Marco A. Marra, Ph.D. - Publications

Affiliations: 
1989-1994 Medical Genetics University of British Columbia, Vancouver, Vancouver, BC, Canada 

136 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Tsang ES, Grisdale CJ, Pleasance ED, Topham JT, Mungall KL, Reisle CR, Choo C, Carreira M, Bowlby R, Karasinska JM, MacMillan D, Williamson LM, Chuah E, Moore RA, Mungall AJ, ... ... Marra MA, et al. Uncovering Clinically Relevant Gene Fusions with Integrated Genomic and Transcriptomic Profiling of Metastatic Cancers. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33148671 DOI: 10.1158/1078-0432.CCR-20-1900  0.36
2020 Collinge BJ, Ben-Neriah S, Chong LC, Boyle M, Jiang A, Miyata-Takata T, Farinha P, Craig JW, Slack GW, Ennishi D, Mottok A, Meissner B, Chavez EA, Gerrie AS, Villa D, ... ... Marra MA, et al. Impact of MYC and BCL2 structural variants in tumors of DLBCL morphology and mechanisms of false-negative MYC IHC. Blood. PMID 33120427 DOI: 10.1182/blood.2020007193  0.36
2020 Topham JT, Karasinska JM, Lee MK, Csizmok V, Williamson LM, Jang GH, Denroche RE, Tsang ES, Kalloger SE, Wong HL, O'Kane GM, Moore RA, Mungall AJ, Notta F, Loree JM, ... ... Marra MA, et al. Subtype-discordant pancreatic ductal adenocarcinoma tumors show intermediate clinical and molecular characteristics. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33051307 DOI: 10.1158/1078-0432.CCR-20-2831  0.36
2020 Pender A, Titmuss E, Pleasance ED, Fan KY, Pearson H, Brown SD, Grisdale CJ, Topham JT, Shen Y, Bonakdar M, Taylor G, Williamson LM, Mungall KL, Chuah E, Mungall AJ, ... ... Marra MA, et al. Genome and transcriptome biomarkers of response to immune checkpoint inhibitors in advanced solid tumours. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33020056 DOI: 10.1158/1078-0432.CCR-20-1163  0.36
2020 Tsang ES, Topham JT, Karasinska JM, Lee MK, Williamson LM, Mendis S, Denroche RE, Jang GH, Kalloger SE, Moore RA, Mungall AJ, Bathe OF, Tang PA, Notta F, Wilson JM, ... ... Marra MA, et al. Delving into Early Onset Pancreatic Ductal Adenocarcinoma: How Does Age Fit In? Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 32958704 DOI: 10.1158/1078-0432.CCR-20-1042  0.36
2020 Li L, Maire CL, Bilenky M, Carles A, Heravi-Moussavi A, Hong C, Tam A, Kamoh B, Cho S, Cheung D, Li I, Wong T, Nagarajan RP, Mungall AJ, Moore R, ... ... Marra MA, et al. Epigenomic programming in early fetal brain development. Epigenomics. PMID 32677466 DOI: 10.2217/epi-2019-0319  0.36
2020 Rushton CK, Arthur SE, Alcaide M, Cheung M, Jiang A, Coyle KM, Cleary KLS, Thomas N, Hilton LK, Michaud N, Daigle S, Davidson J, Bushell K, Yu S, Rys RN, ... ... Marra MA, et al. Genetic and evolutionary patterns of treatment resistance in relapsed B-cell lymphoma. Blood Advances. 4: 2886-2898. PMID 32589730 DOI: 10.1182/bloodadvances.2020001696  0.36
2020 Topham JT, Titmuss E, Pleasance ED, Williamson LM, Karasinska JM, Culibrk L, Lee MK, Mendis S, Denroche RE, Jang GH, Kalloger SE, Wong HL, Moore RA, Mungall AJ, O'Kane GM, ... ... Marra MA, et al. Endogenous retrovirus transcript levels are associated with immunogenic signatures in multiple metastatic cancer types. Molecular Cancer Therapeutics. PMID 32518206 DOI: 10.1158/1535-7163.MCT-20-0094  0.36
2020 Pararajalingam P, Coyle KM, Arthur S, Thomas N, Alcaide M, Meissner B, Boyle M, Qureshi Q, Grande BM, Rushton C, Slack GW, Mungall A, Tam C, Agarwal R, Dawson SJ, ... ... Marra MA, et al. Coding and non-coding drivers of mantle cell lymphoma identified through exome and genome sequencing. Blood. PMID 32160292 DOI: 10.1182/blood.2019002385  0.36
2020 Mendis S, Alcaide M, Topham JT, Johnson B, Morin RD, Chu J, Bosdet I, Kopetz S, Karsan A, Gill S, Laskin J, Jones SJM, Marra MA, Schaeffer DF, Renouf DJ, et al. Integration of Whole-Genome Sequencing With Circulating Tumor DNA Analysis Captures Clonal Evolution and Tumor Heterogeneity in Non-V600 BRAF Mutant Colorectal Cancer. Clinical Colorectal Cancer. PMID 32151517 DOI: 10.1016/j.clcc.2020.02.001  0.36
2020 Ennishi D, Healy S, Bashashati A, Saberi S, Hother C, Mottok A, Chan FC, Chong L, Abraham L, Kridel R, Boyle M, Meissner B, Aoki T, Takata K, Woolcock BW, ... ... Marra MA, et al. TMEM30A loss-of-function mutations drive lymphomagenesis and confer therapeutically exploitable vulnerability in B-cell lymphoma. Nature Medicine. PMID 32094924 DOI: 10.1038/s41591-020-0757-z  0.36
2019 Haile S, Corbett RD, Bilobram S, Mungall K, Grande BM, Kirk H, Pandoh P, MacLeod T, McDonald H, Bala M, Coope RJ, Moore RA, Mungall AJ, Zhao Y, Morin RD, ... ... Marra MA, et al. Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA. Plos One. 14: e0224578. PMID 31671154 DOI: 10.1371/journal.pone.0224578  0.36
2019 Suzuki H, Kumar SA, Shuai S, Diaz-Navarro A, Gutierrez-Fernandez A, De Antonellis P, Cavalli FMG, Juraschka K, Farooq H, Shibahara I, Vladoiu MC, Zhang J, Abeysundara N, Przelicki D, Skowron P, ... ... Marra MA, et al. Recurrent noncoding U1 snRNA mutations drive cryptic splicing in SHH medulloblastoma. Nature. 574: 707-711. PMID 31664194 DOI: 10.1038/s41586-019-1650-0  0.6
2019 Suzuki H, Kumar SA, Shuai S, Diaz-Navarro A, Gutierrez-Fernandez A, De Antonellis P, Cavalli FMG, Juraschka K, Farooq H, Shibahara I, Vladoiu MC, Zhang J, Abeysundara N, Przelicki D, Skowron P, ... ... Marra MA, et al. Recurrent non-coding U1-snRNA mutations drive cryptic splicing in Shh medulloblastoma. Nature. PMID 31597162 DOI: 10.1038/s41586-019-1650-0  0.6
2019 Karasinska JM, Topham JT, Kalloger S, Jang GH, Denroche RE, Culibrk L, Williamson LM, Wong HL, Lee MK, O'Kane GM, Moore RA, Mungall AJ, Moore MJ, Warren C, Metcalfe A, ... ... Marra MA, et al. Altered gene expression along the glycolysis-cholesterol synthesis axis is associated with outcome in pancreatic cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 31481506 DOI: 10.1158/1078-0432.CCR-19-1543  0.36
2019 Negri GL, Grande BM, Delaidelli A, El-Naggar A, Cochrane D, Lau CC, Triche TJ, Moore RA, Jones SJM, Montpetit A, Marra MA, Malkin D, Morin RD, Sorensen PH. Integrative genomic analysis of matched primary and metastatic pediatric osteosarcoma. The Journal of Pathology. PMID 31236944 DOI: 10.1002/path.5319  0.36
2019 Williamson LM, Steel M, Grewal JK, Thibodeau ML, Zhao EY, Loree JM, Yang KC, Gorski SM, Mungall AJ, Mungall KL, Moore RA, Marra MA, Laskin J, Renouf DJ, Schaeffer DF, et al. Genomic characterization of a well-differentiated grade 3 pancreatic neuroendocrine tumor. Cold Spring Harbor Molecular Case Studies. 5. PMID 31160355 DOI: 10.1101/mcs.a003814  0.36
2019 Jones MR, Williamson LM, Topham JT, Lee MK, Goytain A, Ho J, Denroche RE, Jang GH, Pleasance ED, Shen Y, Karasinska JM, McGhie JP, Gill S, Lim H, Moore MJ, ... ... Marra MA, et al. NRG1 gene fusions are recurrent, clinically actionable gene rearrangements in KRAS wild-type pancreatic ductal adenocarcinoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 31068372 DOI: 10.1158/1078-0432.CCR-19-0191  0.36
2019 Vladoiu MC, El-Hamamy I, Donovan LK, Farooq H, Holgado BL, Sundaravadanam Y, Ramaswamy V, Hendrikse LD, Kumar S, Mack SC, Lee JJY, Fong V, Juraschka K, Przelicki D, Michealraj A, ... ... Marra MA, et al. Childhood cerebellar tumours mirror conserved fetal transcriptional programs. Nature. PMID 31043743 DOI: 10.1038/s41586-019-1158-7  0.6
2019 Hoffman M, Gillmor A, Kunz DJ, Johnston MJ, Nikolic A, Narta K, Zarrei M, King JC, Ellestad K, Dang NH, Cavalli FMG, Kushida M, Coutinho FJ, Zhu Y, Luu B, ... ... Marra MA, et al. Intratumoral genetic and functional heterogeneity in pediatric glioblastoma. Cancer Research. PMID 30877103 DOI: 10.1158/0008-5472.CAN-18-3441  0.6
2019 Pandoh PK, Corbett RD, McDonald H, Alcaide M, Kirk H, Trinh E, Haile S, MacLeod T, Smailus D, Bilobram S, Mungall AJ, Ma Y, Moore RA, Coope R, Zhao Y, ... ... Marra MA, et al. A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood. Biotechniques. 66: 85-92. PMID 30744412 DOI: 10.2144/btn-2018-0148  0.36
2019 Ennishi D, Takata K, Beguelin W, Duns G, Mottok A, Farinha P, Bashashati A, Saberi S, Boyle M, Meissner B, Ben-Neriah S, Woolcock BW, Telenius A, Lai D, Teater M, ... ... Marra MA, et al. Molecular and Genetic Characterization of MHC Deficiency Identifies EZH2 as Therapeutic Target for Enhancing Immune Recognition. Cancer Discovery. PMID 30705065 DOI: 10.1158/2159-8290.CD-18-1090  0.36
2019 Grande BM, Gerhard DS, Jiang A, Griner NB, Abramson JS, Alexander TB, Allen H, Ayers LW, Bethony JM, Bhatia K, Bowen J, Casper C, Choi JK, Culibrk L, Davidsen TM, ... ... Marra MA, et al. Genome-wide discovery of somatic coding and non-coding mutations in pediatric endemic and sporadic Burkitt lymphoma. Blood. PMID 30617194 DOI: 10.1182/blood-2018-09-871418  0.36
2018 Wong HL, Zhao EY, Jones MR, Reisle CR, Eirew P, Pleasance E, Grande BM, Karasinska JM, Kalloger SE, Lim HJ, Shen Y, Yip S, Morin RD, Laskin J, Marra MA, et al. Temporal Dynamics of Genomic Alterations in a Germline-Mutated Pancreatic Cancer With Low Genomic Instability Burden but Exceptional Response to Fluorouracil, Oxaliplatin, Leucovorin, and Irinotecan. Jco Precision Oncology. 2. PMID 32913994 DOI: 10.1200/PO.18.00057  0.36
2018 Newton Y, Rassekh SR, Deyell RJ, Shen Y, Jones MR, Dunham C, Yip S, Leelakumari S, Zhu J, McColl D, Swatloski T, Salama SR, Ng T, Hendson G, Lee AF, ... ... Marra MA, et al. Comparative RNA-Sequencing Analysis Benefits a Pediatric Patient With Relapsed Cancer. Jco Precision Oncology. 2. PMID 31372595 DOI: 10.1200/PO.17.00198  0.72
2018 Ennishi D, Jiang A, Boyle M, Collinge B, Grande BM, Ben-Neriah S, Rushton C, Tang J, Thomas N, Slack GW, Farinha P, Takata K, Miyata-Takata T, Craig J, Mottok A, ... ... Marra MA, et al. Double-Hit Gene Expression Signature Defines a Distinct Subgroup of Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. JCO1801583. PMID 30523716 DOI: 10.1200/JCO.18.01583  0.36
2018 Haile S, Corbett RD, Bilobram S, Bye MH, Kirk H, Pandoh P, Trinh E, MacLeod T, McDonald H, Bala M, Miller D, Novik K, Coope RJ, Moore RA, Zhao Y, ... ... Marra MA, et al. Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples. Nucleic Acids Research. PMID 30418619 DOI: 10.1093/nar/gky1142  0.36
2018 Chong LC, Ben-Neriah S, Slack GW, Freeman C, Ennishi D, Mottok A, Collinge B, Abrisqueta P, Farinha P, Boyle M, Meissner B, Kridel R, Gerrie AS, Villa D, Savage KJ, ... ... Marra MA, et al. High-resolution architecture and partner genes of rearrangements in lymphoma with DLBCL morphology. Blood Advances. 2: 2755-2765. PMID 30348671 DOI: 10.1182/bloodadvances.2018023572  0.36
2018 Arthur SE, Jiang A, Grande BM, Alcaide M, Cojocaru R, Rushton CK, Mottok A, Hilton LK, Lat PK, Zhao EY, Culibrk L, Ennishi D, Jessa S, Chong L, Thomas N, ... ... Marra MA, et al. Genome-wide discovery of somatic regulatory variants in diffuse large B-cell lymphoma. Nature Communications. 9: 4001. PMID 30275490 DOI: 10.1038/s41467-018-06354-3  0.36
2018 Garzia L, Kijima N, Morrissy AS, De Antonellis P, Guerreiro-Stucklin A, Holgado BL, Wu X, Wang X, Parsons M, Zayne K, Manno A, Kuzan-Fischer C, Nor C, Donovan LK, Liu J, ... ... Marra MA, et al. A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases. Cell. 173: 1549. PMID 29856958 DOI: 10.1016/j.cell.2018.05.033  0.6
2018 Garzia L, Kijima N, Morrissy AS, De Antonellis P, Guerreiro-Stucklin A, Holgado BL, Wu X, Wang X, Parsons M, Zayne K, Manno A, Kuzan-Fischer C, Nor C, Donovan LK, Liu J, ... ... Marra MA, et al. A Hematogenous Route for Medulloblastoma Leptomeningeal Metastases. Cell. 172: 1050-1062.e14. PMID 29474906 DOI: 10.1016/j.cell.2018.01.038  0.6
2017 Wong HL, Yang KC, Shen Y, Zhao EY, Loree JM, Kennecke HF, Kalloger SE, Karasinska JM, Lim HJ, Mungall AJ, Feng X, Davies JM, Schrader K, Zhou C, Karsan A, ... ... Marra MA, et al. Molecular characterisation of metastatic pancreatic neuroendocrine tumours (PNETs) using whole genome and transcriptome sequencing. Cold Spring Harbor Molecular Case Studies. PMID 29092957 DOI: 10.1101/mcs.a002329  0.36
2017 Siu C, Wiseman SM, Gakkhar S, Heravi-Moussavi A, Bilenky M, Carles A, Sierocinski T, Tam A, Zhao EY, Kasaian K, Moore RA, Mungall AJ, Walker B, Thomson T, Marra MA, et al. Characterization of the human thyroid epigenome. The Journal of Endocrinology. PMID 28808080 DOI: 10.1530/JOE-17-0145  0.36
2017 Northcott PA, Buchhalter I, Morrissy AS, Hovestadt V, Weischenfeldt J, Ehrenberger T, Gröbner S, Segura-Wang M, Zichner T, Rudneva VA, Warnatz HJ, Sidiropoulos N, Phillips AH, Schumacher S, Kleinheinz K, ... ... Marra MA, et al. The whole-genome landscape of medulloblastoma subtypes. Nature. 547: 311-317. PMID 28726821 DOI: 10.1038/nature22973  0.6
2017 Haile S, Corbett RD, MacLeod T, Bilobram S, Smailus D, Tsao P, Kirk H, McDonald H, Pandoh P, Bala M, Hirst M, Miller D, Moore RA, Mungall AJ, Schein J, ... ... Marra MA, et al. Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing. Bmc Genomics. 18: 515. PMID 28679365 DOI: 10.1186/s12864-017-3900-6  0.36
2017 Sloma I, Mitjavila-Garcia M, Feraud O, Griscelli F, Oudrhiri N, El Marsafy S, Gobbo E, Divers D, Proust A, Smadja DM, Desterke C, Carles A, Ma Y, Hirst M, Marra MA, et al. Whole genome analysis reveals unexpected dynamics of mutant subclone development in a patient with JAK2-V617F-positive chronic myeloid leukemia. Experimental Hematology. PMID 28602946 DOI: 10.1016/j.exphem.2017.05.007  0.36
2017 Haile S, Pandoh P, McDonald H, Corbett RD, Tsao P, Kirk H, MacLeod T, Jones M, Bilobram S, Brooks D, Smailus D, Steidl C, Scott DW, Bala M, Hirst M, ... ... Marra MA, et al. Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis. Plos One. 12: e0178706. PMID 28570594 DOI: 10.1371/journal.pone.0178706  0.36
2017 Tech K, Tikunov AP, Farooq H, Morrissy AS, Meidinger J, Fish T, Green SC, Liu H, Li Y, Mungall AJ, Moore RA, Ma Y, Jones SJ, Marra MA, Vander Heiden MG, et al. Pyruvate kinase inhibits proliferation during postnatal cerebellar neurogenesis and suppresses medulloblastoma formation. Cancer Research. PMID 28515149 DOI: 10.1158/0008-5472.CAN-16-3304  0.6
2017 Pan Y, Robertson G, Pedersen L, Lim E, Hernandez-Herrera A, Rowat AC, Patil SL, Chan CK, Wen Y, Zhang X, Basu-Roy U, Mansukhani A, Chu A, Sipahimalani P, Bowlby R, ... ... Marra MA, et al. Correction: miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer. Oncotarget. 8: 17406. PMID 28403581 DOI: 10.18632/oncotarget.15921  0.36
2017 Morrissy AS, Cavalli FM, Remke M, Ramaswamy V, Shih DJ, Holgado BL, Farooq H, Donovan LK, Garzia L, Agnihotri S, Kiehna EN, Mercier E, Mayoh C, Papillon-Cavanagh S, Nikbakht H, ... ... Marra MA, et al. Spatial heterogeneity in medulloblastoma. Nature Genetics. PMID 28394352 DOI: 10.1038/ng.3838  0.6
2017 Ennishi D, Mottok A, Ben-Neriah S, Shulha HP, Farinha P, Chan FC, Meissner B, Boyle M, Hother C, Kridel R, Lai D, Saberi S, Bashashati A, Shah SP, Morin RD, ... Marra MA, et al. Genetic profiling of MYC and BCL2 in diffuse large B-cell lymphoma determines cell of origin-specific clinical impact. Blood. PMID 28351934 DOI: 10.1182/blood-2016-11-747022  0.36
2016 Kridel R, Chan FC, Mottok A, Boyle M, Farinha P, Tan K, Meissner B, Bashashati A, McPherson A, Roth A, Shumansky K, Yap D, Ben-Neriah S, Rosner J, Smith MA, ... ... Marra MA, et al. Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study. Plos Medicine. 13: e1002197. PMID 27959929 DOI: 10.1371/journal.pmed.1002197  0.36
2016 Chan CK, Pan Y, Nyberg K, Marra MA, Lim EL, Jones SJ, Maar D, Gibb EA, Gunaratne PH, Robertson AG, Rowat AC. Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour. Open Biology. 6. PMID 27906134 DOI: 10.1098/rsob.160275  0.36
2016 Pellacani D, Bilenky M, Kannan N, Heravi-Moussavi A, Knapp DJ, Gakkhar S, Moksa M, Carles A, Moore R, Mungall AJ, Marra MA, Jones SJ, Aparicio S, Hirst M, Eaves CJ. Analysis of Normal Human Mammary Epigenomes Reveals Cell-Specific Active Enhancer States and Associated Transcription Factor Networks. Cell Reports. 17: 2060-2074. PMID 27851968 DOI: 10.1016/j.celrep.2016.10.058  0.36
2016 Grinshtein N, Rioseco CC, Marcellus R, Uehling D, Aman A, Lun X, Muto O, Podmore L, Lever J, Shen Y, Blough MD, Cairncross GJ, Robbins SM, Jones SJ, Marra MA, et al. Small molecule epigenetic screen identifies novel EZH2 and HDAC inhibitors that target glioblastoma brain tumor-initiating cells. Oncotarget. PMID 27449082 DOI: 10.18632/oncotarget.10661  0.36
2016 Chong LC, Twa DD, Mottok A, Ben-Neriah S, Woolcock BW, Zhao Y, Savage KJ, Marra MA, Scott DW, Gascoyne RD, Morin RD, Mungall AJ, Steidl C. Comprehensive characterization of programmed death ligand structural rearrangements in B-cell non-Hodgkin lymphomas. Blood. PMID 27268263 DOI: 10.1182/blood-2015-11-683003  0.36
2016 Kasaian K, Wiseman SM, Walker BA, Schein JE, Hirst M, Moore RA, Mungall AJ, Marra MA, Jones SJ. Putative BRAF activating fusion in a medullary thyroid cancer. Cold Spring Harbor Molecular Case Studies. 2: a000729. PMID 27148585 DOI: 10.1101/mcs.a000729  0.36
2016 Oh S, Flynn RA, Floor SN, Purzner J, Martin L, Do BT, Schubert S, Vaka D, Morrissy S, Li Y, Kool M, Hovestadt V, Jones DT, Northcott PA, Risch T, ... ... Marra MA, et al. Medulloblastoma-associated DDX3 variant selectively alters the translational response to stress. Oncotarget. 7: 28169-82. PMID 27058758 DOI: 10.18632/oncotarget.8612  0.72
2016 Chun HE, Lim EL, Heravi-Moussavi A, Saberi S, Mungall KL, Bilenky M, Carles A, Tse K, Shlafman I, Zhu K, Qian JQ, Palmquist DL, He A, Long W, Goya R, ... ... Marra MA, et al. Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways. Cancer Cell. 29: 394-406. PMID 26977886 DOI: 10.1016/j.ccell.2016.02.009  0.36
2016 Pon JR, Marra MA. Clinical impact of molecular features in diffuse large B-cell lymphoma and follicular lymphoma. Blood. 127: 181-6. PMID 26447189 DOI: 10.1182/blood-2015-07-658401  0.72
2015 Kasaian K, Wiseman SM, Walker BA, Schein JE, Zhao Y, Hirst M, Moore RA, Mungall AJ, Marra MA, Jones SJ. The genomic and transcriptomic landscape of anaplastic thyroid cancer: implications for therapy. Bmc Cancer. 15: 984. PMID 26680454 DOI: 10.1186/s12885-015-1955-9  0.36
2015 Perlman EJ, Gadd S, Arold ST, Radhakrishnan A, Gerhard DS, Jennings L, Huff V, Guidry Auvil JM, Davidsen TM, Dome JS, Meerzaman D, Hsu CH, Nguyen C, Anderson J, Ma Y, ... ... Marra MA, et al. MLLT1 YEATS domain mutations in clinically distinctive Favourable Histology Wilms tumours. Nature Communications. 6: 10013. PMID 26635203 DOI: 10.1038/ncomms10013  0.72
2015 Nielsen JS, Sedgwick C, Shahid A, Zong Z, Brumme ZL, Yu S, Liu L, Kroeger DR, Treon SP, Connors JM, Gascoyne RD, Berry BR, Marra MA, Morin RD, Macpherson N, et al. Toward personalized lymphoma immunotherapy: Identification of common driver mutations recognized by patient CD8+ T cells. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 26631611 DOI: 10.1158/1078-0432.CCR-15-2023  0.36
2015 Holm F, Hellqvist E, Mason CN, Ali SA, Delos-Santos N, Barrett CL, Chun HJ, Minden MD, Moore RA, Marra MA, Runza V, Frazer KA, Sadarangani A, Jamieson CH. Reversion to an embryonic alternative splicing program enhances leukemia stem cell self-renewal. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621726 DOI: 10.1073/pnas.1506943112  0.72
2015 Garside VC, Cullum R, Alder O, Lu DY, Vander Werff R, Bilenky M, Zhao Y, Jones SJ, Marra MA, Underhill TM, Hoodless PA. SOX9 modulates the expression of key transcription factors required for heart valve development. Development (Cambridge, England). PMID 26525672 DOI: 10.1242/dev.125252  0.36
2015 LeBlanc VG, Marra MA. Next-Generation Sequencing Approaches in Cancer: Where Have They Brought Us and Where Will They Take Us? Cancers. 7: 1925-58. PMID 26404381 DOI: 10.3390/cancers7030869  0.72
2015 Kridel R, Mottok A, Farinha P, Ben-Neriah S, Ennishi D, Zheng Y, Chavez EA, Shulha HP, Tan K, Chan FC, Boyle M, Meissner B, Telenius A, Sehn LH, Marra MA, et al. Cell-of-origin of transformed follicular lymphoma. Blood. PMID 26307535 DOI: 10.1182/blood-2015-06-649905  0.72
2015 Chu A, Robertson G, Brooks D, Mungall AJ, Birol I, Coope R, Ma Y, Jones S, Marra MA. Large-scale profiling of microRNAs for The Cancer Genome Atlas. Nucleic Acids Research. PMID 26271990 DOI: 10.1093/nar/gkv808  0.72
2015 Pon JR, Wong J, Saberi S, Alder O, Moksa M, Grace Cheng SW, Morin GB, Hoodless PA, Hirst M, Marra MA. MEF2B mutations in non-Hodgkin lymphoma dysregulate cell migration by decreasing MEF2B target gene activation. Nature Communications. 6: 7953. PMID 26245647 DOI: 10.1038/ncomms8953  0.72
2015 Lebovitz CB, Robertson AG, Goya R, Jones SJ, Morin RD, Marra MA, Gorski SM. Cross-cancer profiling of molecular alterations within the human autophagy interaction network. Autophagy. 0. PMID 26208877 DOI: 10.1080/15548627.2015.1067362  0.36
2015 Schmouth JF, Arenillas D, Corso-Díaz X, Xie YY, Bohacec S, Banks KG, Bonaguro RJ, Wong SH, Jones SJ, Marra MA, Simpson EM, Wasserman WW. Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development. Bmc Genomics. 16: 545. PMID 26204903 DOI: 10.1186/s12864-015-1770-3  0.36
2015 Bose P, Pleasance ED, Jones M, Shen Y, Ch'ng C, Reisle C, Schein JE, Mungall AJ, Moore R, Ma Y, Sheffield BS, Thomson T, Rasmussen S, Ng T, Yip S, ... ... Marra MA, et al. Integrative genomic analysis of ghost cell odontogenic carcinoma. Oral Oncology. 51: e71-5. PMID 26173781 DOI: 10.1016/j.oraloncology.2015.06.013  0.72
2015 Cusulin C, Chesnelong C, Bose P, Bilenky M, Kopciuk K, Chan JA, Cairncross JG, Jones SJ, Marra MA, Luchman HA, Weiss S. Precursor States of Brain Tumor Initiating Cell Lines Are Predictive of Survival in Xenografts and Associated with Glioblastoma Subtypes. Stem Cell Reports. PMID 26095605 DOI: 10.1016/j.stemcr.2015.05.010  0.72
2015 Sadarangani A, Pineda G, Lennon KM, Chun HJ, Shih A, Schairer AE, Court AC, Goff DJ, Prashad SL, Geron I, Wall R, McPherson JD, Moore RA, Pu M, Bao L, ... ... Marra MA, et al. GLI2 inhibition abrogates human leukemia stem cell dormancy. Journal of Translational Medicine. 13: 98. PMID 25889765 DOI: 10.1186/s12967-015-0453-9  0.72
2015 Chittaranjan S, Xu J, Kuzyk M, Dullat HK, Wilton J, DeVorkin L, Lebovitz C, Morin GB, Marra MA, Gorski SM. The Drosophila TIPE family member Sigmar interacts with the Ste20-like kinase Misshapen and modulates JNK signaling, cytoskeletal remodeling and autophagy. Biology Open. 4: 672-84. PMID 25836674 DOI: 10.1242/bio.20148417  0.36
2015 Zahir FR, Marra MA. Use of affymetrix arrays in the diagnosis of gene copy-number variation. Current Protocols in Human Genetics / Editorial Board, Jonathan L. Haines ... [Et Al.]. 85: 8.13.1-8.13.13. PMID 25827348 DOI: 10.1002/0471142905.hg0813s85  0.72
2015 Sheffield BS, Tinker AV, Shen Y, Hwang H, Li-Chang HH, Pleasance E, Ch'ng C, Lum A, Lorette J, McConnell YJ, Sun S, Jones SJ, Gown AM, Huntsman DG, Schaeffer DF, ... ... Marra MA, et al. Personalized oncogenomics: clinical experience with malignant peritoneal mesothelioma using whole genome sequencing. Plos One. 10: e0119689. PMID 25798586 DOI: 10.1371/journal.pone.0119689  0.72
2015 Lim EL, Trinh DL, Scott DW, Chu A, Krzywinski M, Zhao Y, Robertson AG, Mungall AJ, Schein J, Boyle M, Mottok A, Ennishi D, Johnson NA, Steidl C, Connors JM, ... ... Marra MA, et al. Comprehensive miRNA sequence analysis reveals survival differences in diffuse large B-cell lymphoma patients. Genome Biology. 16: 18. PMID 25723320 DOI: 10.1186/s13059-014-0568-y  0.72
2015 Twa DD, Mottok A, Chan FC, Ben-Neriah S, Woolcock BW, Tan KL, Mungall AJ, McDonald H, Zhao Y, Lim RS, Nelson BH, Milne K, Shah SP, Morin RD, Marra MA, et al. Recurrent genomic rearrangements in primary testicular lymphoma. The Journal of Pathology. 236: 136-41. PMID 25712539 DOI: 10.1002/path.4522  0.72
2015 Anglesio MS, Bashashati A, Wang YK, Senz J, Ha G, Yang W, Aniba MR, Prentice LM, Farahani H, Li Chang H, Karnezis AN, Marra MA, Yong PJ, Hirst M, Gilks B, et al. Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden. The Journal of Pathology. 236: 201-9. PMID 25692284 DOI: 10.1002/path.4516  0.72
2015 Elliott G, Hong C, Xing X, Zhou X, Li D, Coarfa C, Bell RJ, Maire CL, Ligon KL, Sigaroudinia M, Gascard P, Tlsty TD, Harris RA, Schalkwyk LC, Bilenky M, ... ... Marra MA, et al. Intermediate DNA methylation is a conserved signature of genome regulation. Nature Communications. 6: 6363. PMID 25691127 DOI: 10.1038/ncomms7363  0.72
2015 Gascard P, Bilenky M, Sigaroudinia M, Zhao J, Li L, Carles A, Delaney A, Tam A, Kamoh B, Cho S, Griffith M, Chu A, Robertson G, Cheung D, Li I, ... ... Marra MA, et al. Epigenetic and transcriptional determinants of the human breast. Nature Communications. 6: 6351. PMID 25690954 DOI: 10.1038/ncomms7351  0.72
2015 Kasaian K, Chindris AM, Wiseman SM, Mungall KL, Zeng T, Tse K, Schein JE, Rivera M, Necela BM, Kachergus JM, Casler JD, Mungall AJ, Moore RA, Marra MA, Copland JA, et al. MEN1 mutations in Hürthle cell (oncocytic) thyroid carcinoma. The Journal of Clinical Endocrinology and Metabolism. 100: E611-5. PMID 25625803 DOI: 10.1210/jc.2014-3622  0.72
2015 Eirew P, Steif A, Khattra J, Ha G, Yap D, Farahani H, Gelmon K, Chia S, Mar C, Wan A, Laks E, Biele J, Shumansky K, Rosner J, McPherson A, ... ... Marra MA, et al. Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution. Nature. 518: 422-6. PMID 25470049 DOI: 10.1038/nature13952  0.72
2015 Chan FC, Telenius A, Healy S, Ben-Neriah S, Mottok A, Lim R, Drake M, Hu S, Ding J, Ha G, Scott DW, Kridel R, Bashashati A, Rogic S, Johnson N, ... ... Marra MA, et al. An RCOR1 loss-associated gene expression signature identifies a prognostically significant DLBCL subgroup. Blood. 125: 959-66. PMID 25395426 DOI: 10.1182/blood-2013-06-507152  0.72
2014 Alder O, Cullum R, Lee S, Kan AC, Wei W, Yi Y, Garside VC, Bilenky M, Griffith M, Morrissy AS, Robertson GA, Thiessen N, Zhao Y, Chen Q, Pan D, ... ... Marra MA, et al. Hippo signaling influences HNF4A and FOXA2 enhancer switching during hepatocyte differentiation. Cell Reports. 9: 261-71. PMID 25263553 DOI: 10.1016/j.celrep.2014.08.046  0.72
2014 Berg T, Thoene S, Yap D, Wee T, Schoeler N, Rosten P, Lim E, Bilenky M, Mungall AJ, Oellerich T, Lee S, Lai CK, Umlandt P, Salmi A, Chang H, ... ... Marra MA, et al. A transgenic mouse model demonstrating the oncogenic role of mutations in the polycomb-group gene EZH2 in lymphomagenesis. Blood. 123: 3914-24. PMID 24802772 DOI: 10.1182/blood-2012-12-473439  0.72
2013 Bosdet IE, Docking TR, Butterfield YS, Mungall AJ, Zeng T, Coope RJ, Yorida E, Chow K, Bala M, Young SS, Hirst M, Birol I, Moore RA, Jones SJ, Marra MA, et al. A clinically validated diagnostic second-generation sequencing assay for detection of hereditary BRCA1 and BRCA2 mutations. The Journal of Molecular Diagnostics : Jmd. 15: 796-809. PMID 24094589 DOI: 10.1016/j.jmoldx.2013.07.004  0.72
2013 Morin RD, Mungall K, Pleasance E, Mungall AJ, Goya R, Huff RD, Scott DW, Ding J, Roth A, Chiu R, Corbett RD, Chan FC, Mendez-Lago M, Trinh DL, Bolger-Munro M, ... ... Marra MA, et al. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing. Blood. 122: 1256-65. PMID 23699601 DOI: 10.1182/blood-2013-02-483727  0.72
2013 Trinh DL, Scott DW, Morin RD, Mendez-Lago M, An J, Jones SJ, Mungall AJ, Zhao Y, Schein J, Steidl C, Connors JM, Gascoyne RD, Marra MA. Analysis of FOXO1 mutations in diffuse large B-cell lymphoma. Blood. 121: 3666-74. PMID 23460611 DOI: 10.1182/blood-2013-01-479865  0.72
2013 Pugh TJ, Morozova O, Attiyeh EF, Asgharzadeh S, Wei JS, Auclair D, Carter SL, Cibulskis K, Hanna M, Kiezun A, Kim J, Lawrence MS, Lichenstein L, McKenna A, Pedamallu CS, ... ... Marra MA, et al. The genetic landscape of high-risk neuroblastoma. Nature Genetics. 45: 279-84. PMID 23334666 DOI: 10.1038/ng.2529  0.72
2013 Chand D, Yamazaki Y, Ruuth K, Schönherr C, Martinsson T, Kogner P, Attiyeh EF, Maris J, Morozova O, Marra MA, Ohira M, Nakagawara A, Sandström PE, Palmer RH, Hallberg B. Cell culture and Drosophila model systems define three classes of anaplastic lymphoma kinase mutations in neuroblastoma. Disease Models & Mechanisms. 6: 373-82. PMID 23104988 DOI: 10.1242/dmm.010348  0.72
2012 Khodabakhshi AH, Morin RD, Fejes AP, Mungall AJ, Mungall KL, Bolger-Munro M, Johnson NA, Connors JM, Gascoyne RD, Marra MA, Birol I, Jones SJM. Recurrent targets of aberrant somatic hypermutation in lymphoma Oncotarget. 3: 1308-1319. PMID 23131835  0.72
2012 Cheng SW, Kuzyk MA, Moradian A, Ichu TA, Chang VC, Tien JF, Vollett SE, Griffith M, Marra MA, Morin GB. Interaction of cyclin-dependent kinase 12/CrkRS with cyclin K1 is required for the phosphorylation of the C-terminal domain of RNA polymerase II. Molecular and Cellular Biology. 32: 4691-704. PMID 22988298 DOI: 10.1128/MCB.06267-11  0.6
2012 Crisan A, Goya R, Ha G, Ding J, Prentice LM, Oloumi A, Senz J, Zeng T, Tse K, Delaney A, Marra MA, Huntsman DG, Hirst M, Aparicio S, Shah S. Mutation discovery in regions of segmental cancer genome amplifications with CoNAn-SNV: a mixture model for next generation sequencing of tumors. Plos One. 7: e41551. PMID 22916110 DOI: 10.1371/journal.pone.0041551  0.36
2012 Roberts KG, Morin RD, Zhang J, Hirst M, Zhao Y, Su X, Chen SC, Payne-Turner D, Churchman ML, Harvey RC, Chen X, Kasap C, Yan C, Becksfort J, Finney RP, ... ... Marra MA, et al. Genetic alterations activating kinase and cytokine receptor signaling in high-risk acute lymphoblastic leukemia. Cancer Cell. 22: 153-66. PMID 22897847 DOI: 10.1016/j.ccr.2012.06.005  0.72
2012 Ha G, Roth A, Lai D, Bashashati A, Ding J, Goya R, Giuliany R, Rosner J, Oloumi A, Shumansky K, Chin SF, Turashvili G, Hirst M, Caldas C, Marra MA, et al. Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer. Genome Research. 22: 1995-2007. PMID 22637570 DOI: 10.1101/gr.137570.112  0.72
2012 Scott DW, Mungall KL, Ben-Neriah S, Rogic S, Morin RD, Slack GW, Tan KL, Chan FC, Lim RS, Connors JM, Marra MA, Mungall AJ, Steidl C, Gascoyne RD. TBL1XR1/TP63: a novel recurrent gene fusion in B-cell non-Hodgkin lymphoma. Blood. 119: 4949-52. PMID 22496164 DOI: 10.1182/blood-2012-02-414441  0.72
2012 Shah SP, Roth A, Goya R, Oloumi A, Ha G, Zhao Y, Turashvili G, Ding J, Tse K, Haffari G, Bashashati A, Prentice LM, Khattra J, Burleigh A, Yap D, ... ... Marra MA, et al. The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature. 486: 395-9. PMID 22495314 DOI: 10.1038/nature10933  0.72
2012 Baradaran-Heravi A, Cho KS, Tolhuis B, Sanyal M, Morozova O, Morimoto M, Elizondo LI, Bridgewater D, Lubieniecka J, Beirnes K, Myung C, Leung D, Fam HK, Choi K, Huang Y, ... ... Marra MA, et al. Penetrance of biallelic SMARCAL1 mutations is associated with environmental and genetic disturbances of gene expression. Human Molecular Genetics. 21: 2572-87. PMID 22378147 DOI: 10.1093/hmg/dds083  0.72
2012 Kridel R, Meissner B, Rogic S, Boyle M, Telenius A, Woolcock B, Gunawardana J, Jenkins C, Cochrane C, Ben-Neriah S, Tan K, Morin RD, Opat S, Sehn LH, Connors JM, ... Marra MA, et al. Whole transcriptome sequencing reveals recurrent NOTCH1 mutations in mantle cell lymphoma. Blood. 119: 1963-71. PMID 22210878 DOI: 10.1182/blood-2011-11-391474  0.36
2012 Yip S, Butterfield YS, Morozova O, Chittaranjan S, Blough MD, An J, Birol I, Chesnelong C, Chiu R, Chuah E, Corbett R, Docking R, Firme M, Hirst M, Jackman S, ... ... Marra MA, et al. Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers. The Journal of Pathology. 226: 7-16. PMID 22072542 DOI: 10.1002/path.2995  0.72
2011 Morin RD, Mendez-Lago M, Mungall AJ, Goya R, Mungall KL, Corbett RD, Johnson NA, Severson TM, Chiu R, Field M, Jackman S, Krzywinski M, Scott DW, Trinh DL, Tamura-Wells J, ... ... Marra MA, et al. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma Nature. 476: 298-303. PMID 21796119 DOI: 10.1038/nature10351  0.72
2011 Morrissy AS, Griffith M, Marra MA. Extensive relationship between antisense transcription and alternative splicing in the human genome. Genome Research. 21: 1203-12. PMID 21719572 DOI: 10.1101/gr.113431.110  0.6
2011 O'Connor MD, Wederell E, Robertson G, Delaney A, Morozova O, Poon SS, Yap D, Fee J, Zhao Y, McDonald H, Zeng T, Hirst M, Marra MA, Aparicio SA, Eaves CJ. Retinoblastoma-binding proteins 4 and 9 are important for human pluripotent stem cell maintenance. Experimental Hematology. 39: 866-79.e1. PMID 21689726 DOI: 10.1016/j.exphem.2011.05.008  0.72
2011 Kuchenbauer F, Mah SM, Heuser M, McPherson A, Rüschmann J, Rouhi A, Berg T, Bullinger L, Argiropoulos B, Morin RD, Lai D, Starczynowski DT, Karsan A, Eaves CJ, Watahiki A, ... ... Marra MA, et al. Comprehensive analysis of mammalian miRNA* species and their role in myeloid cells. Blood. 118: 3350-8. PMID 21628414 DOI: 10.1182/blood-2010-10-312454  0.72
2011 McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, et al. deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data. Plos Computational Biology. 7: e1001138. PMID 21625565 DOI: 10.1371/journal.pcbi.1001138  0.72
2011 Yap DB, Chu J, Berg T, Schapira M, Cheng SW, Moradian A, Morin RD, Mungall AJ, Meissner B, Boyle M, Marquez VE, Marra MA, Gascoyne RD, Humphries RK, Arrowsmith CH, et al. Somatic mutations at EZH2 Y641 act dominantly through a mechanism of selectively altered PRC2 catalytic activity, to increase H3K27 trimethylation. Blood. 117: 2451-9. PMID 21190999 DOI: 10.1182/blood-2010-11-321208  0.72
2010 McLarren KW, Severson TM, du Souich C, Stockton DW, Kratz LE, Cunningham D, Hendson G, Morin RD, Wu D, Paul JE, An J, Nelson TN, Chou A, DeBarber AE, Merkens LS, ... ... Marra MA, et al. Hypomorphic temperature-sensitive alleles of NSDHL cause CK syndrome. American Journal of Human Genetics. 87: 905-14. PMID 21129721 DOI: 10.1016/j.ajhg.2010.11.004  0.72
2010 Robertson G, Schein J, Chiu R, Corbett R, Field M, Jackman SD, Mungall K, Lee S, Okada HM, Qian JQ, Griffith M, Raymond A, Thiessen N, Cezard T, Butterfield YS, ... ... Marra MA, et al. De novo assembly and analysis of RNA-seq data. Nature Methods. 7: 909-12. PMID 20935650 DOI: 10.1038/nmeth.1517  0.72
2010 Cheung KJ, Johnson NA, Affleck JG, Severson T, Steidl C, Ben-Neriah S, Schein J, Morin RD, Moore R, Shah SP, Qian H, Paul JE, Telenius A, Relander T, Lam W, ... ... Marra MA, et al. Acquired TNFRSF14 mutations in follicular lymphoma are associated with worse prognosis. Cancer Research. 70: 9166-74. PMID 20884631 DOI: 10.1158/0008-5472.CAN-10-2460  0.36
2010 Romanuik TL, Wang G, Morozova O, Delaney A, Marra MA, Sadar MD. LNCaP Atlas: gene expression associated with in vivo progression to castration-recurrent prostate cancer. Bmc Medical Genomics. 3: 43. PMID 20868494 DOI: 10.1186/1755-8794-3-43  0.72
2010 Jinno H, Morozova O, Jones KL, Biernaskie JA, Paris M, Hosokawa R, Rudnicki MA, Chai Y, Rossi F, Marra MA, Miller FD. Convergent genesis of an adult neural crest-like dermal stem cell from distinct developmental origins. Stem Cells (Dayton, Ohio). 28: 2027-40. PMID 20848654 DOI: 10.1002/stem.525  0.72
2010 Griffith M, Griffith OL, Mwenifumbo J, Goya R, Morrissy AS, Morin RD, Corbett R, Tang MJ, Hou YC, Pugh TJ, Robertson G, Chittaranjan S, Ally A, Asano JK, Chan SY, ... ... Marra MA, et al. Alternative expression analysis by RNA sequencing. Nature Methods. 7: 843-7. PMID 20835245 DOI: 10.1038/nmeth.1503  0.72
2010 Smith KM, Datti A, Fujitani M, Grinshtein N, Zhang L, Morozova O, Blakely KM, Rotenberg SA, Hansford LM, Miller FD, Yeger H, Irwin MS, Moffat J, Marra MA, Baruchel S, et al. Selective targeting of neuroblastoma tumour-initiating cells by compounds identified in stem cell-based small molecule screens. Embo Molecular Medicine. 2: 371-84. PMID 20721990 DOI: 10.1002/emmm.201000093  0.72
2010 Jones SJ, Laskin J, Li YY, Griffith OL, An J, Bilenky M, Butterfield YS, Cezard T, Chuah E, Corbett R, Fejes AP, Griffith M, Yee J, Martin M, Mayo M, ... ... Marra MA, et al. Evolution of an adenocarcinoma in response to selection by targeted kinase inhibitors. Genome Biology. 11: R82. PMID 20696054 DOI: 10.1186/gb-2010-11-8-r82  0.72
2010 Morozova O, Vojvodic M, Grinshtein N, Hansford LM, Blakely KM, Maslova A, Hirst M, Cezard T, Morin RD, Moore R, Smith KM, Miller F, Taylor P, Thiessen N, Varhol R, ... ... Marra MA, et al. System-level analysis of neuroblastoma tumor-initiating cells implicates AURKB as a novel drug target for neuroblastoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 16: 4572-82. PMID 20651058 DOI: 10.1158/1078-0432.CCR-10-0627  0.72
2010 Goya R, Sun MG, Morin RD, Leung G, Ha G, Wiegand KC, Senz J, Crisan A, Marra MA, Hirst M, Huntsman D, Murphy KP, Aparicio S, Shah SP. SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors. Bioinformatics (Oxford, England). 26: 730-6. PMID 20130035 DOI: 10.1093/bioinformatics/btq040  0.72
2010 Morin RD, Johnson NA, Severson TM, Mungall AJ, An J, Goya R, Paul JE, Boyle M, Woolcock BW, Kuchenbauer F, Yap D, Humphries RK, Griffith OL, Shah S, Zhu H, ... ... Marra MA, et al. Somatic mutations altering EZH2 (Tyr641) in follicular and diffuse large B-cell lymphomas of germinal-center origin. Nature Genetics. 42: 181-5. PMID 20081860 DOI: 10.1038/ng.518  0.72
2010 Vrljicak P, Chang AC, Morozova O, Wederell ED, Niessen K, Marra MA, Karsan A, Hoodless PA. Genomic analysis distinguishes phases of early development of the mouse atrio-ventricular canal. Physiological Genomics. 40: 150-7. PMID 19952280 DOI: 10.1152/physiolgenomics.00142.2009  0.72
2009 Shah SP, Morin RD, Khattra J, Prentice L, Pugh T, Burleigh A, Delaney A, Gelmon K, Guliany R, Senz J, Steidl C, Holt RA, Jones S, Sun M, Leung G, ... ... Marra MA, et al. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. Nature. 461: 809-13. PMID 19812674 DOI: 10.1038/nature08489  0.72
2009 Morozova O, Hirst M, Marra MA. Applications of new sequencing technologies for transcriptome analysis. Annual Review of Genomics and Human Genetics. 10: 135-51. PMID 19715439 DOI: 10.1146/annurev-genom-082908-145957  0.72
2009 Meissner B, Warner A, Wong K, Dube N, Lorch A, McKay SJ, Khattra J, Rogalski T, Somasiri A, Chaudhry I, Fox RM, Miller DM, Baillie DL, Holt RA, Jones SJ, ... Marra MA, et al. An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. Plos Genetics. 5: e1000537. PMID 19557190 DOI: 10.1371/journal.pgen.1000537  0.72
2008 Kuchenbauer F, Morin RD, Argiropoulos B, Petriv OI, Griffith M, Heuser M, Yung E, Piper J, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Hansen CL, ... Marra MA, et al. In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Research. 18: 1787-97. PMID 18849523 DOI: 10.1101/gr.077578.108  0.72
2008 Morozova O, Morozov V, Hoffman BG, Helgason CD, Marra MA. A seriation approach for visualization-driven discovery of co-expression patterns in Serial Analysis of Gene Expression (SAGE) data Plos One. 3. PMID 18787709 DOI: 10.1371/journal.pone.0003205  0.72
2008 Morozova O, Marra MA. Applications of next-generation sequencing technologies in functional genomics Genomics. 92: 255-264. PMID 18703132 DOI: 10.1016/j.ygeno.2008.07.001  0.72
2008 Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ. Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags. Bmc Biology. 6: 30. PMID 18611272 DOI: 10.1186/1741-7007-6-30  0.36
2008 Morozova O, Marra MA. From cytogenetics to next-generation sequencing technologies: Advances in the detection of genome rearrangements in tumors Biochemistry and Cell Biology. 86: 81-91. PMID 18443621 DOI: 10.1139/O08-003  0.72
2008 Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Research. 18: 610-21. PMID 18285502 DOI: 10.1101/gr.7179508  0.6
2008 Griffith M, Tang MJ, Griffith OL, Morin RD, Chan SY, Asano JK, Zeng T, Flibotte S, Ally A, Baross A, Hirst M, Jones SJM, Morin GB, Tai IT, Marra MA. ALEXA: A microarray design platform for alternative expression analysis [3] Nature Methods. 5: 118. PMID 18235430 DOI: 10.1038/nmeth0208-118  0.72
2007 Hunt-Newbury R, Viveiros R, Johnsen R, Mah A, Anastas D, Fang L, Halfnight E, Lee D, Lin J, Lorch A, McKay S, Okada HM, Pan J, Schulz AK, Tu D, ... ... Marra MA, et al. High-throughput in vivo analysis of gene expression in Caenorhabditis elegans. Plos Biology. 5: e237. PMID 17850180 DOI: 10.1371/journal.pbio.0050237  0.72
2007 Huang P, Pleasance ED, Maydan JS, Hunt-Newbury R, O'Neil NJ, Mah A, Baillie DL, Marra MA, Moerman DG, Jones SJ. Identification and analysis of internal promoters in Caenorhabditis elegans operons. Genome Research. 17: 1478-85. PMID 17712020 DOI: 10.1101/gr.6824707  0.36
2007 Snelling WM, Chiu R, Schein JE, Hobbs M, Abbey CA, Adelson DL, Aerts J, Bennett GL, Bosdet IE, Boussaha M, Brauning R, Caetano AR, Costa MM, Crawford AM, Dalrymple BP, ... ... Marra MA, et al. A physical map of the bovine genome. Genome Biology. 8: R165. PMID 17697342 DOI: 10.1186/gb-2007-8-8-r165  0.72
2007 Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, ... ... Marra MA, et al. A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation. The Plant Journal : For Cell and Molecular Biology. 50: 1063-78. PMID 17488239 DOI: 10.1111/j.1365-313X.2007.03112.x  0.72
2007 McGhee JD, Sleumer MC, Bilenky M, Wong K, McKay SJ, Goszczynski B, Tian H, Krich ND, Khattra J, Holt RA, Baillie DL, Kohara Y, Marra MA, Jones SJ, Moerman DG, et al. The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine. Developmental Biology. 302: 627-45. PMID 17113066 DOI: 10.1016/j.ydbio.2006.10.024  0.72
2006 Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ. Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. Bmc Genomics. 7: 246. PMID 17010196 DOI: 10.1186/1471-2164-7-246  0.72
2006 Friedman JM, Baross A, Delaney AD, Ally A, Arbour L, Armstrong L, Asano J, Bailey DK, Barber S, Birch P, Brown-John M, Cao M, Chan S, Charest DL, Farnoud N, ... ... Marra MA, et al. Oligonucleotide microarray analysis of genomic imbalance in children with mental retardation. American Journal of Human Genetics. 79: 500-13. PMID 16909388 DOI: 10.1086/507471  0.72
2006 Morin RD, Chang E, Petrescu A, Liao N, Griffith M, Chow W, Kirkpatrick R, Butterfield YS, Young AC, Stott J, Barber S, Babakaiff R, Dickson MC, Matsuo C, Wong D, ... ... Marra MA, et al. Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling. Genome Research. 16: 796-803. PMID 16672307 DOI: 10.1101/gr.4871006  0.72
2005 Ng SH, Artieri CG, Bosdet IE, Chiu R, Danzmann RG, Davidson WS, Ferguson MM, Fjell CD, Hoyheim B, Jones SJ, de Jong PJ, Koop BF, Krzywinski MI, Lubieniecki K, Marra MA, et al. A physical map of the genome of Atlantic salmon, Salmo salar. Genomics. 86: 396-404. PMID 16026963 DOI: 10.1016/j.ygeno.2005.06.001  0.72
2005 Blacque OE, Perens EA, Boroevich KA, Inglis PN, Li C, Warner A, Khattra J, Holt RA, Ou G, Mah AK, McKay SJ, Huang P, Swoboda P, Jones SJ, Marra MA, et al. Functional genomics of the cilium, a sensory organelle. Current Biology : Cb. 15: 935-41. PMID 15916950 DOI: 10.1016/j.cub.2005.04.059  0.72
2005 Loftus BJ, Fung E, Roncaglia P, Rowley D, Amedeo P, Bruno D, Vamathevan J, Miranda M, Anderson IJ, Fraser JA, Allen JE, Bosdet IE, Brent MR, Chiu R, Doering TL, ... ... Marra MA, et al. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Science (New York, N.Y.). 307: 1321-4. PMID 15653466 DOI: 10.1126/science.1103773  0.72
2004 Hirst M, Astell CR, Griffith M, Coughlin SM, Moksa M, Zeng T, Smailus DE, Holt RA, Jones S, Marra MA, Petric M, Krajden M, Lawrence D, Mak A, Chow R, et al. Novel avian influenza H7N3 strain outbreak, British Columbia. Emerging Infectious Diseases. 10: 2192-5. PMID 15663859 DOI: 10.3201/eid1012.040743  0.72
2004 Baross A, Butterfield YS, Coughlin SM, Zeng T, Griffith M, Griffith OL, Petrescu AS, Smailus DE, Khattra J, McDonald HL, McKay SJ, Moksa M, Holt RA, Marra MA. Systematic recovery and analysis of full-ORF human cDNA clones. Genome Research. 14: 2083-92. PMID 15489330 DOI: 10.1101/gr.2473704  0.72
2003 Fjell CD, Bosdet I, Schein JE, Jones SJ, Marra MA. Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps. Genome Research. 13: 1244-9. PMID 12799356 DOI: 10.1101/gr.819303  0.36
2003 Fuhrmann DR, Krzywinski MI, Chiu R, Saeedi P, Schein JE, Bosdet IE, Chinwalla A, Hillier LW, Waterston RH, McPherson JD, Jones SJM, Marra MA. Software for automated analysis of DNA fingerprinting gels Genome Research. 13: 940-953. PMID 12727910 DOI: 10.1101/gr.904303  0.72
2002 Schein JE, Tangen KL, Chiu R, Shin H, Lengeler KB, MacDonald WK, Bosdet I, Heitman J, Jones SJ, Marra MA, Kronstad JW. Physical maps for genome analysis of serotype A and D strains of the fungal pathogen Cryptococcus neoformans. Genome Research. 12: 1445-53. PMID 12213782 DOI: 10.1101/gr.81002  0.72
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