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Yasunori Ichihashi - Publications

Affiliations: 
RIKEN BioResource Research Center 
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kee YJ, Ogawa S, Ichihashi Y, Shirasu K, Yoshida S. Strigolactones in rhizosphere communication: multiple molecules with diverse functions. Plant & Cell Physiology. PMID 37279572 DOI: 10.1093/pcp/pcad055  0.359
2023 Nakayama H, Ichihashi Y, Kimura S. Diversity of tomato leaf form provides novel insights into breeding. Breeding Science. 73: 76-85. PMID 37168814 DOI: 10.1270/jsbbs.22061  0.757
2022 Aoki N, Cui S, Ito C, Kumaishi K, Kobori S, Ichihashi Y, Yoshida S. Phenolic signals for prehaustorium formation in . Frontiers in Plant Science. 13: 1077996. PMID 36561443 DOI: 10.3389/fpls.2022.1077996  0.319
2022 Kumaishi K, Usui E, Suzuki K, Kobori S, Sato T, Toda Y, Takanashi H, Shinozaki S, Noda M, Takakura A, Matsumoto K, Yamasaki Y, Tsujimoto H, Iwata H, Ichihashi Y. High throughput method of 16S rRNA gene sequencing library preparation for plant root microbial community profiling. Scientific Reports. 12: 19289. PMID 36369356 DOI: 10.1038/s41598-022-23943-x  0.319
2022 Choi SW, Kumaishi K, Motohashi R, Enoki H, Chacuttayapong W, Takamizo T, Saika H, Endo M, Yamada T, Hirose A, Koizuka N, Kimura S, Kawakatsu Y, Koga H, Ito E, ... ... Ichihashi Y, et al. Oxicam-type nonsteroidal anti-inflammatory drugs enhance -mediated transient transformation in plants. Plant Biotechnology (Tokyo, Japan). 39: 323-327. PMID 36349241 DOI: 10.5511/plantbiotechnology.22.0312a  0.577
2021 Jhu MY, Ichihashi Y, Farhi M, Wong C, Sinha NR. LATERAL ORGAN BOUNDARIES DOMAIN 25 functions as a key regulator of haustorium development in dodders. Plant Physiology. 186: 2093-2110. PMID 34618110 DOI: 10.1093/plphys/kiab231  0.586
2020 Wang Y, Kumaishi K, Suzuki T, Ichihashi Y, Yamaguchi N, Shirakawa M, Ito T. Morphological and Physiological Framework Underlying Plant Longevity in . Frontiers in Plant Science. 11: 600726. PMID 33224176 DOI: 10.3389/fpls.2020.600726  0.349
2020 Ichihashi Y, Hakoyama T, Iwase A, Shirasu K, Sugimoto K, Hayashi M. Common Mechanisms of Developmental Reprogramming in Plants-Lessons From Regeneration, Symbiosis, and Parasitism. Frontiers in Plant Science. 11: 1084. PMID 32765565 DOI: 10.3389/Fpls.2020.01084  0.489
2020 Notaguchi M, Kurotani KI, Sato Y, Tabata R, Kawakatsu Y, Okayasu K, Sawai Y, Okada R, Asahina M, Ichihashi Y, Shirasu K, Suzuki T, Niwa M, Higashiyama T. Cell-cell adhesion in plant grafting is facilitated by β-1,4-glucanases. Science (New York, N.Y.). 369: 698-702. PMID 32764072 DOI: 10.1126/Science.Abc3710  0.342
2020 Kurotani KI, Wakatake T, Ichihashi Y, Okayasu K, Sawai Y, Ogawa S, Cui S, Suzuki T, Shirasu K, Notaguchi M. Host-parasite tissue adhesion by a secreted type of β-1,4-glucanase in the parasitic plant Phtheirospermum japonicum. Communications Biology. 3: 407. PMID 32733024 DOI: 10.1038/s42003-020-01143-5  0.376
2020 Ogura T, Kobayashi NI, Hermans C, Ichihashi Y, Shibata A, Shirasu K, Aoki N, Sugita R, Ogawa T, Suzuki H, Iwata R, Nakanishi TM, Tanoi K. Short-Term Magnesium Deficiency Triggers Nutrient Retranslocation in . Frontiers in Plant Science. 11: 563. PMID 32582226 DOI: 10.3389/Fpls.2020.00563  0.325
2020 Ichihashi Y, Date Y, Shino A, Shimizu T, Shibata A, Kumaishi K, Funahashi F, Wakayama K, Yamazaki K, Umezawa A, Sato T, Kobayashi M, Kamimura M, Kusano M, Che FS, et al. Multi-omics analysis on an agroecosystem reveals the significant role of organic nitrogen to increase agricultural crop yield. Proceedings of the National Academy of Sciences of the United States of America. PMID 32513689 DOI: 10.1073/Pnas.1917259117  0.376
2019 Motomura K, Arae T, Uramoto HA, Suzuki Y, Takeuchi H, Suzuki T, Ichihashi Y, Shibata A, Shirasu K, Takeda A, Higashiyama T, Chiba Y. AtNOT1 is a novel regulator of gene expression during pollen development. Plant & Cell Physiology. PMID 31879778 DOI: 10.1093/Pcp/Pcz235  0.458
2019 Yoshida S, Kim S, Wafula EK, Tanskanen J, Kim YM, Honaas L, Yang Z, Spallek T, Conn CE, Ichihashi Y, Cheong K, Cui S, Der JP, Gundlach H, Jiao Y, et al. Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism. Current Biology : Cb. PMID 31522940 DOI: 10.1016/J.Cub.2019.07.086  0.435
2019 Wu J, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, Yamaguchi N, Ito T. Abscisic acid-dependent histone demethylation during post-germination growth arrest in Arabidopsis. Plant, Cell & Environment. PMID 30859592 DOI: 10.1111/Pce.13547  0.404
2019 Lee ZH, Tatsumi Y, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, Yamaguchi N, Ito T. CRABS CLAW and SUPERMAN Coordinate Hormone-, Stress-, and Metabolic-Related Gene Expression During Arabidopsis Stamen Development Frontiers in Ecology and Evolution. 7. DOI: 10.3389/Fevo.2019.00437  0.327
2018 Ichihashi Y, Fukushima A, Shibata A, Shirasu K. High Impact Gene Discovery: Simple Strand-Specific mRNA Library Construction and Differential Regulatory Analysis Based on Gene Co-Expression Network. Methods in Molecular Biology (Clifton, N.J.). 1830: 163-189. PMID 30043371 DOI: 10.1007/978-1-4939-8657-6_11  0.352
2018 Ostria-Gallardo E, Ranjan A, Ichihashi Y, Corcuera LJ, Sinha NR. Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions. The New Phytologist. PMID 29956327 DOI: 10.1111/Nph.15278  0.543
2018 Nakayama H, Sakamoto T, Okegawa Y, Kaminoyama K, Fujie M, Ichihashi Y, Kurata T, Motohashi K, Al-Shehbaz I, Sinha N, Kimura S. Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress. Scientific Reports. 8: 3302. PMID 29459626 DOI: 10.1038/S41598-018-21646-W  0.757
2017 Ichihashi Y, Kusano M, Kobayashi M, Suetsugu K, Yoshida S, Wakatake T, Kumaishi K, Shibata A, Saito K, Shirasu K. Transcriptomic and Metabolomic Reprogramming from Roots to Haustoria in the Parasitic Plant, Thesium chinense. Plant & Cell Physiology. PMID 29281058 DOI: 10.1093/Pcp/Pcx200  0.42
2017 Uemura A, Yamaguchi N, Xu Y, Wee W, Ichihashi Y, Suzuki T, Shibata A, Shirasu K, Ito T. Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis. Plant Reproduction. PMID 29218596 DOI: 10.1007/S00497-017-0315-0  0.387
2016 An CI, Ichihashi Y, Peng J, Sinha NR, Hagiwara N. Transcriptome Dynamics and Potential Roles of Sox6 in the Postnatal Heart. Plos One. 11: e0166574. PMID 27832192 DOI: 10.1371/Journal.Pone.0166574  0.538
2016 Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR. A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification. G3 (Bethesda, Md.). PMID 27510891 DOI: 10.1534/G3.116.030536  0.507
2016 Sinha NR, Rowland SD, Ichihashi Y. Using gene networks in EvoDevo analyses. Current Opinion in Plant Biology. 33: 133-139. PMID 27455887 DOI: 10.1016/J.Pbi.2016.06.016  0.601
2016 Ranjan A, Budke J, Rowland SD, Chitwood DH, Kumar R, Carriedo LG, Ichihashi Y, Zumstein K, Maloof JN, Sinha N. eQTL regulating Transcript Levels Associated with Diverse Biological Processes in Tomato. Plant Physiology. PMID 27418589 DOI: 10.1104/Pp.16.00289  0.687
2016 Kondo Y, Nurani AM, Saito C, Ichihashi Y, Saito M, Yamazaki K, Mitsuda N, Ohme-Takagi M, Fukuda H. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-like Cells. The Plant Cell. PMID 27194709 DOI: 10.1105/Tpc.16.00027  0.331
2016 Yoshida S, Cui S, Ichihashi Y, Shirasu K. The Haustorium, a Specialized Invasive Organ in Parasitic Plants. Annual Review of Plant Biology. 67: 643-67. PMID 27128469 DOI: 10.1146/Annurev-Arplant-043015-111702  0.42
2015 Ostria-Gallardo E, Ranjan A, Chitwood DH, Kumar R, Townsley BT, Ichihashi Y, Corcuera LJ, Sinha NR. Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree Gevuina avellana (Proteaceae). The New Phytologist. PMID 26680017 DOI: 10.1111/Nph.13776  0.767
2015 Ichihashi Y, Tsukaya H. Behavior of Leaf Meristems and Their Modification. Frontiers in Plant Science. 6: 1060. PMID 26648955 DOI: 10.3389/Fpls.2015.01060  0.516
2015 Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley B, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha N. Light-induced indeterminacy alters shade avoiding tomato leaf morphology. Plant Physiology. PMID 26381315 DOI: 10.1104/Pp.15.01229  0.768
2015 Townsley BT, Covington MF, Ichihashi Y, Zumstein K, Sinha NR. BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction. Frontiers in Plant Science. 6: 366. PMID 26052336 DOI: 10.3389/Fpls.2015.00366  0.73
2015 Mutuku JM, Yoshida S, Shimizu T, Ichihashi Y, Wakatake T, Takahashi A, Seo M, Shirasu K. The WRKY45-Dependent Signaling Pathway Is Required For Resistance against Striga hermonthica Parasitism. Plant Physiology. 168: 1152-63. PMID 26025049 DOI: 10.1104/Pp.114.256404  0.432
2015 Nozue K, Tat AV, Kumar Devisetty U, Robinson M, Mumbach MR, Ichihashi Y, Lekkala S, Maloof JN. Shade avoidance components and pathways in adult plants revealed by phenotypic profiling. Plos Genetics. 11: e1004953. PMID 25874869 DOI: 10.1371/Journal.Pgen.1004953  0.474
2015 Ichihashi Y, Mutuku JM, Yoshida S, Shirasu K. Transcriptomics exposes the uniqueness of parasitic plants. Briefings in Functional Genomics. 14: 275-82. PMID 25700082 DOI: 10.1093/Bfgp/Elv001  0.472
2015 Ranjan A, Townsley BT, Ichihashi Y, Sinha NR, Chitwood DH. An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia. Plos Genetics. 11: e1004900. PMID 25569326 DOI: 10.1371/Journal.Pgen.1004900  0.777
2014 Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR. Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context. The Plant Cell. 26: 3616-29. PMID 25271240 DOI: 10.1105/Tpc.114.130112  0.636
2014 Ichihashi Y, Aguilar-Martínez JA, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JN, Sinha NR. Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape. Proceedings of the National Academy of Sciences of the United States of America. 111: E2616-21. PMID 24927584 DOI: 10.1073/Pnas.1402835111  0.67
2014 Ichihashi Y, Sinha NR. From genome to phenome and back in tomato. Current Opinion in Plant Biology. 18: 9-15. PMID 24440917 DOI: 10.1016/J.Pbi.2013.12.004  0.563
2014 Ranjan A, Ichihashi Y, Farhi M, Zumstein K, Townsley B, David-Schwartz R, Sinha NR. De novo assembly and characterization of the transcriptome of the parasitic weed dodder identifies genes associated with plant parasitism. Plant Physiology. 166: 1186-99. PMID 24399359 DOI: 10.1104/Pp.113.234864  0.771
2013 Chitwood DH, Kumar R, Headland LR, Ranjan A, Covington MF, Ichihashi Y, Fulop D, Jiménez-Gómez JM, Peng J, Maloof JN, Sinha NR. A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines. The Plant Cell. 25: 2465-81. PMID 23872539 DOI: 10.1105/Tpc.113.112391  0.631
2012 Kumar R, Ichihashi Y, Kimura S, Chitwood DH, Headland LR, Peng J, Maloof JN, Sinha NR. A High-Throughput Method for Illumina RNA-Seq Library Preparation. Frontiers in Plant Science. 3: 202. PMID 22973283 DOI: 10.3389/Fpls.2012.00202  0.716
2012 Ranjan A, Ichihashi Y, Sinha NR. The tomato genome: implications for plant breeding, genomics and evolution. Genome Biology. 13: 167. PMID 22943138 DOI: 10.1186/Gb-2012-13-8-167  0.56
2011 Ichihashi Y, Kawade K, Usami T, Horiguchi G, Takahashi T, Tsukaya H. Key proliferative activity in the junction between the leaf blade and leaf petiole of Arabidopsis. Plant Physiology. 157: 1151-62. PMID 21880932 DOI: 10.1104/Pp.111.185066  0.451
2010 Kazama T, Ichihashi Y, Murata S, Tsukaya H. The mechanism of cell cycle arrest front progression explained by a KLUH/CYP78A5-dependent mobile growth factor in developing leaves of Arabidopsis thaliana. Plant & Cell Physiology. 51: 1046-54. PMID 20395288 DOI: 10.1093/Pcp/Pcq051  0.341
2010 Ichihashi Y, Horiguchi G, Gleissberg S, Tsukaya H. The bHLH transcription factor SPATULA controls final leaf size in Arabidopsis thaliana. Plant & Cell Physiology. 51: 252-61. PMID 20040585 DOI: 10.1093/Pcp/Pcp184  0.39
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