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Victor Llaca - Publications

Affiliations: 
Plant Sciences University of California, Davis, Davis, CA 
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Ryazansky SS, Chen C, Potters M, Naumenko AN, Lukyanchikova V, Masri RA, Brusentsov II, Karagodin DA, Yurchenko AA, Dos Anjos VL, Haba Y, Rose NH, Hoffman J, Guo R, Menna T, ... ... Llaca V, et al. The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes. Bmc Biology. 22: 16. PMID 38273363 DOI: 10.1186/s12915-024-01825-0  0.451
2023 Cameron P, Fuller CK, Donohoue PD, Jones BN, Thompson MS, Carter MM, Gradia S, Vidal B, Garner E, Slorach EM, Lau E, Banh LM, Lied AM, Edwards LS, Settle AH, ... ... Llaca V, et al. Author Correction: Mapping the genomic landscape of CRISPR-Cas9 cleavage. Nature Methods. PMID 37945910 DOI: 10.1038/s41592-023-02114-4  0.446
2023 Garg V, Khan AW, Fengler K, Llaca V, Yuan Y, Vuong TD, Harris C, Chan TF, Lam HM, Varshney RK, Nguyen HT. Near-gapless genome assemblies of Williams 82 and Lee cultivars for accelerating global soybean research. The Plant Genome. e20382. PMID 37749941 DOI: 10.1002/tpg2.20382  0.504
2023 Ramu P, Srivastava RK, Sanyal A, Fengler K, Cao J, Zhang Y, Nimkar M, Gerke J, Shreedharan S, Llaca V, May G, Peterson-Burch B, Lin H, King M, Das S, et al. Improved pearl millet genomes representing the global heterotic pool offer a framework for molecular breeding applications. Communications Biology. 6: 902. PMID 37667032 DOI: 10.1038/s42003-023-05258-3  0.559
2023 Meisel RP, Freeman JC, Asgari D, Llaca V, Fengler KA, Mann D, Rastogi A, Loso M, Geng C, Scott JG. New insights into immune genes and other expanded gene families of the house fly, Musca domestica, from an improved whole genome sequence. Archives of Insect Biochemistry and Physiology. e22049. PMID 37608635 DOI: 10.1002/arch.22049  0.494
2023 Ranawaka B, An J, Lorenc MT, Jung H, Sulli M, Aprea G, Roden S, Llaca V, Hayashi S, Asadyar L, LeBlanc Z, Ahmed Z, Naim F, de Campos SB, Cooper T, et al. A multi-omic Nicotiana benthamiana resource for fundamental research and biotechnology. Nature Plants. PMID 37563457 DOI: 10.1038/s41477-023-01489-8  0.51
2023 Phillips AR, Seetharam AS, Albert PS, AuBuchon-Elder T, Birchler JA, Buckler ES, Gillespie LJ, Hufford MB, Llaca V, Romay MC, Soreng RJ, Kellogg EA, Ross-Ibarra J. A happy accident: a novel turfgrass reference genome. G3 (Bethesda, Md.). PMID 37002915 DOI: 10.1093/g3journal/jkad073  0.675
2023 Zhou Y, Yu Z, Chebotarov D, Chougule K, Lu Z, Rivera LF, Kathiresan N, Al-Bader N, Mohammed N, Alsantely A, Mussurova S, Santos J, Thimma M, Troukhan M, Fornasiero A, ... ... Llaca V, et al. Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice. Nature Communications. 14: 1567. PMID 36944612 DOI: 10.1038/s41467-023-37004-y  0.456
2023 Thatcher S, Jung M, Panangipalli G, Fengler K, Sanyal A, Li B, Llaca V, Habben J. The NLRomes of Zea mays NAM founder lines and Zea luxurians display presence-absence variation, integrated domain diversity, and mobility. Molecular Plant Pathology. PMID 36929631 DOI: 10.1111/mpp.13319  0.342
2023 Zuccolo A, Mfarrej S, Celii M, Mussurova S, Rivera LF, Llaca V, Mohammed N, Pain A, Alrefaei AF, Alrefaei AF, Wing RA. The gyrfalcon (Falcon rusticolus) genome. G3 (Bethesda, Md.). PMID 36611193 DOI: 10.1093/g3journal/jkad001  0.549
2022 Rabanal FA, Gräff M, Lanz C, Fritschi K, Llaca V, Lang M, Carbonell-Bejerano P, Henderson I, Weigel D. Pushing the limits of HiFi assemblies reveals centromere diversity between two Arabidopsis thaliana genomes. Nucleic Acids Research. 50: 12309-12327. PMID 36453992 DOI: 10.1093/nar/gkac1115  0.464
2022 Parker TA, Cetz J, de Sousa LL, Kuzay S, Lo S, de Oliveira Floriani T, Njau S, Arunga E, Duitama J, Jernstedt J, Myers JR, Llaca V, Herrera-Estrella A, Gepts P. Loss of pod strings in common bean is associated with gene duplication, retrotransposon insertion, and overexpression of PvIND. The New Phytologist. PMID 35708662 DOI: 10.1111/nph.18319  0.611
2021 Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, ... ... Llaca V, et al. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science (New York, N.Y.). 373: 655-662. PMID 34353948 DOI: 10.1126/science.abg5289  0.679
2020 Compton A, Liang J, Chen C, Lukyanchikova V, Qi Y, Potters M, Settlage R, Miller D, Deschamps S, Mao C, Llaca V, Sharakhov IV, Tu Z. The Beginning of the End: A Chromosomal Assembly of the New World Malaria Mosquito Ends with a Novel Telomere. G3 (Bethesda, Md.). PMID 32883756 DOI: 10.1534/G3.120.401654  0.457
2020 Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, et al. Gapless assembly of maize chromosomes using long-read technologies. Genome Biology. 21: 121. PMID 32434565 DOI: 10.1186/S13059-020-02029-9  0.656
2020 Ou S, Liu J, Chougule KM, Fungtammasan A, Seetharam AS, Stein JC, Llaca V, Manchanda N, Gilbert AM, Wei S, Chin CS, Hufnagel DE, Pedersen S, Snodgrass SJ, Fengler K, et al. Effect of sequence depth and length in long-read assembly of the maize inbred NC358. Nature Communications. 11: 2288. PMID 32385271 DOI: 10.1038/S41467-020-16037-7  0.66
2020 Zhou Y, Chebotarov D, Kudrna D, Llaca V, Lee S, Rajasekar S, Mohammed N, Al-Bader N, Sobel-Sorenson C, Parakkal P, Arbelaez LJ, Franco N, Alexandrov N, Hamilton NRS, Leung H, et al. A platinum standard pan-genome resource that represents the population structure of Asian rice. Scientific Data. 7: 113. PMID 32265447 DOI: 10.1038/S41597-020-0438-2  0.462
2018 Deschamps S, Zhang Y, Llaca V, Ye L, Sanyal A, King M, May G, Lin H. A chromosome-scale assembly of the sorghum genome using nanopore sequencing and optical mapping. Nature Communications. 9: 4844. PMID 30451840 DOI: 10.1038/S41467-018-07271-1  0.557
2017 Cameron P, Fuller CK, Donohoue PD, Jones BN, Thompson MS, Carter MM, Gradia S, Vidal B, Garner E, Slorach EM, Lau E, Banh LM, Lied AM, Edwards LS, Settle AH, ... ... Llaca V, et al. Mapping the genomic landscape of CRISPR-Cas9 cleavage. Nature Methods. PMID 28459459 DOI: 10.1038/Nmeth.4284  0.321
2016 Deschamps S, Mudge J, Cameron C, Ramaraj T, Anand A, Fengler K, Hayes K, Llaca V, Jones TJ, May G. Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens. Scientific Reports. 6: 28625. PMID 27350167 DOI: 10.1038/Srep28625  0.432
2015 Burns FR, Cogburn AL, Ankley GT, Villeneuve DL, Waits E, Chang YJ, Llaca V, Deschamps SD, Jackson RE, Hoke RA. Sequencing and de novo draft assemblies of a fathead minnow (Pimephales promelas) reference genome. Environmental Toxicology and Chemistry / Setac. PMID 26513338 DOI: 10.1002/Etc.3186  0.528
2013 Llaca V, Delgado Salinas A, Gepts P. Chloroplast DNA as an evolutionary marker in thePhaseolus vulgaris complex. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 88: 646-52. PMID 24186158 DOI: 10.1007/Bf01253966  0.62
2012 Deschamps S, Llaca V, May GD. Genotyping-by-Sequencing in Plants. Biology. 1: 460-83. PMID 24832503 DOI: 10.3390/Biology1030460  0.413
2012 Llaca V, Gepts P. Pulsed-field gel electrophoresis analysis of the phaseolin locus region in Phaseolus vulgaris. Genome. 39: 722-9. PMID 18469932 DOI: 10.1139/G96-091  0.588
2011 Llaca V, Campbell MA, Deschamps S. Genome Diversity in Maize Journal of Botany. 2011: 1-10. DOI: 10.1155/2011/104172  0.528
2010 Deschamps S, la Rota M, Ratashak JP, Biddle P, Thureen D, Farmer A, Luck S, Beatty M, Nagasawa N, Michael L, Llaca V, Sakai H, May G, Lightner J, Campbell MA. Rapid Genome-wide Single Nucleotide Polymorphism Discovery in Soybean and Rice via Deep Resequencing of Reduced Representation Libraries with the Illumina Genome Analyzer The Plant Genome. 3: 53-68. DOI: 10.3835/Plantgenome2009.09.0026  0.489
2007 Chanock SJ, Burdett L, Yeager M, Llaca V, Langerød A, Presswalla S, Kaaresen R, Strausberg RL, Gerhard DS, Kristensen V, Perou CM, Børresen-Dale AL. Somatic sequence alterations in twenty-one genes selected by expression profile analysis of breast carcinomas. Breast Cancer Research : Bcr. 9: R5. PMID 17224074 DOI: 10.1186/Bcr1637  0.317
2004 Swigonova Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen JL, Messing J. On the tetraploid origin of the maize genome. Comparative and Functional Genomics. 5: 281-4. PMID 18629160 DOI: 10.1002/Cfg.395  0.521
2004 Lai J, Ma J, Swigonová Z, Ramakrishna W, Linton E, Llaca V, Tanyolac B, Park YJ, Jeong OY, Bennetzen JL, Messing J. Gene loss and movement in the maize genome. Genome Research. 14: 1924-31. PMID 15466290 DOI: 10.1101/Gr.2701104  0.324
2004 Swigonová Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen JL, Messing J. Close split of sorghum and maize genome progenitors. Genome Research. 14: 1916-23. PMID 15466289 DOI: 10.1101/Gr.2332504  0.521
2002 Song R, Llaca V, Messing J. Mosaic organization of orthologous sequences in grass genomes. Genome Research. 12: 1549-55. PMID 12368247 DOI: 10.1101/Gr.268302  0.488
1998 Llaca V, Messing J. Amplicons of maize zein genes are conserved within genic but expanded and constricted in intergenic regions. The Plant Journal : For Cell and Molecular Biology. 15: 211-20. PMID 9721679 DOI: 10.1046/J.1365-313X.1998.00200.X  0.379
1998 Messing J, Llaca V. Importance of anchor genomes for any plant genome project. Proceedings of the National Academy of Sciences of the United States of America. 95: 2017-20. PMID 9482827 DOI: 10.1073/Pnas.95.5.2017  0.504
1998 Freyre R, Skroch PW, Geffroy V, Adam-Blondon A, Shirmohamadali A, Johnson WC, Llaca V, Nodari RO, Pereira PA, Tsai S, Tohme J, Dron M, Nienhuis J, Vallejos CE, Gepts P. Towards an integrated linkage map of common bean. 4. Development of a core linkage map and alignment of RFLP maps Theoretical and Applied Genetics. 97: 847-856. DOI: 10.1007/S001220050964  0.506
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