Cymon J. Cox - Publications

CCMar, Faro, Faro, Portugal 
Phylogeny, Botanics

107 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Williams TA, Schrempf D, Szöllősi GJ, Cox CJ, Foster PG, Embley TM. Inferring the deep past from molecular data. Genome Biology and Evolution. PMID 33772552 DOI: 10.1093/gbe/evab067  1
2020 Williams TA, Cox CJ, Foster PG, Szöllősi GJ, Embley TM. Author Correction: Phylogenomics provides robust support for a two-domains tree of life. Nature Ecology & Evolution. PMID 33077932 DOI: 10.1038/s41559-020-01347-2  1
2020 Ge F, Gao L, Peng X, Li Q, Zhu Y, Yu J, Wang Z. Atmospheric pressure glow discharge optical emission spectrometry coupled with laser ablation for direct solid quantitative determination of Zn, Pb, and Cd in soils. Talanta. 218: 121119. PMID 32797877 DOI: 10.1016/J.Talanta.2020.121119  0.36
2020 Yuan F, Wu X, Zhang H. Luminescence of Eu (III) complex under near-infrared light excitation for curcumin detection. Talanta. 218: 121104. PMID 32797870 DOI: 10.1016/j.talanta.2020.121104  0.32
2020 Zhang Y, Huang Y. Applicability of the low-dissipation model: Carnot-like heat engines under Newton's law of cooling. Physical Review. E. 102: 012151. PMID 32794970 DOI: 10.1103/PhysRevE.102.012151  0.32
2020 Zou W, Wang J. Dynamics of the generalized Kuramoto model with nonlinear coupling: Bifurcation and stability. Physical Review. E. 102: 012219. PMID 32794968 DOI: 10.1103/PhysRevE.102.012219  0.6
2020 Wan Z, Zhao B, Zhang X, Zhao Y. Drug discovery in cardiovascular disease identified by text mining and data analysis. Annals of Palliative Medicine. PMID 32787365 DOI: 10.21037/apm-20-705  0.32
2020 Wan Y, Zhang X, Leng H, Yin W, Zeng W, Zhang C. Identifying hub genes of papillary thyroid carcinoma in the TCGA and GEO database using bioinformatics analysis. Peerj. 8: e9120. PMID 32714651 DOI: 10.7717/peerj.9120  0.32
2020 Wang J, Perez-Cruet JM, Huang HL, Reiss K, Gisriel CJ, Banerjee G, Kaur D, Ghosh I, Dziarski A, Gunner MR, Batista VS, Brudvig GW. Identification of a Na+-Binding Site Near the Oxygen-Evolving Complex of Spinach Photosystem II. Biochemistry. PMID 32650633 DOI: 10.1021/Acs.Biochem.0C00303  0.52
2020 Du Z, Sun Y, Wang J, Liu H, Yang Y, Zhao N. Comprehensive RNA-Seq profiling of the lung transcriptome of Bashbay sheep in response to experimental Mycoplasma ovipneumoniae infection. Plos One. 15: e0214497. PMID 32639963 DOI: 10.1371/journal.pone.0214497  0.32
2020 Liao DX, Shan HM, Zhang JX, Peng SX, Huang J, Chen H, Zhao CR, Zeng CY. [Characteristics and Influencing Factors of Monothioarsenate Adsorption on Goethite]. Huan Jing Ke Xue= Huanjing Kexue. 41: 3337-3344. PMID 32608907 DOI: 10.13227/j.hjkx.202001132  0.32
2020 Zhong X, Diao W, Zhao C, Jia Z. Fluorodeoxyglucose-avid focal lesions and extramedullary disease on 18F-FDG PET/computed tomography predict the outcomes of newly diagnosed symptomatic multiple myeloma patients. Nuclear Medicine Communications. PMID 32590550 DOI: 10.1097/MNM.0000000000001242  0.32
2020 Sebai M, Wang X, Wang T. MaskMitosis: a deep learning framework for fully supervised, weakly supervised, and unsupervised mitosis detection in histopathology images. Medical & Biological Engineering & Computing. PMID 32445109 DOI: 10.1007/s11517-020-02175-z  0.6
2020 Zhang L, Wang Z, Kong D, Zhao X, Chen X, Chai W. Knockdown of interferon-induced transmembrane protein 1 inhibited proliferation, induced cell cycle arrest and apoptosis, and suppressed MAPK signaling pathway in pancreatic cancer cells. Bioscience, Biotechnology, and Biochemistry. 1-11. PMID 32434425 DOI: 10.1080/09168451.2020.1762479  0.52
2020 Xu H, Meng X, Jia L, Wei Y, Sun B, Liang M. Tissue distribution of transcription for 29 lipid metabolism-related genes in Takifugu rubripes, a marine teleost storing lipid predominantly in liver. Fish Physiology and Biochemistry. PMID 32415410 DOI: 10.1007/s10695-020-00815-7  0.36
2020 Sousa F, Civáň P, Brazão J, Foster PG, Cox CJ. The mitochondrial phylogeny of land plants shows support for Setaphyta under composition-heterogeneous substitution models. Peerj. 8: e8995. PMID 32377448 DOI: 10.7717/Peerj.8995  1
2020 Wang J, Shao L, Wu L, Ma W, Zheng Y, Hu C, Li F. Expression levels of a gene signature in hiPSC associated with lung adenocarcinoma stem cells and its capability in eliciting specific antitumor immune-response in a humanized mice model. Thoracic Cancer. PMID 32314522 DOI: 10.1111/1759-7714.13440  0.4
2020 Zhang L, Bi S, Du L, Gong J, Chen J, Sun W, Shen X, Tang J, Ren L, Chai G, Wang Z, Chen D. Effect of previous placenta previa on outcome of next pregnancy: a 10-year retrospective cohort study. Bmc Pregnancy and Childbirth. 20: 212. PMID 32293318 DOI: 10.1186/s12884-020-02890-3  0.44
2020 Li W, Wang D, Zhang H, Zhang Y, Zheng W, Xue X, Shen W, Sitas F, Jiang G. The methodology for assessing smoking-attributed mortality based on All Causes of Death Surveillance in Tianjin, China, 2010-2015. Tobacco Induced Diseases. 18: 21. PMID 32265615 DOI: 10.18332/tid/116970  0.4
2020 Yang J, Yang J, Wang H, Wang J, Xiong J, Qiao C, Ran C. An atom-economical design of PET tracer for imaging αβ integrin via utilizing the three-in-one function of Copper. Chemical Communications (Cambridge, England). PMID 31960841 DOI: 10.1039/c9cc08690k  0.36
2020 Han Y, Xing Z, Ma P, Li S, Wang C, Jiang Z, Chen Z. Design Rules for Improving the Cycling Stability of High-Performance Donor-Acceptor-Type Electrochromic Polymers. Acs Applied Materials & Interfaces. PMID 31957425 DOI: 10.1021/acsami.9b19214  0.36
2019 Yang Y, Zhang X, Chen D, Liu L, Hao L. Adolescent non-gestational ovarian choriocarcinoma: report of a case and review of literature. International Journal of Clinical and Experimental Pathology. 12: 1788-1794. PMID 31933999  0.52
2019 Shi X, Jiang D, Huang Y, Wang X, Chen Q, Yan J, Tang B. Family history information extraction via deep joint learning. Bmc Medical Informatics and Decision Making. 19: 277. PMID 31881967 DOI: 10.1186/s12911-019-0995-5  0.4
2019 Williams TA, Cox CJ, Foster PG, Szöllősi GJ, Embley TM. Phylogenomics provides robust support for a two-domains tree of life. Nature Ecology & Evolution. PMID 31819234 DOI: 10.1038/S41559-019-1040-X  1
2019 Ma X, Niu Y, Wu Y, Wang C, Wang T, Jiang J. [Preliminary estimating the burden of foodborne acute gastrointestinal illness in Beijing City]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 48: 589-593. PMID 31601340  0.44
2019 Cao PC, Liu WW, Liu GJ, Zhai JT, Ji XP, Dai YW. Steganographic coding scheme based on dither convolutional trellis under resampling mechanism. Mathematical Biosciences and Engineering : Mbe. 16: 6015-6033. PMID 31499750 DOI: 10.3934/mbe.2019301  0.36
2019 Ren K, Cheng Y, Huang C, Chen R, Wang Z, Wei J. Self-healing conductive hydrogels based on alginate, gelatin and polypyrrole serve as a repairable circuit and a mechanical sensor. Journal of Materials Chemistry. B. PMID 31482926 DOI: 10.1039/c9tb01214a  0.36
2019 Zhou J, Wang K, Wu G, Sun X. Letter to the Editor on "Adductor Canal Block or Local Infiltrate Analgesia for Pain Control After Total Knee Arthroplasty? A Systematic Review and Meta-Analysis of Randomized Controlled Trials". The Journal of Arthroplasty. PMID 31447257 DOI: 10.1016/j.arth.2019.07.036  0.36
2019 Cui L, Wang C, Zhang H, Ma Y, Deng G, Zhou Z, Lin J, Yang H, Yang S. Facile one-step dialysis strategy for fabrication of hollow complex nanoparticles. Chemical Communications (Cambridge, England). PMID 31298667 DOI: 10.1039/c9cc04618f  0.36
2019 Li F, Yang X, Zhang Y, Luo W, Gan W. Passive ocean acoustic tomography in shallow water. The Journal of the Acoustical Society of America. 145: 2823. PMID 31153298 DOI: 10.1121/1.5099350  0.32
2019 Pan JL, Liu C, Chen C, Liu TQ, Wang M, Sun Z, Zhang SY. Dual Directing-Groups-Assisted Redox-Neutral Annulation and Ring Opening of N-Aryloxyacetamides with 1-Alkynylcyclobutanols via Rhodium(III)-Catalyzed C-H/C-C Activations. Organic Letters. PMID 30916570 DOI: 10.1021/acs.orglett.9b00812  0.32
2019 Shen Y, Zhang W, Shen Y. Early diuretic use and mortality in critically ill patients with vasopressor support: a propensity score-matching analysis. Critical Care (London, England). 23: 9. PMID 30630521 DOI: 10.1186/s13054-019-2309-9  0.32
2018 Manoharan M, Mandloi N, Priyadarshini S, Patil A, Gupta R, Iyer L, Gupta R, Chaudhuri A. A Computational Approach Identifies Immunogenic Features of Prognosis in Human Cancers. Frontiers in Immunology. 9: 3017. PMID 30622534 DOI: 10.3389/fimmu.2018.03017  0.32
2018 Wang X, Shi N, Shi H, Ye H, Li N, Sun P, Bai D, Yuan H. Correlations of Acute Cerebral Hemorrhage Complicated with Stress Ulcer Bleeding with Acute Physiology and Chronic Health Evaluation (APACHE) II Score, Endothelin (ET), Tumor Necrosis Factor-alpha (TNF-α), and Blood Lipids. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 24: 9120-9126. PMID 30554231 DOI: 10.12659/MSM.911915  0.32
2018 de Sousa F, Foster PG, Donoghue PCJ, Schneider H, Cox CJ. Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.). The New Phytologist. PMID 30411803 DOI: 10.1111/Nph.15587  1
2018 Wang X, Ren M, Li Y, Hu J, Lu G, Ma W, Guo D, Lu X, He S. Long noncoding RNA NNT-AS1 promotes gastric cancer proliferation and invasion by regulating microRNA-363 expression. Journal of Cellular Biochemistry. PMID 30324628 DOI: 10.1002/jcb.27855  0.32
2018 Qian P, Yan Z, Zhou Z, Hu K, Wang J, Li Z, Zha Z, Wang Z. Electrocatalytic Intermolecular C(sp)-H/N-H Coupling of Methyl N-Heteroaromatics with Amines and Amino Acids: Access to Imidazo-Fused N-Heterocycles. Organic Letters. PMID 30280901 DOI: 10.1021/acs.orglett.8b02578  0.36
2018 Qiao N. Using Deep Learning for the Classification of Images Generated by Multifocal Visual Evoked Potential. Frontiers in Neurology. 9: 638. PMID 30123181 DOI: 10.3389/fneur.2018.00638  0.48
2018 Bian A, Wang Y, Liu J, Wang X, Liu D, Jiang J, Ding L, Hui X. Circular RNA Complement Factor H (CFH) Promotes Glioma Progression by Sponging miR-149 and Regulating AKT1. Medical Science Monitor : International Medical Journal of Experimental and Clinical Research. 24: 5704-5712. PMID 30111766 DOI: 10.12659/MSM.910180  0.32
2018 Puttick MN, Morris JL, Williams TA, Cox CJ, Edwards D, Kenrick P, Pressel S, Wellman CH, Schneider H, Pisani D, Donoghue PCJ. The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte. Current Biology : Cb. PMID 29456145 DOI: 10.1016/J.Cub.2018.01.063  0.44
2017 Wang C, Zhang M, Li W, Huang X, Li S, Luan S, Hou X, Wang Q. Investigation on the function of nonionic surfactants during compressed CO2-mediated periodic mesoporous organosilica formation. Soft Matter. PMID 28748980 DOI: 10.1039/c7sm01134b  0.32
2017 Cai YR, Hu CH. Computational Study of H2S Release in Reactions of Diallyl Polysulfides with Thiols. The Journal of Physical Chemistry. B. PMID 28609097 DOI: 10.1021/acs.jpcb.7b03683  0.32
2017 Tang L, Zhao Z, Zhou Y, Lv B, Li P, Ye J, Wang X, Xiao M, Zou Z. Series of ZnSn(OH)6 Polyhedra: Enhanced CO2 Dissociation Activation and Crystal Facet-Based Homojunction Boosting Solar Fuel Synthesis. Inorganic Chemistry. PMID 28437076 DOI: 10.1021/acs.inorgchem.7b00219  0.36
2016 Liang ZB, Sun YC, Li JH, Wang ZB, Xje ZL, Zhang M, Liao Y, Jiang ZL. [Sources and Variation Characteristics of Dissolved Lipid Biomarkers in a Typical Karst Underground River]. Huan Jing Ke Xue= Huanjing Kexue / [Bian Ji, Zhongguo Ke Xue Yuan Huan Jing Ke Xue Wei Yuan Hui "Huan Jing Ke Xue" Bian Ji Wei Yuan Hui.]. 37: 1814-22. PMID 27506035  0.36
2016 Jonathan Shaw A, Devos N, Liu Y, Cox CJ, Goffinet B, Flatberg KI, Shaw B. Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss). Annals of Botany. PMID 27268484 DOI: 10.1093/Aob/Mcw086  1
2016 Civán P, Craig H, Cox CJ, Brown TA. Multiple domestications of Asian rice. Nature Plants. 2: 16037. PMID 27249567 DOI: 10.1038/Nplants.2016.37  1
2016 Rathore OS, Faustino A, Prudêncio P, Van Damme P, Cox CJ, Martinho RG. Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms. Scientific Reports. 6: 21304. PMID 26861501 DOI: 10.1038/Srep21304  1
2016 Laenen B, Machac A, Gradstein SR, Shaw B, Patiño J, Désamoré A, Goffinet B, Cox CJ, Shaw J, Vanderpoorten A. Geographical range in liverworts: Does sex really matter? Journal of Biogeography. 43: 627-635. DOI: 10.1111/Jbi.12661  1
2015 Civáň P, Craig H, Cox CJ, Brown TA. Three geographically separate domestications of Asian rice. Nature Plants. 1: 15164. PMID 27251535 DOI: 10.1038/Nplants.2015.164  0.64
2015 Chen HP, Jiang JK, Lai PY, Teo WH, Yang CY, Chou TY, Lin CH, Chan YJ. The serologic and viraemic status of human cytomegalovirus infection in patients with colorectal cancer is not correlated with viral replication and transcription in tumours. The Journal of General Virology. PMID 26474568 DOI: 10.1099/jgv.0.000315  0.4
2015 Pearson GA, Lago-Leston A, Cánovas F, Cox CJ, Verret F, Lasternas S, Duarte CM, Agusti S, Serrão EA. Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. The Isme Journal. PMID 25871931 DOI: 10.1038/Ismej.2015.40  1
2015 Ramos AA, Weydmann A, Cox CJ, Canário AV, Serrão EA, Pearson GA. A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures. Marine Genomics. PMID 25863290 DOI: 10.1016/J.Margen.2015.03.014  1
2015 Civán P, Craig H, Cox CJ, Brown TA. Three geographically separate domestications of Asian rice Nature Plants. 1. DOI: 10.1038/nplants.2015.164  1
2014 Laenen B, Shaw B, Schneider H, Goffinet B, Paradis E, Désamoré A, Heinrichs J, Villarreal JC, Gradstein SR, McDaniel SF, Long DG, Forrest LL, Hollingsworth ML, Crandall-Stotler B, Davis EC, ... ... Cox CJ, et al. Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts. Nature Communications. 5: 5134. PMID 25346115 DOI: 10.1038/Ncomms6134  1
2014 Liu Y, Cox CJ, Wang W, Goffinet B. Mitochondrial phylogenomics of early land plants: Mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias Systematic Biology. 63: 862-878. PMID 25070972 DOI: 10.1093/Sysbio/Syu049  1
2014 Li B, Lopes JS, Foster PG, Embley TM, Cox CJ. Compositional biases among synonymous substitutions cause conflict between gene and protein trees for plastid origins. Molecular Biology and Evolution. 31: 1697-709. PMID 24795089 DOI: 10.1093/Molbev/Msu105  1
2014 Civaň P, Foster PG, Embley MT, Séneca A, Cox CJ. Analyses of charophyte chloroplast genomes help characterize the ancestral chloroplast genome of land plants. Genome Biology and Evolution. 6: 897-911. PMID 24682153 DOI: 10.1093/Gbe/Evu061  1
2014 Cox CJ, Li B, Foster PG, Embley TM, Civán P. Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions. Systematic Biology. 63: 272-9. PMID 24399481 DOI: 10.1093/Sysbio/Syt109  1
2014 Silva IAL, Cox CJ, Leite RB, Cancela ML, Conceição N. Evolutionary conservation of TFIIH subunits: Implications for the use of zebrafish as a model to study TFIIH function and regulation Comparative Biochemistry and Physiology Part - B: Biochemistry and Molecular Biology. 172: 9-20. DOI: 10.1016/j.cbpb.2014.03.007  1
2013 Williams TA, Foster PG, Cox CJ, Embley TM. An archaeal origin of eukaryotes supports only two primary domains of life. Nature. 504: 231-6. PMID 24336283 DOI: 10.1038/Nature12779  1
2013 Hardoim CC, Cox CJ, Peixoto RS, Rosado AS, Costa R, van Elsas JD. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva. Brazilian Journal of Microbiology : [Publication of the Brazilian Society For Microbiology]. 44: 329-34. PMID 24159324 DOI: 10.1590/S1517-83822013000100048  1
2013 Cox CJ, Foster PG. A 20-state empirical amino-acid substitution model for green plant chloroplasts. Molecular Phylogenetics and Evolution. 68: 218-20. PMID 23567023 DOI: 10.1016/J.Ympev.2013.03.030  1
2012 Hardoim CCP, Esteves AIS, Pires FR, Gonçalves JMS, Cox CJ, Xavier JR, Costa R. Phylogenetically and Spatially Close Marine Sponges Harbour Divergent Bacterial Communities Plos One. 7. PMID 23300853 DOI: 10.1371/Journal.Pone.0053029  1
2012 Williams TA, Foster PG, Nye TM, Cox CJ, Embley TM. A congruent phylogenomic signal places eukaryotes within the Archaea. Proceedings. Biological Sciences / the Royal Society. 279: 4870-9. PMID 23097517 DOI: 10.1098/Rspb.2012.1795  1
2012 Huttunen S, Bell N, Bobrova VK, Buchbender V, Buck WR, Cox CJ, Goffinet B, Hedenäs L, Ho BC, Ignatov MS, Krug M, Kuznetsova O, Milyutina IA, Newton A, Olsson S, et al. Disentangling knots of rapid evolution: Origin and diversification of the moss order Hypnales Journal of Bryology. 34: 187-211. DOI: 10.1179/1743282012Y.0000000013  1
2011 Forrest LL, Wickett NJ, Cox CJ, Goffinet B. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure Plant Ecology and Evolution. 144: 29-43. DOI: 10.5091/Plecevo.2011.535  1
2010 Shaw AJ, Cox CJ, Buck WR, Devos N, Buchanan AM, Cave L, Seppelt R, Shaw B, Larraín J, Andrus R, Greilhuber J, Temsch EM. Newly resolved relationships in an early land plant lineage: Bryophyta class Sphagnopsida (peat mosses). American Journal of Botany. 97: 1511-31. PMID 21616905 DOI: 10.3732/Ajb.1000055  1
2010 Shaw AJ, Devos N, Cox CJ, Boles SB, Shaw B, Buchanan AM, Cave L, Seppelt R. Peatmoss (Sphagnum) diversification associated with Miocene Northern Hemisphere climatic cooling? Molecular Phylogenetics and Evolution. 55: 1139-45. PMID 20102745 DOI: 10.1016/J.Ympev.2010.01.020  1
2010 Conceição N, Cox CJ, Simões B, Viegas M, Cancela ML. Comparative promoter analysis and its application to the identification of candidate regulatory factors of cartilage-expressed genes Journal of Applied Ichthyology. 26: 245-250. DOI: 10.1111/J.1439-0426.2010.01415.X  1
2009 Foster PG, Cox CJ, Embley TM. The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2197-207. PMID 19571240 DOI: 10.1098/Rstb.2009.0034  1
2009 Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics (Oxford, England). 25: 1422-3. PMID 19304878 DOI: 10.1093/Bioinformatics/Btp163  1
2009 Waeschenbach A, Cox CJ, Littlewood DTJ, Porter JS, Taylor PD. First molecular estimate of cyclostome bryozoan phylogeny confirms extensive homoplasy among skeletal characters used in traditional taxonomy Molecular Phylogenetics and Evolution. 52: 241-251. PMID 19236933 DOI: 10.1016/J.Ympev.2009.02.002  1
2008 Cox CJ, Foster PG, Hirt RP, Harris SR, Embley TM. The archaebacterial origin of eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 105: 20356-61. PMID 19073919 DOI: 10.1073/Pnas.0810647105  1
2008 Shaw AJ, Holz I, Cox CJ, Goffinet B. Phylogeny, character evolution, and biogeography of the gondwanic moss family Hypopterygiaceae (Bryophyta) Systematic Botany. 33: 21-30. DOI: 10.1600/036364408783887311  1
2007 Kauff F, Cox CJ, Lutzoni F. WASABI: an automated sequence processing system for multigene phylogenies. Systematic Biology. 56: 523-31. PMID 17562476 DOI: 10.1080/10635150701395340  1
2007 Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ. Distribution and phylogenetic significance of the 71-kb inversion in the plastid genome in Funariidae (Bryophyta). Annals of Botany. 99: 747-53. PMID 17337480 DOI: 10.1093/Aob/Mcm010  1
2006 James TY, Kauff F, Schoch CL, Matheny PB, Hofstetter V, Cox CJ, Celio G, Gueidan C, Fraker E, Miadlikowska J, Lumbsch HT, Rauhut A, Reeb V, Arnold AE, Amtoft A, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 443: 818-22. PMID 17051209 DOI: 10.1038/Nature05110  1
2005 Shaw AJ, Cox CJ. Variation in "biodiversity value" of peatmoss species in Sphagnum section Acutifolia (Sphagnaceae). American Journal of Botany. 92: 1774-83. PMID 21646095 DOI: 10.3732/Ajb.92.11.1774  1
2005 Goffinet B, Wickett NJ, Shaw AJ, Cox CJ. Phylogenetic significance of the rpoA loss in the chloroplast genome of mosses Taxon. 54: 353-360. DOI: 10.2307/25065363  1
2005 Shaw AJ, Cox CJ, Goffinet B. Global patterns of moss diversity: Taxonomic and molecular inferences Taxon. 54: 337-352. DOI: 10.2307/25065362  1
2005 Shaw AJ, Melosik I, Cox CJ, Boles SB. Divergent and reticulate evolution in closely related species of Sphagnum section Subsecunda Bryologist. 108: 363-376. DOI: 10.1639/0007-2745(2005)108[0363:Dareic]2.0.Co;2  1
2005 Shaw AJ, Cox CJ, Boles SB. Phylogeny, species delimitation, and recombination in Sphagnum section Acutifolia Systematic Botany. 30: 16-33. DOI: 10.1600/0363644053661823  1
2004 Goffinet B, Shaw AJ, Cox CJ. Phylogenetic inferences in the dung-moss family Splachnaceae from analyses of cpDNA sequence data and implications for the evolution of entomophily. American Journal of Botany. 91: 748-59. PMID 21653429 DOI: 10.3732/Ajb.91.5.748  1
2004 Lutzoni F, Kauff F, Cox CJ, McLaughlin D, Celio G, Dentinger B, Padamsee M, Hibbett D, James TY, Baloch E, Grube M, Reeb V, Hofstetter V, Schoch C, Arnold AE, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 91: 1446-80. PMID 21652303 DOI: 10.3732/Ajb.91.10.1446  1
2004 Diezmann S, Cox CJ, Schönian G, Vilgalys RJ, Mitchell TG. Phylogeny and evolution of medical species of Candida and related taxa: a multigenic analysis. Journal of Clinical Microbiology. 42: 5624-35. PMID 15583292 DOI: 10.1128/Jcm.42.12.5624-5635.2004  1
2004 Vanderpoorten A, Shaw AJ, Cox CJ. Evolution of multiple paralogous adenosine kinase genes in the moss genus Hygroamblystegium: phylogenetic implications. Molecular Phylogenetics and Evolution. 31: 505-16. PMID 15062791 DOI: 10.1016/J.Ympev.2003.09.020  1
2004 Shaw J, Cox CJ, Boles SB. Phylogenetic relationships among Sphagnum sections: Hemitheca, Isocladus, and Subsecunda Bryologist. 107: 189-196. DOI: 10.1639/0007-2745(2004)107[0189:Prassh]2.0.Co;2  1
2004 Schneider H, Russell SJ, Cox CJ, Barker F, Henderson S, Rumsey F, Barrett J, Gibby M, Vogel JC. Chloroplast phylogeny of asplenioid ferns based on rbcL and trnL-F spacer sequences (Polypodiidae, Aspleniaceae) and its implications for biogeography Systematic Botany. 29: 260-274. DOI: 10.1600/036364404774195476  1
2004 Cox CJ, Goffinet B, Jonathan Shaw A, Boles SB. Phylogenetic relationships among the mosses based on heterogeneous Bayesian analysis of multiple genes from multiple genomic compartments Systematic Botany. 29: 234-250. DOI: 10.1600/036364404774195458  1
2004 Hedderson TA, Murray DJ, Cox CJ, Nowell TL. Phylogenetic Relationships of Haplolepideous Mosses (Dicranidae) Inferred from rps4 Gene Sequences Systematic Botany. 29: 29-41. DOI: 10.1600/036364404772973960  1
2003 Shaw AJ, Cox CJ, Boles SB. Polarity of peatmoss (Sphagnum) evolution: who says bryophytes have no roots? American Journal of Botany. 90: 1777-87. PMID 21653354 DOI: 10.3732/Ajb.90.12.1777  1
2003 Shaw AJ, Cox CJ, Goffinet B, Buck WR, Boles SB. Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (Bryophyta). Evolution; International Journal of Organic Evolution. 57: 2226-41. PMID 14628911 DOI: 10.1111/J.0014-3820.2003.Tb00235.X  1
2003 Shaw AJ, Cox CJ, Boles SB. Global patterns in peatmoss biodiversity. Molecular Ecology. 12: 2553-70. PMID 12969461 DOI: 10.1046/J.1365-294X.2003.01929.X  1
2003 Cox CJ, Hedderson TAJ. Phylogenetic relationships within the moss family Bryaceae based on chloroplast DNA evidence Journal of Bryology. 25: 31-40. DOI: 10.1179/037366803125002635  1
2003 Pedersen N, Cox CJ, Hedenäs L. Phylogeny of the moss family Bryaceae inferred from chloroplast DNA sequences and morphology Systematic Botany. 28: 471-482. DOI: 10.1043/02-46.1  1
2003 Vanderpoorten A, Goffinet B, Hedenäs L, Cox CJ, Shaw AJ. A taxonomic reassessment of the Vittiaceae (Hypnales, Bryopsida): Evidence from phylogenetic analyses of combined chloroplast and nuclear sequence data Plant Systematics and Evolution. 241: 1-12. DOI: 10.1007/S00606-003-0032-Z  1
2002 Vanderpoorten A, Hedenäs L, Cox CJ, Shaw AJ. Phylogeny and morphological evolution of the amblystegiaceae (Bryopsida). Molecular Phylogenetics and Evolution. 23: 1-21. PMID 12182399 DOI: 10.1006/Mpev.2001.1067  1
2002 Vanderpoorten A, Hedenäs L, Cox CJ, Shaw AJ. Circumscription, classification, and taxonomy of Amblystegiaceae (Bryopsida) inferred from nuclear and chloroplast DNA sequence data and morphology Taxon. 51: 115-122. DOI: 10.2307/1554968  1
2002 Buck WR, Shaw AJ, Cox CJ. A new species of Leskeodon (Daltoniaceae) from Ecuador Brittonia. 54: 178-180. DOI: 10.1663/0007-196X(2002)054[0178:Ansold]2.0.Co;2  1
2002 Pinter I, Bakker F, Barrett J, Cox C, Gibby M, Henderson S, Morgan-Richards M, Rumsey F, Russell S, Trewick S, Schneider H, Vogel J. Phylogenetic and biosystematic relationships in four highly disjunct polyploid complexes in the subgenera Ceterach and Phyllitis in Asplenium (Aspleniaceae) Organisms Diversity and Evolution. 2: 299-311. DOI: 10.1078/1439-6092-00050  1
2001 Goffinet B, Cox CJ, Shaw AJ, Hedderson TAJ. The bryophyta (mosses): Systematic and evolutionary inferences from an rps4 gene (cpDNA) phylogeny Annals of Botany. 87: 191-208. DOI: 10.1006/anbo.2000.1318  1
2000 Cox CJ, Goffinet B, Newton AE, Shaw AJ, Hedderson TAJ. Phylogenetic relationships among the diplolepideous-alternate mosses (Bryidae) inferred from nuclear and chloroplast DNA sequences Bryologist. 103: 224-241. DOI: 10.1639/0007-2745(2000)103[0224:Pratda]2.0.Co;2  1
2000 Goffinet B, Cox CJ. Phylogenetic relationships among basal-most arthrodontous mosses with special emphasis on the evolutionary significance of the Funariineae Bryologist. 103: 212-223. DOI: 10.1639/0007-2745(2000)103[0212:Prabma]2.0.Co;2  1
2000 Newton AE, Cox CJ, Duckett JG, Wheeler JA, Goffinet B, Hedderson TAJ, Mishler BD. Evolution of the major moss lineages: Phylogenetic analyses based on multiple gene sequences and morphology Bryologist. 103: 187-211. DOI: 10.1639/0007-2745(2000)103[0187:Eotmml]2.0.Co;2  1
1999 Vogel JC, Rumsey FJ, Russell SJ, Cox CJ, Holmes JS, Bujnoch W, Stark C, Barrett JA, Gibby M. Genetic structure, reproductive biology and ecology of isolated populations of asplenium csikii (Aspleniaceae, pteridophyta) Heredity. 83: 604-12. PMID 10620034 DOI: 10.1038/Sj.Hdy.6886120  1
1999 Hedderson TA, Cox CJ, Gibbings JG. Phylogenetic relationships of the Wardiaceae (Musei); evidence from 18s rRNA and rps4 gene sequences Bryologist. 102: 26-31. DOI: 10.2307/3244455  1
1999 Cox CJ, Hedderson TAJ. Phylogenetic relationships among the ciliate arthrodontous mosses: Evidence from chloroplast and nuclear DNA sequences Plant Systematics and Evolution. 215: 119-139. DOI: 10.1007/Bf00984651  1
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