Aurelie Kapusta - Publications

Affiliations: 
2011-2016 University of Utah School of Medicine, Utah USA 

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhao X, Xiong J, Mao F, Sheng Y, Chen X, Feng L, Dui W, Yang W, Kapusta A, Feschotte C, Coyne RS, Miao W, Gao S, Liu Y. RNAi-dependent repression controls transposable elements in . Genes & Development. PMID 30808657 DOI: 10.1101/Gad.320796.118  0.601
2018 Trizzino M, Kapusta A, Brown CD. Transposable elements generate regulatory novelty in a tissue-specific fashion. Bmc Genomics. 19: 468. PMID 29914366 DOI: 10.1186/S12864-018-4850-3  0.315
2018 Holt C, Campbell M, Keays DA, Edelman N, Kapusta A, Maclary E, Domyan E, Suh A, Warren WC, Yandell M, Gilbert MTP, Shapiro MD. Improved Genome Assembly and Annotation for the Rock Pigeon (). G3 (Bethesda, Md.). PMID 29519939 DOI: 10.1534/G3.117.300443  0.36
2017 Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, ... ... Kapusta A, et al. Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8: 16153. PMID 28832025 DOI: 10.1038/Ncomms16153  0.631
2017 Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, ... ... Kapusta A, et al. Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8: 15451. PMID 28508897 DOI: 10.1038/Ncomms15451  0.604
2017 Kapusta A, Suh A, Feschotte C. Dynamics of genome size evolution in birds and mammals. Proceedings of the National Academy of Sciences of the United States of America. PMID 28179571 DOI: 10.1073/Pnas.1616702114  0.662
2016 Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, et al. Structure of the germline genome of Tetrahymenathermophila and relationship to the massively rearranged somatic genome. Elife. 5. PMID 27892853 DOI: 10.7554/Elife.19090  0.697
2016 Rius N, Guillén Y, Delprat A, Kapusta A, Feschotte C, Ruiz A. Exploration of the Drosophila buzzatii transposable element content suggests underestimation of repeats in Drosophila genomes. Bmc Genomics. 17: 344. PMID 27164953 DOI: 10.1186/S12864-016-2648-8  0.688
2016 Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, et al. Author response: Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome Elife. DOI: 10.7554/Elife.19090.045  0.662
2015 Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6  0.618
2015 Lynch VJ, Nnamani MC, Kapusta A, Brayer K, Plaza SL, Mazur EC, Emera D, Sheikh SZ, Grützner F, Bauersachs S, Graf A, Young SL, Lieb JD, DeMayo FJ, Feschotte C, et al. Ancient transposable elements transformed the uterine regulatory landscape and transcriptome during the evolution of mammalian pregnancy. Cell Reports. 10: 551-61. PMID 25640180 DOI: 10.1016/J.Celrep.2014.12.052  0.619
2015 Guillén Y, Rius N, Delprat A, Williford A, Muyas F, Puig M, Casillas S, Ràmia M, Egea R, Negre B, Mir G, Camps J, Moncunill V, Ruiz-Ruano FJ, Cabrero J, ... ... Kapusta A, et al. Genomics of ecological adaptation in cactophilic Drosophila. Genome Biology and Evolution. 7: 349-66. PMID 25552534 DOI: 10.1093/Gbe/Evu291  0.641
2015 Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, et al. A call for benchmarking transposable element annotation methods Mobile Dna. 6. DOI: 10.1186/s13100-015-0044-6  0.558
2014 Kapusta A, Feschotte C. Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. Trends in Genetics : Tig. 30: 439-52. PMID 25218058 DOI: 10.1016/J.Tig.2014.08.004  0.692
2014 Marmignon A, Bischerour J, Silve A, Fojcik C, Dubois E, Arnaiz O, Kapusta A, Malinsky S, Bétermier M. Ku-mediated coupling of DNA cleavage and repair during programmed genome rearrangements in the ciliate Paramecium tetraurelia. Plos Genetics. 10: e1004552. PMID 25166013 DOI: 10.1371/Journal.Pgen.1004552  0.394
2014 Ha H, Song J, Wang S, Kapusta A, Feschotte C, Chen KC, Xing J. A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements. Bmc Genomics. 15: 545. PMID 24981367 DOI: 10.1186/1471-2164-15-545  0.614
2014 Campos-Sánchez R, Kapusta A, Feschotte C, Chiaromonte F, Makova KD. Genomic landscape of human, bat, and ex vivo DNA transposon integrations. Molecular Biology and Evolution. 31: 1816-32. PMID 24809961 DOI: 10.1093/Molbev/Msu138  0.654
2014 Castoe TA, De Koning APJ, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, ... ... Kapusta A, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (Proceedings of the National Academy of Sciences of the United States of America (2013) 110, 51, (20645-20650) DOI: 10.1073/pnas. 1314475110) Proceedings of the National Academy of Sciences of the United States of America. 111: 3194. DOI: 10.1073/Pnas.1324133111  0.599
2013 Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, ... ... Kapusta A, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences of the United States of America. 110: 20645-50. PMID 24297902 DOI: 10.1073/Pnas.1314475110  0.666
2013 Kapusta A, Kronenberg Z, Lynch VJ, Zhuo X, Ramsay L, Bourque G, Yandell M, Feschotte C. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. Plos Genetics. 9: e1003470. PMID 23637635 DOI: 10.1371/Journal.Pgen.1003470  0.688
2013 Mitra R, Li X, Kapusta A, Mayhew D, Mitra RD, Feschotte C, Craig NL. Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon. Proceedings of the National Academy of Sciences of the United States of America. 110: 234-9. PMID 23248290 DOI: 10.1073/Pnas.1217548110  0.705
2011 Kapusta A, Matsuda A, Marmignon A, Ku M, Silve A, Meyer E, Forney JD, Malinsky S, Bétermier M. Highly precise and developmentally programmed genome assembly in Paramecium requires ligase IV-dependent end joining. Plos Genetics. 7: e1002049. PMID 21533177 DOI: 10.1371/Journal.Pgen.1002049  0.418
2011 Bouhouche K, Gout JF, Kapusta A, Bétermier M, Meyer E. Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling. Nucleic Acids Research. 39: 4249-64. PMID 21216825 DOI: 10.1093/Nar/Gkq1283  0.398
2010 Arnaiz O, Goût JF, Bétermier M, Bouhouche K, Cohen J, Duret L, Kapusta A, Meyer E, Sperling L. Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia. Bmc Genomics. 11: 547. PMID 20932287 DOI: 10.1186/1471-2164-11-547  0.405
2009 Baudry C, Malinsky S, Restituito M, Kapusta A, Rosa S, Meyer E, Bétermier M. PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia. Genes & Development. 23: 2478-83. PMID 19884254 DOI: 10.1101/Gad.547309  0.408
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