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Elisabetta V. Puglisi - Publications

Affiliations: 
Structural Biology Stanford University School of Medicine, Palo Alto, CA, United States 
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nouhin J, Tzou PL, Rhee SY, Sahoo MK, Pinsky BA, Krupkin M, Puglisi JD, Puglisi EV, Shafer RW. Human immunodeficiency virus 1 5'-leader mutations in plasma viruses before and after the development of reverse transcriptase inhibitor-resistance mutations. The Journal of General Virology. 104. PMID 37801004 DOI: 10.1099/jgv.0.001898  0.733
2023 Wang J, Koduru T, Harish B, McCallum SA, Larsen KP, Patel KS, Peters EV, Gillilan RE, Puglisi EV, Puglisi JD, Makhatadze G, Royer CA. Pressure pushes tRNA into excited conformational states. Proceedings of the National Academy of Sciences of the United States of America. 120: e2215556120. PMID 37339210 DOI: 10.1073/pnas.2215556120  0.597
2023 Nouhin J, Tzou P, Rhee SY, Sahoo MK, Pinsky BA, Krupkin MA, Puglisi JD, Puglisi EV, Shafer RW. HIV-1 5'-Leader Mutations in Plasma Viruses Before and After the Development of Reverse Transcriptase Inhibitor-Resistance Mutations. Medrxiv : the Preprint Server For Health Sciences. PMID 37333388 DOI: 10.1101/2023.06.04.23290942  0.745
2022 Prabhakar A, Krahn N, Zhang J, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnković A, Ehrenberg M, Puglisi EV, Söll D, Puglisi J. Uncovering translation roadblocks during the development of a synthetic tRNA. Nucleic Acids Research. PMID 35882385 DOI: 10.1093/nar/gkac576  0.733
2021 Ha B, Larsen KP, Zhang J, Fu Z, Montabana E, Jackson LN, Chen DH, Puglisi EV. High-resolution view of HIV-1 reverse transcriptase initiation complexes and inhibition by NNRTI drugs. Nature Communications. 12: 2500. PMID 33947853 DOI: 10.1038/s41467-021-22628-9  0.441
2020 Krupkin M, Jackson LN, Ha B, Puglisi EV. Advances in understanding the initiation of HIV-1 reverse transcription. Current Opinion in Structural Biology. 65: 175-183. PMID 32916568 DOI: 10.1016/J.Sbi.2020.07.005  0.761
2020 Larsen KP, Choi J, Jackson LN, Kappel K, Zhang J, Ha B, Chen DH, Puglisi EV. Distinct Conformational States Underlie Pausing during Initiation of HIV-1 Reverse Transcription. Journal of Molecular Biology. PMID 32512005 DOI: 10.1016/J.Jmb.2020.06.003  0.551
2019 Larsen KP, Choi J, Prabhakar A, Puglisi EV, Puglisi JD. Relating Structure and Dynamics in RNA Biology. Cold Spring Harbor Perspectives in Biology. 11. PMID 31262948 DOI: 10.1101/Cshperspect.A032474  0.656
2019 Choi J, Grosely R, Puglisi EV, Puglisi JD. Expanding single-molecule fluorescence spectroscopy to capture complexity in biology. Current Opinion in Structural Biology. PMID 31213390 DOI: 10.1016/J.Sbi.2019.05.005  0.541
2018 Kappel K, Liu S, Larsen KP, Skiniotis G, Puglisi EV, Puglisi JD, Zhou ZH, Zhao R, Das R. De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes. Nature Methods. 15: 947-954. PMID 30377372 DOI: 10.1038/S41592-018-0172-2  0.624
2018 Coey AT, Larsen KP, Choi J, Barrero DJ, Puglisi JD, Puglisi EV. Dynamic Interplay of RNA and Protein in the Human Immunodeficiency Virus-1 Reverse Transcription Initiation Complex. Journal of Molecular Biology. PMID 30201267 DOI: 10.1016/J.Jmb.2018.08.029  0.668
2018 Prabhakar A, Puglisi EV, Puglisi JD. Single-Molecule Fluorescence Applied to Translation. Cold Spring Harbor Perspectives in Biology. PMID 29891562 DOI: 10.1101/Cshperspect.A032714  0.569
2018 Larsen KP, Mathiharan YK, Kappel K, Coey AT, Chen DH, Barrero D, Madigan L, Puglisi JD, Skiniotis G, Puglisi EV. Architecture of an HIV-1 reverse transcriptase initiation complex. Nature. PMID 29695867 DOI: 10.1038/S41586-018-0055-9  0.709
2016 Chen J, Choi J, O'Leary SE, Prabhakar A, Petrov A, Grosely R, Puglisi EV, Puglisi JD. The molecular choreography of protein synthesis: translational control, regulation, and pathways. Quarterly Reviews of Biophysics. 49: e11. PMID 27658712 DOI: 10.1017/S0033583516000056  0.563
2016 Coey A, Larsen K, Puglisi JD, Puglisi EV. Heterogeneous structures formed by conserved RNA sequences within the HIV reverse transcription initiation site. Rna (New York, N.Y.). PMID 27613581 DOI: 10.1261/Rna.056804.116  0.703
2016 Navon SP, Kornberg G, Chen J, Schwartzman T, Tsai A, Puglisi EV, Puglisi JD, Adir N. Amino acid sequence repertoire of the bacterial proteome and the occurrence of untranslatable sequences. Proceedings of the National Academy of Sciences of the United States of America. PMID 27307442 DOI: 10.1073/Pnas.1606518113  0.554
2015 Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster AS, Young ID, Michels-Clark T, Aquila A, Liang M, Hunter MS, ... ... Puglisi EV, et al. Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II. Nature Methods. PMID 26619013 DOI: 10.1038/Nmeth.3667  0.511
2013 Petrov A, Wu T, Puglisi EV, Puglisi JD. RNA purification by preparative polyacrylamide gel electrophoresis. Methods in Enzymology. 530: 315-30. PMID 24034329 DOI: 10.1016/B978-0-12-420037-1.00017-8  0.632
2013 Tsai A, Uemura S, Johansson M, Puglisi EV, Marshall RA, Aitken CE, Korlach J, Ehrenberg M, Puglisi JD. The impact of aminoglycosides on the dynamics of translation elongation. Cell Reports. 3: 497-508. PMID 23416053 DOI: 10.1016/J.Celrep.2013.01.027  0.584
2013 Puglisi EV, Puglisi JD. Using NMR to determine the conformation of the HIV reverse transcription initiation complex Nato Science For Peace and Security Series B: Physics and Biophysics. 97-119. DOI: 10.1007/978-94-007-4923-8-7  0.57
2011 Puglisi EV, Puglisi JD. Secondary structure of the HIV reverse transcription initiation complex by NMR. Journal of Molecular Biology. 410: 863-74. PMID 21763492 DOI: 10.1016/J.Jmb.2011.04.024  0.708
2007 McKenna SA, Kim I, Puglisi EV, Lindhout DA, Aitken CE, Marshall RA, Puglisi JD. Purification and characterization of transcribed RNAs using gel filtration chromatography. Nature Protocols. 2: 3270-7. PMID 18079727 DOI: 10.1038/Nprot.2007.480  0.64
2007 Puglisi EV, Puglisi JD. Probing the conformation of human tRNA(3)(Lys) in solution by NMR. Febs Letters. 581: 5307-14. PMID 17963705 DOI: 10.1016/J.Febslet.2007.10.026  0.651
1998 Puglisi EV, Puglisi JD. HIV-1 A-rich RNA loop mimics the tRNA anticodon structure. Nature Structural Biology. 5: 1033-6. PMID 9846871 DOI: 10.1038/4141  0.704
1998 Puglisi EV, Puglisi JD. Nuclear Magnetic Resonance Spectroscopy of RNA Cold Spring Harbor Monograph Archive. 35: 117-146. DOI: 10.1101/087969509.35.117  0.412
1997 Puglisi EV, Green R, Noller HF, Puglisi JD. Structure of a conserved RNA component of the peptidyl transferase centre. Nature Structural Biology. 4: 775-8. PMID 9334738 DOI: 10.1038/Nsb1097-775  0.645
1996 Noller HF, Green R, Heilek G, Hoffarth V, Hüttenhofer A, Joseph S, Lee I, Lieberman K, Mankin A, Merryman C, Powers T, Puglisi EV, Samaha RR, Weiser B. Erratum: Structure and function of ribosomal RNA Biochemistry and Cell Biology. 74: 417-417. DOI: 10.1139/O96-045  0.322
1994 Puglisi EV, Puglisi JD, Williamson JR, RajBhandary UL. NMR analysis of tRNA acceptor stem microhelices: discriminator base change affects tRNA conformation at the 3' end. Proceedings of the National Academy of Sciences of the United States of America. 91: 11467-71. PMID 7972085 DOI: 10.1073/Pnas.91.24.11467  0.614
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