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She Zhang - Publications

Affiliations: 
University of Pittsburgh, Pittsburgh, PA, United States 
Area:
Computational Biology
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16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Acar O, Zhang S, Bahar I, Carvunis AR. Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow. Plos Computational Biology. 18: e1010181. PMID 35639793 DOI: 10.1371/journal.pcbi.1010181  0.427
2021 Zhang Y, Zhang S, Xing J, Bahar I. Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis. The Journal of Chemical Physics. 154: 195102. PMID 34240914 DOI: 10.1063/5.0046710  0.454
2021 Kaynak BT, Zhang S, Bahar I, Doruker P. ClustENMD: Efficient sampling of biomolecular conformational space at atomic resolution. Bioinformatics (Oxford, England). PMID 34240100 DOI: 10.1093/bioinformatics/btab496  0.636
2021 Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I. ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python. Bioinformatics (Oxford, England). PMID 33822884 DOI: 10.1093/bioinformatics/btab187  0.652
2021 Zheng F, Zhang S, Churas C, Pratt D, Bahar I, Ideker T. HiDeF: identifying persistent structures in multiscale 'omics data. Genome Biology. 22: 21. PMID 33413539 DOI: 10.1186/s13059-020-02228-4  0.501
2020 Cheng MH, Zhang S, Porritt RA, Noval Rivas M, Paschold L, Willscher E, Binder M, Arditi M, Bahar I. Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32989130 DOI: 10.1073/pnas.2010722117  0.435
2020 Zheng F, Zhang S, Churas C, Pratt D, Bahar I, Ideker T. Decoding of persistent multiscale structures in complex biological networks. Biorxiv : the Preprint Server For Biology. PMID 32587977 DOI: 10.1101/2020.06.16.151555  0.482
2020 Cheng MH, Zhang S, Porritt RA, Arditi M, Bahar I. An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations. Biorxiv : the Preprint Server For Biology. PMID 32511374 DOI: 10.1101/2020.05.21.109272  0.446
2019 Zhang S, Chen F, Bahar I. Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiation. Nucleic Acids Research. PMID 31828312 DOI: 10.1093/Nar/Gkz1102  0.561
2019 Zhang Y, Doruker P, Kaynak B, Zhang S, Krieger J, Li H, Bahar I. Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior. Current Opinion in Structural Biology. 62: 14-21. PMID 31785465 DOI: 10.1016/J.Sbi.2019.11.002  0.657
2019 Cheng MH, Ponzoni L, Sorkina T, Lee JY, Zhang S, Sorkin A, Bahar I. Trimerization of dopamine transporter triggered by AIM-100 binding: Molecular mechanism and effect of mutations. Neuropharmacology. 107676. PMID 31228486 DOI: 10.1016/J.Neuropharm.2019.107676  0.5
2019 Zhang S, Li H, Krieger JM, Bahar I. Shared signature dynamics tempered by local fluctuations enables fold adaptability and specificity. Molecular Biology and Evolution. PMID 31028708 DOI: 10.1093/Molbev/Msz102  0.638
2019 Mikulska-Ruminska K, Shrivastava IH, Krieger J, Zhang S, Li H, Bayir H, Wenzel SE, VanDemark AP, Kagan VE, Bahar I. Characterization of differential dynamics, specificity, and allostery of lipoxygenase family members. Journal of Chemical Information and Modeling. PMID 30762363 DOI: 10.1021/Acs.Jcim.9B00006  0.582
2018 Ponzoni L, Zhang S, Cheng MH, Bahar I. Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 29735731 DOI: 10.1098/Rstb.2017.0177  0.61
2017 Sauerwald N, Zhang S, Kingsford C, Bahar I. Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings. Nucleic Acids Research. PMID 28334818 DOI: 10.1093/Nar/Gkx172  0.563
2015 Bahar I, Cheng MH, Lee JY, Kaya C, Zhang S. Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions. Biophysical Journal. PMID 26143655 DOI: 10.1016/J.Bpj.2015.06.004  0.616
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