03451-0 |
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| 2021 |
Meyer A, Schloissnig S, Franchini P, Du K, Woltering J, Irisarri I, Wong WY, Nowoshilow S, Kneitz S, Kawaguchi A, Fabrizius A, Xiong P, Dechaud C, Spaink H, Volff JN, et al. Giant lungfish genome elucidates the conquest of land by vertebrates. Nature. PMID 33461212 DOI: 10.1038/s41586-021-03198-8 |
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| 2020 |
Xiong P, Hulsey CD, Fruciano C, Wong WY, Nater A, Kautt AF, Simakov O, Pippel M, Kuraku S, Meyer A, Franchini P. The Comparative Genomic Landscape of Adaptive Radiation in Crater Lake Cichlid Fishes. Molecular Ecology. PMID 33305470 DOI: 10.1111/mec.15774 |
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| 2020 |
Fruciano C, Colangelo P, Castiglia R, Franchini P. Does divergence from normal patterns of integration increase as chromosomal fusions increase in number? A test on a house mouse hybrid zone. Current Zoology. 66: 527-538. PMID 33293931 DOI: 10.1093/Cz/Zoaa035 |
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| 2020 |
Kautt AF, Kratochwil CF, Nater A, Machado-Schiaffino G, Olave M, Henning F, Torres-Dowdall J, Härer A, Hulsey CD, Franchini P, Pippel M, Myers EW, Meyer A. Contrasting signatures of genomic divergence during sympatric speciation. Nature. PMID 33116308 DOI: 10.1038/s41586-020-2845-0 |
1 |
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| 2020 |
M Real F, Haas SA, Franchini P, Xiong P, Simakov O, Kuhl H, Schöpflin R, Heller D, Moeinzadeh MH, Heinrich V, Krannich T, Bressin A, Hartmann MF, Wudy SA, Dechmann DKN, et al. The mole genome reveals regulatory rearrangements associated with adaptive intersexuality. Science (New York, N.Y.). 370: 208-214. PMID 33033216 DOI: 10.1126/science.aaz2582 |
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| 2020 |
Frommeyer B, Fiedler AW, Oehler SR, Hanson BT, Loy A, Franchini P, Spiteller D, Schleheck D. Environmental and Intestinal Phylum Firmicutes Bacteria Metabolize the Plant Sugar Sulfoquinovose via a 6-Deoxy-6-sulfofructose Transaldolase Pathway. Iscience. 23: 101510. PMID 32919372 DOI: 10.1016/J.Isci.2020.101510 |
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| 2020 |
Franchini P, Kautt AF, Nater A, Antonini G, Castiglia R, Meyer A, Solano E. Reconstructing the evolutionary history of chromosomal races on islands: a genome-wide analysis of natural house mouse populations. Molecular Biology and Evolution. PMID 32449753 DOI: 10.1093/Molbev/Msaa118 |
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| 2019 |
Raffini F, Schneider RF, Franchini P, Kautt AF, Meyer A. Diving into divergence: Differentiation in swimming performances, physiology and gene expression between locally-adapted sympatric cichlid fishes. Molecular Ecology. PMID 31710745 DOI: 10.1111/Mec.15304 |
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| 2019 |
Xiong P, Schneider RF, Hulsey CD, Meyer A, Franchini P. Conservation and novelty in the microRNA genomic landscape of hyperdiverse cichlid fishes. Scientific Reports. 9: 13848. PMID 31554838 DOI: 10.1038/S41598-019-50124-0 |
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| 2019 |
Franchini P, Xiong P, Fruciano C, Schneider RF, Woltering JM, Hulsey CD, Meyer A. MicroRNA gene regulation in extremely young and parallel adaptive radiations of crater lake cichlid fish. Molecular Biology and Evolution. PMID 31397871 DOI: 10.1093/Molbev/Msz168 |
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| 2019 |
Fruciano C, Meyer A, Franchini P. Divergent allometric trajectories in gene expression and co-expression produce species differences in sympatrically speciating Midas cichlid fish. Genome Biology and Evolution. PMID 31124568 DOI: 10.1093/Gbe/Evz108 |
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| 2019 |
Levin B, Simonov E, Franchini P, Meyer A, Golubtsov A. Sympatric assemblage of cyprinid fishes of the genus Garra (Cyprinidae) from the Sore River, White Nile basin, East Africa: is it a species flock? Frontiers in Marine Science. 6. DOI: 10.3389/Conf.Fmars.2019.07.00059 |
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| 2018 |
Burrichter A, Denger K, Franchini P, Huhn T, Müller N, Spiteller D, Schleheck D. Anaerobic Degradation of the Plant Sugar Sulfoquinovose Concomitant With HS Production: K-12 and sp. Strain DF1 as Co-culture Model. Frontiers in Microbiology. 9: 2792. PMID 30546350 DOI: 10.3389/Fmicb.2018.02792 |
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| 2018 |
Franchini P, Jones JC, Xiong P, Kneitz S, Gompert Z, Warren WC, Walter RB, Meyer A, Schartl M. Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish. Nature Communications. 9: 5136. PMID 30510159 DOI: 10.1038/S41467-018-07648-2 |
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| 2018 |
Irisarri I, Singh P, Koblmüller S, Torres-Dowdall J, Henning F, Franchini P, Fischer C, Lemmon AR, Lemmon EM, Thallinger GG, Sturmbauer C, Meyer A. Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes. Nature Communications. 9: 3159. PMID 30089797 DOI: 10.1038/S41467-018-05479-9 |
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| 2018 |
Xiong P, Hulsey CD, Meyer A, Franchini P. Evolutionary divergence of 3' UTRs in cichlid fishes. Bmc Genomics. 19: 433. PMID 29866078 DOI: 10.1186/S12864-018-4821-8 |
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| 2017 |
Lee HJ, Schneider RF, Manousaki T, Kang JH, Lein E, Franchini P, Meyer A. Lateralized Feeding Behavior Comes with Asymmetrical Neuroanatomy and Lateralized Gene Expressions in the Brain in Scale-Eating Cichlid Fish. Genome Biology and Evolution. PMID 29069363 DOI: 10.1093/Gbe/Evx218 |
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| 2017 |
Franchini P, Irisarri I, Fudickar A, Schmidt A, Meyer A, Wikelski M, Partecke J. Animal tracking meets migration genomics: transcriptomic analysis of a partially migratory bird species. Molecular Ecology. PMID 28316119 DOI: 10.1111/Mec.14108 |
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| 2017 |
Franchini P, Monné Parera D, Kautt AF, Meyer A. quaddRAD: A new high-multiplexing and PCR duplicate removal ddRAD protocol produces novel evolutionary insights in a non-radiating cichlid lineage. Molecular Ecology. PMID 28247584 DOI: 10.1111/Mec.14077 |
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| 2016 |
Fruciano C, Franchini P, Kovacova V, Elmer KR, Henning F, Meyer A. Genetic linkage of distinct adaptive traits in sympatrically speciating crater lake cichlid fish. Nature Communications. 7: 12736. PMID 27597183 DOI: 10.1038/Ncomms12736 |
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| 2016 |
Fruciano C, Franchini P, Raffini F, Fan S, Meyer A. Are sympatrically speciating Midas cichlid fish special? Patterns of morphological and genetic variation in the closely related species Archocentrus centrarchus. Ecology and Evolution. 6: 4102-14. PMID 27516867 DOI: 10.1002/Ece3.2184 |
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| 2016 |
Franchini P, Xiong P, Fruciano C, Meyer A. The role of microRNAs in the repeated parallel diversification of lineages of Midas cichlid fish from Nicaragua. Genome Biology and Evolution. PMID 27189980 DOI: 10.1093/Gbe/Evw097 |
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| 2016 |
Raffini F, Fruciano C, Franchini P, Meyer A. Towards understanding the genetic basis of mouth asymmetry in the scale-eating cichlid Perissodus microlepis. Molecular Ecology. PMID 27178345 DOI: 10.1111/Mec.13699 |
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| 2016 |
Franchini P, Colangelo P, Meyer A, Fruciano C. Chromosomal rearrangements, phenotypic variation and modularity: a case study from a contact zone between house mouse Robertsonian races in Central Italy. Ecology and Evolution. PMID 26855768 DOI: 10.1002/Ece3.1912 |
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| 2015 |
Felux AK, Franchini P, Schleheck D. Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1. Standards in Genomic Sciences. 10: 42. PMID 27408681 DOI: 10.1186/S40793-015-0033-X |
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| 2015 |
Kavembe GD, Franchini P, Irisarri I, Machado-Schiaffino G, Meyer A. Genomics of Adaptation to Multiple Concurrent Stresses: Insights from Comparative Transcriptomics of a Cichlid Fish from One of Earth's Most Extreme Environments, the Hypersaline Soda Lake Magadi in Kenya, East Africa. Journal of Molecular Evolution. 81: 90-109. PMID 26345661 DOI: 10.1007/S00239-015-9696-6 |
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| 2015 |
Modica MV, Lombardo F, Franchini P, Oliverio M. The venomous cocktail of the vampire snail Colubraria reticulata (Mollusca, Gastropoda). Bmc Genomics. 16: 441. PMID 26054852 DOI: 10.1186/S12864-015-1648-4 |
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| 2015 |
Kang JH, Manousaki T, Franchini P, Kneitz S, Schartl M, Meyer A. Transcriptomics of two evolutionary novelties: how to make a sperm-transfer organ out of an anal fin and a sexually selected "sword" out of a caudal fin. Ecology and Evolution. 5: 848-64. PMID 25750712 DOI: 10.1002/Ece3.1390 |
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| 2014 |
Elmer KR, Fan S, Kusche H, Spreitzer ML, Kautt AF, Franchini P, Meyer A. Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes. Nature Communications. 5: 5168. PMID 25346277 DOI: 10.1038/Ncomms6168 |
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| 2014 |
Henning F, Lee HJ, Franchini P, Meyer A. Genetic mapping of horizontal stripes in Lake Victoria cichlid fishes: benefits and pitfalls of using RAD markers for dense linkage mapping. Molecular Ecology. 23: 5224-40. PMID 25039588 DOI: 10.1111/Mec.12860 |
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| 2014 |
Franchini P, Fruciano C, Frickey T, Jones JC, Meyer A. The gut microbial community of Midas cichlid fish in repeatedly evolved limnetic-benthic species pairs. Plos One. 9: e95027. PMID 24733403 DOI: 10.1371/Journal.Pone.0095027 |
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| 2014 |
Franchini P, Fruciano C, Spreitzer ML, Jones JC, Elmer KR, Henning F, Meyer A. Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes. Molecular Ecology. 23: 1828-45. PMID 24237636 DOI: 10.1111/Mec.12590 |
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| 2013 |
Gunter HM, Fan S, Xiong F, Franchini P, Fruciano C, Meyer A. Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish. Molecular Ecology. 22: 4516-31. PMID 23952004 DOI: 10.1111/Mec.12417 |
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| 2013 |
Fruciano C, Franchini P, Meyer A. Resampling-based approaches to study variation in morphological modularity. Plos One. 8: e69376. PMID 23874956 DOI: 10.1371/Journal.Pone.0069376 |
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| 2013 |
Jones JC, Fan S, Franchini P, Schartl M, Meyer A. The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing. Molecular Ecology. 22: 2986-3001. PMID 23551333 DOI: 10.1111/Mec.12269 |
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| 2013 |
Henning F, Jones JC, Franchini P, Meyer A. Transcriptomics of morphological color change in polychromatic Midas cichlids. Bmc Genomics. 14: 171. PMID 23497064 DOI: 10.1186/1471-2164-14-171 |
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| 2013 |
Manousaki T, Hull PM, Kusche H, Machado-Schiaffino G, Franchini P, Harrod C, Elmer KR, Meyer A. Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua. Molecular Ecology. 22: 650-69. PMID 23057963 DOI: 10.1111/Mec.12034 |
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| 2013 |
Solano E, Franchini P, Colangelo P, Capanna E, Castiglia R. Multiple origins of the western European house mouse in the Aeolian Archipelago: clues from mtDNA and chromosomes Biological Invasions. 15: 729-739. DOI: 10.1007/S10530-012-0322-X |
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| 2012 |
Franchini P, Sola L, Crosetti D, Milana V, Rossi AR. Low levels of population genetic structure in the gilthead sea bream, Sparus aurata, along the coast of Italy Ices Journal of Marine Science. 69: 41-50. DOI: 10.1093/Icesjms/Fsr175 |
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| 2012 |
Milana V, Franchini P, Sola L, Angiulli E, Rossi AR. Genetic structure in lagoons: the effects of habitat discontinuity and low dispersal ability on populations of Atherina boyeri Marine Biology. 159: 399-411. DOI: 10.1007/S00227-011-1817-1 |
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| 2011 |
van der Merwe M, Franchini P, Roodt-Wilding R. Differential growth-related gene expression in abalone (Haliotis midae). Marine Biotechnology (New York, N.Y.). 13: 1125-39. PMID 21533523 DOI: 10.1007/S10126-011-9376-5 |
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| 2011 |
Franchini P, van der Merwe M, Roodt-Wilding R. Transcriptome characterization of the South African abalone Haliotis midae using sequencing-by-synthesis. Bmc Research Notes. 4: 59. PMID 21396099 DOI: 10.1186/1756-0500-4-59 |
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| 2010 |
Franchini P, Colangelo P, Solano E, Capanna E, Verheyen E, Castiglia R. Reduced gene flow at pericentromeric loci in a hybrid zone involving chromosomal races of the house mouse Mus musculus domesticus. Evolution; International Journal of Organic Evolution. 64: 2020-32. PMID 20148956 DOI: 10.1111/J.1558-5646.2010.00964.X |
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| 2010 |
Franchini P, Slabbert R, Merwe MVD, Roux A, Roodt-Wilding R. Karyotype and Genome Size Estimation of Haliotis midae: Estimators to Assist Future Studies on the Evolutionary History of Haliotidae Journal of Shellfish Research. 29: 945-950. DOI: 10.2983/035.029.0428 |
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| 2010 |
Colangelo P, Castiglia R, Franchini P, Solano E. Pattern of shape variation in the eastern African gerbils of the genus Gerbilliscus (Rodentia, muridae): Environmental correlations and implication for taxonomy and systematics Mammalian Biology. 75: 302-310. DOI: 10.1016/J.Mambio.2009.05.001 |
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| 2009 |
Rossi AR, Miggiano M, Franchini P, Perrone E, Crosetti D, Sola L. Genetic comparison of temporal replicates of gilthead sea bream (Sparus aurata) from two Tyrrhenian coastal lagoons characterized by different management Journal of Applied Ichthyology. 25: 603-605. DOI: 10.1111/J.1439-0426.2009.01313.X |
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| 2008 |
Franchini P, Castiglia R, Capanna E. Reproductive isolation between chromosomal races of the house mouse Mus musculus domesticus in a parapatric contact area revealed by an analysis of multiple unlinked loci. Journal of Evolutionary Biology. 21: 502-513. PMID 18205781 DOI: 10.1111/J.1420-9101.2007.01492.X |
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