Jennifer D. Cooper, Ph.D. - Publications

Biology California State University, Stanislaus 
Mammalian population ecology and genetics

131 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Theobald EJ, Hill MJ, Tran E, Agrawal S, Arroyo EN, Behling S, Chambwe N, Cintrón DL, Cooper JD, Dunster G, Grummer JA, Hennessey K, Hsiao J, Iranon N, Jones L, et al. Active learning narrows achievement gaps for underrepresented students in undergraduate science, technology, engineering, and math. Proceedings of the National Academy of Sciences of the United States of America. PMID 32152114 DOI: 10.1073/Pnas.1916903117  0.01
2016 Cooper JD, Kerr B. Evolution at 'Sutures' and 'Centers': Recombination Can Aid Adaptation of Spatially Structured Populations on Rugged Fitness Landscapes. Plos Computational Biology. 12: e1005247. PMID 27973606 DOI: 10.1371/Journal.Pcbi.1005247  0.01
2016 Lamers F, Bot M, Jansen R, Chan MK, Cooper JD, Bahn S, Penninx BW. Serum proteomic profiles of depressive subtypes. Translational Psychiatry. 6: e851. PMID 27404283 DOI: 10.1038/Tp.2016.115  0.01
2016 Cox DA, Gottschalk MG, Wesseling H, Ernst A, Cooper JD, Bahn S. Proteomic systems evaluation of the molecular validity of preclinical psychosis models compared to schizophrenia brain pathology. Schizophrenia Research. PMID 27335180 DOI: 10.1016/J.Schres.2016.06.012  0.01
2016 Wager K, Zdebik AA, Fu S, Cooper JD, Harvey RJ, Russell C. Neurodegeneration and Epilepsy in a Zebrafish Model of CLN3 Disease (Batten Disease). Plos One. 11: e0157365. PMID 27327661 DOI: 10.1371/journal.pone.0157365  0.01
2016 Ruland T, Chan MK, Stocki P, Grosse L, Rothermundt M, Cooper JD, Arolt V, Bahn S. Molecular serum signature of treatment resistant depression. Psychopharmacology. PMID 27325393 DOI: 10.1007/S00213-016-4348-0  0.01
2016 Ramsey JM, Cooper JD, Penninx BW, Bahn S. Variation in serum biomarkers with sex and female hormonal status: implications for clinical tests. Scientific Reports. 6: 26947. PMID 27240929 DOI: 10.1038/Srep26947  0.01
2016 Ramsey JM, Cooper JD, Bot M, Guest PC, Lamers F, Weickert CS, Penninx BW, Bahn S. Sex Differences in Serum Markers of Major Depressive Disorder in the Netherlands Study of Depression and Anxiety (NESDA). Plos One. 11: e0156624. PMID 27232630 DOI: 10.1371/Journal.Pone.0156624  0.01
2016 Cooper JD. Surgery of the airway: historic notes. Journal of Thoracic Disease. 8: S113-20. PMID 26981261 DOI: 10.3978/j.issn.2072-1439.2016.01.87  0.01
2016 Cooper JD, Gotoff RA. Streptococcus anginosus Purulent Pericarditis With Contiguous Hepatic and Subdiaphragmatic Fluid Collections: First Reported Case Infectious Diseases in Clinical Practice. DOI: 10.1097/IPC.0000000000000381  0.01
2016 Razali R, Valavanis A, Cooper JD, Ikonić Z, Indjin D, Harrison P. Mid-infrared entangled photon generation in optimised asymmetric semiconductor quantum wells Superlattices and Microstructures. 90: 107-116. DOI: 10.1016/j.spmi.2015.11.015  0.01
2015 Gottschalk MG, Cooper JD, Chan MK, Bot M, Penninx BW, Bahn S. Serum biomarkers predictive of depressive episodes in panic disorder. Journal of Psychiatric Research. 73: 53-62. PMID 26687614 DOI: 10.1016/J.Jpsychires.2015.11.012  0.01
2015 O'Neill AS, Terry SY, Brown K, Meader L, Wong AM, Cooper JD, Crocker PR, Wong W, Mullen GE. Non-invasive molecular imaging of inflammatory macrophages in allograft rejection. Ejnmmi Research. 5: 69. PMID 26611870 DOI: 10.1186/s13550-015-0146-7  0.01
2015 Boiko JR, Srinath AI, Cooper JD. Portomesenteric Venous Thrombosis in Previously Healthy Adolescents Presenting With Subacute Abdominal Pain. Clinical Pediatrics. PMID 26581354 DOI: 10.1177/0009922815616247  0.01
2015 Chan MK, Cooper JD, Bot M, Steiner J, Penninx BW, Bahn S. Identification of an Immune-Neuroendocrine Biomarker Panel for Detection of Depression: A Joint Effects Statistical Approach. Neuroendocrinology. PMID 26580065 DOI: 10.1159/000442208  0.01
2015 Chan MK, Cooper JD, Bahn S. Commercialisation of Biomarker Tests for Mental Illnesses: Advances and Obstacles. Trends in Biotechnology. PMID 26549771 DOI: 10.1016/J.Tibtech.2015.09.010  0.01
2015 Vernon AC, So PW, Lythgoe DJ, Chege W, Cooper JD, Williams SC, Kapur S. Longitudinal in vivo maturational changes of metabolites in the prefrontal cortex of rats exposed to polyinosinic-polycytidylic acid in utero. European Neuropsychopharmacology : the Journal of the European College of Neuropsychopharmacology. PMID 26475576 DOI: 10.1016/J.Euroneuro.2015.09.022  0.01
2015 Haenisch F, Cooper JD, Reif A, Kittel-Schneider S, Steiner J, Markus Leweke F, Rothermundt M, van Beveren NJ, Crespo-Facorro B, Niebuhr DW, Cowan DN, Weber NS, Yolken RH, Penninx BW, Bahn S. Towards a blood-based diagnostic panel for bipolar disorder. Brain, Behavior, and Immunity. PMID 26441135 DOI: 10.1016/J.Bbi.2015.10.001  0.01
2015 Cooper JD. 50th Anniversary Landmark Commentary on Griffith BP, Hardesty RL, Trento A, et al. Heart-lung transplantation: lessons learned and future hopes. Ann Thorac Surg 1987;43:6-16. The Annals of Thoracic Surgery. 100: 1151-2. PMID 26434425 DOI: 10.1016/j.athoracsur.2015.08.029  0.01
2015 Cotel MC, Lenartowicz EM, Natesan S, Modo MM, Cooper JD, Williams SC, Kapur S, Vernon AC. Microglial activation in the rat brain following chronic antipsychotic treatment at clinically relevant doses. European Neuropsychopharmacology : the Journal of the European College of Neuropsychopharmacology. PMID 26321204 DOI: 10.1016/J.Euroneuro.2015.08.004  0.01
2015 Roberts DA, Pilgrim BS, Cooper JD, Ronson TK, Zarra S, Nitschke JR. Post-assembly Modification of Tetrazine-Edged Fe(II)4L6 Tetrahedra. Journal of the American Chemical Society. 137: 10068-71. PMID 26252626 DOI: 10.1021/Jacs.5B05080  0.01
2015 Chan MK, Krebs MO, Cox D, Guest PC, Yolken RH, Rahmoune H, Rothermundt M, Steiner J, Leweke FM, van Beveren NJ, Niebuhr DW, Weber NS, Cowan DN, Suarez-Pinilla P, Crespo-Facorro B, ... ... Cooper JD, et al. Development of a blood-based molecular biomarker test for identification of schizophrenia before disease onset. Translational Psychiatry. 5: e601. PMID 26171982 DOI: 10.1038/Tp.2015.91  0.01
2015 Behar S, Cooper J. Best Practices In The Emergency Department Management Of Children With Special Needs. Pediatric Emergency Medicine Practice. 12: 1-25; quiz 26. PMID 26118120  0.01
2015 Cismondi IA, Kohan R, Adams H, Bond M, Brown R, Cooper JD, de Hidalgo PK, Holthaus SK, Mole SE, Mugnaini J, de Ramirez AM, Pesaola F, Rautenberg G, Platt FM, de Halac IN. Guidelines for incorporating scientific knowledge and practice on rare diseases into higher education: neuronal ceroid lipofuscinoses as a model disorder. Biochimica Et Biophysica Acta. PMID 26117801 DOI: 10.1016/J.Bbadis.2015.06.018  0.01
2015 Verleden SE, Vasilescu DM, McDonough JE, Ruttens D, Vos R, Vandermeulen E, Bellon H, Geenens R, Verbeken EK, Verschakelen J, Van Raemdonck DE, Wuyts WA, Sokolow Y, Knoop C, Cooper JD, et al. Linking clinical phenotypes of chronic lung allograft dysfunction to changes in lung structure. The European Respiratory Journal. PMID 26113688 DOI: 10.1183/09031936.00010615  0.01
2015 Wallace C, Cutler AJ, Pontikos N, Pekalski ML, Burren OS, Cooper JD, García AR, Ferreira RC, Guo H, Walker NM, Smyth DJ, Rich SS, Onengut-Gumuscu S, Sawcer SJ, Ban M, et al. Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping. Plos Genetics. 11: e1005272. PMID 26106896 DOI: 10.1371/Journal.Pgen.1005272  0.01
2015 Dent MR, López-Duarte I, Dickson CJ, Geoghegan ND, Cooper JM, Gould IR, Krams R, Bull JA, Brooks NJ, Kuimova MK. Imaging phase separation in model lipid membranes through the use of BODIPY based molecular rotors. Physical Chemistry Chemical Physics : Pccp. 17: 18393-402. PMID 26104504 DOI: 10.1039/c5cp01937k  0.01
2015 Mooren OL, Kim J, Li J, Cooper JA. Role of N-WASP in Endothelial Monolayer Formation and Integrity. The Journal of Biological Chemistry. 290: 18796-805. PMID 26070569 DOI: 10.1074/Jbc.M115.668285  0.01
2015 Mattar CN, Wong AM, Hoefer K, Alonso-Ferrero ME, Buckley SM, Howe SJ, Cooper JD, Waddington SN, Chan JK, Rahim AA. Systemic gene delivery following intravenous administration of AAV9 to fetal and neonatal mice and late-gestation nonhuman primates. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 26062602 DOI: 10.1096/fj.14-269092  0.01
2015 Mendez DC, Stover AE, Rangel AD, Brick DJ, Nethercott HE, Torres MA, Khalid O, Wong AM, Cooper JD, Jester JV, Monuki ES, McGuire C, Le SQ, Kan SH, Dickson PI, et al. A novel, long-lived, and highly engraftable immunodeficient mouse model of mucopolysaccharidosis type I. Molecular Therapy. Methods & Clinical Development. 2: 14068. PMID 26052536 DOI: 10.1038/Mtm.2014.68  0.01
2015 Callan RS, Cooper JR, Young NB, Mollica AG, Furness AR, Looney SW. Inter- and Intrarater Reliability Using Different Software Versions of E4D Compare in Dental Education. Journal of Dental Education. 79: 711-8. PMID 26034037 DOI: 10.1002/J.0022-0337.2015.79.6.Tb05945.X  0.01
2015 Callan RS, Cooper JR, Young NB, Mollica AG, Furness AR, Looney SW. Effect of Employing Different Typodonts When Using E4D Compare for Dental Student Assessment. Journal of Dental Education. 79: 705-10. PMID 26034036 DOI: 10.1002/J.0022-0337.2015.79.6.Tb05944.X  0.01
2015 Cooper JA, Worthy DA, Maddox WT. Information about foregone rewards impedes dynamic decision-making in older adults. Neuropsychology, Development, and Cognition. Section B, Aging, Neuropsychology and Cognition. 1-14. PMID 26033485 DOI: 10.1080/13825585.2015.1052364  0.01
2015 Cooper JD, Tarczyluk MA, Nelvagal HR. Towards a new understanding of NCL pathogenesis. Biochimica Et Biophysica Acta. PMID 26026924 DOI: 10.1016/j.bbadis.2015.05.014  0.01
2015 Blanco NJ, Love BC, Cooper JA, McGeary JE, Knopik VS, Maddox WT. A frontal dopamine system for reflective exploratory behavior. Neurobiology of Learning and Memory. 123: 84-91. PMID 26004676 DOI: 10.1016/J.Nlm.2015.05.004  0.01
2015 Cooper JD, Neuhauser C, Dean AM, Kerr B. Tipping the mutation-selection balance: Limited migration increases the frequency of deleterious mutants. Journal of Theoretical Biology. 380: 123-133. PMID 25983046 DOI: 10.1016/J.Jtbi.2015.05.003  0.01
2015 Lu JY, Nelvagal HR, Wang L, Birnbaum SG, Cooper JD, Hofmann SL. Intrathecal enzyme replacement therapy improves motor function and survival in a preclinical mouse model of infantile neuronal ceroid lipofuscinosis. Molecular Genetics and Metabolism. PMID 25982063 DOI: 10.1016/j.ymgme.2015.05.005  0.01
2015 Tveen-Jensen K, Gesellchen F, Wilson R, Spickett CM, Cooper JM, Pitt AR. Interfacing low-energy SAW nebulization with Liquid Chromatography-Mass Spectrometry for the analysis of biological samples. Scientific Reports. 5: 9736. PMID 25978651 DOI: 10.1038/srep09736  0.01
2015 Yates T, Davies MJ, Henson J, Edwardson C, Webb D, Bodicoat DH, Webb M, Howard P, Cooper JA, Humphries SE, Khunti K, Talmud P. Effect of the PPARG2 Pro12Ala Polymorphism on Associations of Physical Activity and Sedentary Time with Markers of Insulin Sensitivity in Those with an Elevated Risk of Type 2 Diabetes. Plos One. 10: e0124062. PMID 25974167 DOI: 10.1371/journal.pone.0124062  0.01
2015 Gottschalk MG, Cooper JD, Chan MK, Bot M, Penninx BW, Bahn S. Discovery of serum biomarkers predicting development of a subsequent depressive episode in social anxiety disorder. Brain, Behavior, and Immunity. 48: 123-31. PMID 25929723 DOI: 10.1016/J.Bbi.2015.04.011  0.01
2015 Romdhane S, Devers-Lamrani M, Martin-Laurent F, Calvayrac C, Rocaboy-Faquet E, Riboul D, Cooper JF, Barthelmebs L. Isolation and characterization of Bradyrhizobium sp. SR1 degrading two β-triketone herbicides. Environmental Science and Pollution Research International. PMID 25903192 DOI: 10.1007/s11356-015-4544-1  0.01
2015 Binder E, Natarajan D, Cooper J, Kronfli R, Cananzi M, Delalande JM, McCann C, Burns AJ, Thapar N. Enteric neurospheres are not specific to neural crest cultures: implications for neural stem cell therapies. Plos One. 10: e0119467. PMID 25799576 DOI: 10.1371/Journal.Pone.0119467  0.01
2015 Onengut-Gumuscu S, Chen WM, Burren O, Cooper NJ, Quinlan AR, Mychaleckyj JC, Farber E, Bonnie JK, Szpak M, Schofield E, Achuthan P, Guo H, Fortune MD, Stevens H, Walker NM, ... Cooper JD, et al. Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers. Nature Genetics. 47: 381-6. PMID 25751624 DOI: 10.1038/Ng.3245  0.01
2015 Cooper JD, Dorion RP, Smith JL. A rare case of Waterhouse-Friderichsen syndrome caused by Capnocytophaga canimorsus in an immunocompetent patient. Infection. PMID 25676131 DOI: 10.1007/s15010-015-0740-7  0.01
2015 Cooper JD, Brooks HR, Nelvagal HR. Quantifying storage material accumulation in tissue sections. Methods in Cell Biology. 126: 349-56. PMID 25665454 DOI: 10.1016/bs.mcb.2014.11.010  0.01
2015 Cooper NJ, Shtir CJ, Smyth DJ, Guo H, Swafford AD, Zanda M, Hurles ME, Walker NM, Plagnol V, Cooper JD, Howson JM, Burren OS, Onengut-Gumuscu S, Rich SS, Todd JA. Detection and correction of artefacts in estimation of rare copy number variants and analysis of rare deletions in type 1 diabetes. Human Molecular Genetics. 24: 1774-90. PMID 25424174 DOI: 10.1093/Hmg/Ddu581  0.01
2015 Vuillemenot BR, Kennedy D, Cooper JD, Wong AM, Sri S, Doeleman T, Katz ML, Coates JR, Johnson GC, Reed RP, Adams EL, Butt MT, Musson DG, Henshaw J, Keve S, et al. Nonclinical evaluation of CNS-administered TPP1 enzyme replacement in canine CLN2 neuronal ceroid lipofuscinosis. Molecular Genetics and Metabolism. 114: 281-93. PMID 25257657 DOI: 10.1016/J.Ymgme.2014.09.004  0.01
2015 Nelson DM, Braham M, Miller TA, Duerr AE, Cooper J, Lanzone M, Lemaître J, Katzner T. Stable hydrogen isotopes identify leapfrog migration, degree of connectivity, and summer distribution of Golden Eagles in eastern North America Condor. 117: 414-429. DOI: 10.1650/Condor-14-209.1  0.01
2015 Kao WC, Goryll M, Marinella M, Kaplar RJ, Jiao C, Dhar S, Cooper JA, Schroder DK. Characterization of fast interface states in nitrogen- and phosphorus-treated 4H-SiC MOS capacitors Semiconductor Science and Technology. 30. DOI: 10.1088/0268-1242/30/7/075011  0.01
2015 Webster MS, Cooper JS, Chow E, Hubble LJ, Sosa-Pintos A, Wieczorek L, Raguse B. Detection of bacterial metabolites for the discrimination of bacteria utilizing gold nanoparticle chemiresistor sensors Sensors and Actuators, B: Chemical. 220: 895-902. DOI: 10.1016/j.snb.2015.06.024  0.01
2015 Ducey S, Cooper J. Hypovolemia Resulting in Platypnea-orthodeoxia Syndrome Journal of Emergency Medicine. DOI: 10.1016/j.jemermed.2015.06.020  0.01
2015 Cooper JL, Wade TD. The Relationship Between Memory and Interpretation Biases, Difficulties with Emotion Regulation, and Disordered Eating in Young Women Cognitive Therapy and Research. DOI: 10.1007/s10608-015-9709-1  0.01
2014 Cooper JD. Apples, oranges, and lemons: making sense of lung volume reduction surgery. The Journal of Thoracic and Cardiovascular Surgery. 148: 2470-1. PMID 25433867 DOI: 10.1016/j.jtcvs.2014.10.018  0.01
2014 Macauley SL, Wong AM, Shyng C, Augner DP, Dearborn JT, Pearse Y, Roberts MS, Fowler SC, Cooper JD, Watterson DM, Sands MS. An anti-neuroinflammatory that targets dysregulated glia enhances the efficacy of CNS-directed gene therapy in murine infantile neuronal ceroid lipofuscinosis. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 13077-82. PMID 25253854 DOI: 10.1523/Jneurosci.2518-14.2014  0.01
2014 Grishchuk Y, Sri S, Rudinskiy N, Ma W, Stember KG, Cottle MW, Sapp E, Difiglia M, Muzikansky A, Betensky RA, Wong AM, Bacskai BJ, Hyman BT, Kelleher RJ, Cooper JD, et al. Behavioral deficits, early gliosis, dysmyelination and synaptic dysfunction in a mouse model of mucolipidosis IV. Acta Neuropathologica Communications. 2: 133. PMID 25200117 DOI: 10.1186/S40478-014-0133-7  0.01
2014 Malec LM, Sidonio RF, Smith KJ, Cooper JD. Three cost-utility analyses of screening for intracranial hemorrhage in neonates with hemophilia. Journal of Pediatric Hematology/Oncology. 36: 474-9. PMID 25054457 DOI: 10.1097/MPH.0000000000000174  0.01
2014 Cooper JD, Hannauer M, Marolda CL, Briere LA, Heinrichs DE. Identification of a positively charged platform in Staphylococcus aureus HtsA that is essential for ferric staphyloferrin A transport. Biochemistry. 53: 5060-9. PMID 25050909 DOI: 10.1021/bi500729h  0.01
2014 Stelzhammer V, Haenisch F, Chan MK, Cooper JD, Steiner J, Steeb H, Martins-de-Souza D, Rahmoune H, Guest PC, Bahn S. Proteomic changes in serum of first onset, antidepressant drug-naïve major depression patients. The International Journal of Neuropsychopharmacology / Official Scientific Journal of the Collegium Internationale Neuropsychopharmacologicum (Cinp). 17: 1599-608. PMID 24901538 DOI: 10.1017/S1461145714000819  0.01
2014 Steeb H, Ramsey JM, Guest PC, Stocki P, Cooper JD, Rahmoune H, Ingudomnukul E, Auyeung B, Ruta L, Baron-Cohen S, Bahn S. Serum proteomic analysis identifies sex-specific differences in lipid metabolism and inflammation profiles in adults diagnosed with Asperger syndrome. Molecular Autism. 5: 4. PMID 24467795 DOI: 10.1186/2040-2392-5-4  0.01
2014 Sondhi D, Scott EC, Chen A, Hackett NR, Wong AM, Kubiak A, Nelvagal HR, Pearse Y, Cotman SL, Cooper JD, Crystal RG. Partial correction of the CNS lysosomal storage defect in a mouse model of juvenile neuronal ceroid lipofuscinosis by neonatal CNS administration of an adeno-associated virus serotype rh.10 vector expressing the human CLN3 gene. Human Gene Therapy. 25: 223-39. PMID 24372003 DOI: 10.1089/Hum.2012.253  0.01
2014 Downes K, Marcovecchio ML, Clarke P, Cooper JD, Ferreira RC, Howson JM, Jolley J, Nutland S, Stevens HE, Walker NM, Wallace C, Dunger DB, Todd JA. Plasma concentrations of soluble IL-2 receptor α (CD25) are increased in type 1 diabetes and associated with reduced C-peptide levels in young patients. Diabetologia. 57: 366-72. PMID 24264051 DOI: 10.1007/S00125-013-3113-8  0.01
2014 Vernon AC, Crum WR, Lerch JP, Chege W, Natesan S, Modo M, Cooper JD, Williams SC, Kapur S. Reduced cortical volume and elevated astrocyte density in rats chronically treated with antipsychotic drugs-linking magnetic resonance imaging findings to cellular pathology. Biological Psychiatry. 75: 982-90. PMID 24143881 DOI: 10.1016/J.Biopsych.2013.09.012  0.01
2014 Voorhees RA, Cooper JD. Opportunities and barriers to effective planning in higher education: Data sources and techniques Using Data to Improve Higher Education: Research, Policy and Practice. 25-38. DOI: 10.1007/978-94-6209-794-0_3  0.01
2013 Morgan JP, Magee H, Wong A, Nelson T, Koch B, Cooper JD, Weimer JM. A murine model of variant late infantile ceroid lipofuscinosis recapitulates behavioral and pathological phenotypes of human disease. Plos One. 8: e78694. PMID 24223841 DOI: 10.1371/Journal.Pone.0078694  0.01
2013 Kühl TG, Dihanich S, Wong AM, Cooper JD. Regional brain atrophy in mouse models of neuronal ceroid lipofuscinosis: a new rostrocaudal perspective. Journal of Child Neurology. 28: 1117-22. PMID 24014506 DOI: 10.1177/0883073813494479  0.01
2013 Hawkins-Salsbury JA, Cooper JD, Sands MS. Pathogenesis and therapies for infantile neuronal ceroid lipofuscinosis (infantile CLN1 disease). Biochimica Et Biophysica Acta. 1832: 1906-9. PMID 23747979 DOI: 10.1016/j.bbadis.2013.05.026  0.01
2013 Mole SE, Williams RE, Cooper JD. Special issue: molecular basis of the NCLs. Biochimica Et Biophysica Acta. 1832: 1793-4. PMID 23727410 DOI: 10.1016/J.Bbadis.2013.05.025  0.01
2013 Palmer DN, Barry LA, Tyynelä J, Cooper JD. NCL disease mechanisms. Biochimica Et Biophysica Acta. 1832: 1882-93. PMID 23707513 DOI: 10.1016/j.bbadis.2013.05.014  0.01
2013 Mahmood F, Fu S, Cooke J, Wilson SW, Cooper JD, Russell C. A zebrafish model of CLN2 disease is deficient in tripeptidyl peptidase 1 and displays progressive neurodegeneration accompanied by a reduction in proliferation. Brain : a Journal of Neurology. 136: 1488-507. PMID 23587805 DOI: 10.1093/Brain/Awt043  0.01
2013 Pearson FG, Cooper JD. Tribute to Robert Jason Ginsberg (1940-2003). Thoracic Surgery Clinics. 23: xv-xvii. PMID 23566979 DOI: 10.1016/j.thorsurg.2013.01.017  0.01
2013 Groh J, Kühl TG, Ip CW, Nelvagal HR, Sri S, Duckett S, Mirza M, Langmann T, Cooper JD, Martini R. Immune cells perturb axons and impair neuronal survival in a mouse model of infantile neuronal ceroid lipofuscinosis. Brain : a Journal of Neurology. 136: 1083-101. PMID 23485853 DOI: 10.1093/Brain/Awt020  0.01
2013 Vimaleswaran KS, Berry DJ, Lu C, Tikkanen E, Pilz S, Hiraki LT, Cooper JD, Dastani Z, Li R, Houston DK, Wood AR, Michaëlsson K, Vandenput L, Zgaga L, Yerges-Armstrong LM, et al. Causal relationship between obesity and vitamin D status: bi-directional Mendelian randomization analysis of multiple cohorts. Plos Medicine. 10: e1001383. PMID 23393431 DOI: 10.1371/Journal.Pmed.1001383  0.01
2013 Smith KR, Dahl HH, Canafoglia L, Andermann E, Damiano J, Morbin M, Bruni AC, Giaccone G, Cossette P, Saftig P, Grötzinger J, Schwake M, Andermann F, Staropoli JF, Sims KB, ... ... Cooper JD, et al. Cathepsin F mutations cause Type B Kufs disease, an adult-onset neuronal ceroid lipofuscinosis. Human Molecular Genetics. 22: 1417-23. PMID 23297359 DOI: 10.1093/Hmg/Dds558  0.01
2013 Blom T, Schmiedt ML, Wong AM, Kyttälä A, Soronen J, Jauhiainen M, Tyynelä J, Cooper JD, Jalanko A. Exacerbated neuronal ceroid lipofuscinosis phenotype in Cln1/5 double-knockout mice. Disease Models & Mechanisms. 6: 342-57. PMID 23065637 DOI: 10.1242/dmm.010140  0.01
2013 Mitchell JC, McGoldrick P, Vance C, Hortobagyi T, Sreedharan J, Rogelj B, Tudor EL, Smith BN, Klasen C, Miller CC, Cooper JD, Greensmith L, Shaw CE. Overexpression of human wild-type FUS causes progressive motor neuron degeneration in an age- and dose-dependent fashion. Acta Neuropathologica. 125: 273-88. PMID 22961620 DOI: 10.1007/S00401-012-1043-Z  0.01
2012 Campbell JD, McDonough JE, Zeskind JE, Hackett TL, Pechkovsky DV, Brandsma CA, Suzuki M, Gosselink JV, Liu G, Alekseyev YO, Xiao J, Zhang X, Hayashi S, Cooper JD, Timens W, et al. A gene expression signature of emphysema-related lung destruction and its reversal by the tripeptide GHK. Genome Medicine. 4: 67. PMID 22937864 DOI: 10.1186/Gm367  0.01
2012 Cooper JD, Simmonds MJ, Walker NM, Burren O, Brand OJ, Guo H, Wallace C, Stevens H, Coleman G, Franklyn JA, Todd JA, Gough SC. Seven newly identified loci for autoimmune thyroid disease. Human Molecular Genetics. 21: 5202-8. PMID 22922229 DOI: 10.1093/Hmg/Dds357  0.01
2012 Howson JM, Cooper JD, Smyth DJ, Walker NM, Stevens H, She JX, Eisenbarth GS, Rewers M, Todd JA, Akolkar B, Concannon P, Erlich HA, Julier C, Morahan G, Nerup J, et al. Evidence of gene-gene interaction and age-at-diagnosis effects in type 1 diabetes. Diabetes. 61: 3012-7. PMID 22891215 DOI: 10.2337/Db11-1694  0.01
2012 Hu J, Lu JY, Wong AM, Hynan LS, Birnbaum SG, Yilmaz DS, Streit BM, Lenartowicz EM, Thompson TC, Cooper JD, Hofmann SL. Intravenous high-dose enzyme replacement therapy with recombinant palmitoyl-protein thioesterase reduces visceral lysosomal storage and modestly prolongs survival in a preclinical mouse model of infantile neuronal ceroid lipofuscinosis. Molecular Genetics and Metabolism. 107: 213-21. PMID 22704978 DOI: 10.1016/j.ymgme.2012.05.009  0.01
2012 Kovács AD, Saje A, Wong A, Ramji S, Cooper JD, Pearce DA. Age-dependent therapeutic effect of memantine in a mouse model of juvenile Batten disease. Neuropharmacology. 63: 769-75. PMID 22683643 DOI: 10.1016/j.neuropharm.2012.05.040  0.01
2012 Kuronen M, Lehesjoki AE, Jalanko A, Cooper JD, Kopra O. Selective spatiotemporal patterns of glial activation and neuron loss in the sensory thalamocortical pathways of neuronal ceroid lipofuscinosis 8 mice. Neurobiology of Disease. 47: 444-57. PMID 22569358 DOI: 10.1016/J.Nbd.2012.04.018  0.01
2012 Wilkinson FL, Holley RJ, Langford-Smith KJ, Badrinath S, Liao A, Langford-Smith A, Cooper JD, Jones SA, Wraith JE, Wynn RF, Merry CL, Bigger BW. Neuropathology in mouse models of mucopolysaccharidosis type I, IIIA and IIIB. Plos One. 7: e35787. PMID 22558223 DOI: 10.1371/journal.pone.0035787  0.01
2012 Bonner Millar LP, Stripp D, Cooper JD, Both S, James P, Rengan R. Definitive radiotherapy for unresected adenoid cystic carcinoma of the trachea. Chest. 141: 1323-6. PMID 22553266 DOI: 10.1378/chest.11-0925  0.01
2012 Thelen M, Damme M, Da??e M, Schweizer M, Hagel C, Wong AM, Cooper JD, Braulke T, Galliciotti G. Disruption of the autophagy-lysosome pathway is involved in neuropathology of the nclf mouse model of neuronal ceroid lipofuscinosis. Plos One. 7: e35493. PMID 22536393 DOI: 10.1371/journal.pone.0035493  0.01
2012 Wallace C, Rotival M, Cooper JD, Rice CM, Yang JH, McNeill M, Smyth DJ, Niblett D, Cambien F, Tiret L, Todd JA, Clayton DG, Blankenberg S. Statistical colocalization of monocyte gene expression and genetic risk variants for type 1 diabetes. Human Molecular Genetics. 21: 2815-24. PMID 22403184 DOI: 10.1093/Hmg/Dds098  0.01
2012 Wagner JK, Cooper JD, Sterling R, Royal CD. Tilting at windmills no longer: a data-driven discussion of DTC DNA ancestry tests. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 14: 586-93. PMID 22382803 DOI: 10.1038/Gim.2011.77  0.01
2012 Macauley SL, Roberts MS, Wong AM, McSloy F, Reddy AS, Cooper JD, Sands MS. Synergistic effects of central nervous system-directed gene therapy and bone marrow transplantation in the murine model of infantile neuronal ceroid lipofuscinosis. Annals of Neurology. 71: 797-804. PMID 22368049 DOI: 10.1002/ana.23545  0.01
2012 Roberts MS, Macauley SL, Wong AM, Yilmas D, Hohm S, Cooper JD, Sands MS. Combination small molecule PPT1 mimetic and CNS-directed gene therapy as a treatment for infantile neuronal ceroid lipofuscinosis. Journal of Inherited Metabolic Disease. 35: 847-57. PMID 22310926 DOI: 10.1007/s10545-011-9446-x  0.01
2012 Cooper JD, Howson JM, Smyth D, Walker NM, Stevens H, Yang JH, She JX, Eisenbarth GS, Rewers M, Todd JA, Akolkar B, Concannon P, Erlich HA, Julier C, Morahan G, et al. Confirmation of novel type 1 diabetes risk loci in families. Diabetologia. 55: 996-1000. PMID 22278338 DOI: 10.1007/S00125-012-2450-3  0.01
2012 Vernon AC, Natesan S, Crum WR, Cooper JD, Modo M, Williams SC, Kapur S. Contrasting effects of haloperidol and lithium on rodent brain structure: a magnetic resonance imaging study with postmortem confirmation. Biological Psychiatry. 71: 855-63. PMID 22244831 DOI: 10.1016/J.Biopsych.2011.12.004  0.01
2012 Coller KE, Heaton NS, Berger KL, Cooper JD, Saunders JL, Randall G. Molecular determinants and dynamics of hepatitis C virus secretion. Plos Pathogens. 8: e1002466. PMID 22241992 DOI: 10.1371/Journal.Ppat.1002466  0.01
2012 Hunt KA, Smyth DJ, Balschun T, Ban M, Mistry V, Ahmad T, Anand V, Barrett JC, Bhaw-Rosun L, Bockett NA, Brand OJ, Brouwer E, Concannon P, Cooper JD, Dias KR, et al. Rare and functional SIAE variants are not associated with autoimmune disease risk in up to 66,924 individuals of European ancestry. Nature Genetics. 44: 3-5. PMID 22200769 DOI: 10.1038/Ng.1037  0.01
2012 Pressey SN, Smith DA, Wong AM, Platt FM, Cooper JD. Early glial activation, synaptic changes and axonal pathology in the thalamocortical system of Niemann-Pick type C1 mice. Neurobiology of Disease. 45: 1086-100. PMID 22198570 DOI: 10.1016/j.nbd.2011.12.027  0.01
2012 Schmiedt ML, Blom T, Blom T, Kopra O, Wong A, von Schantz-Fant C, Ikonen E, Kuronen M, Jauhiainen M, Cooper JD, Jalanko A. Cln5-deficiency in mice leads to microglial activation, defective myelination and changes in lipid metabolism. Neurobiology of Disease. 46: 19-29. PMID 22182690 DOI: 10.1016/j.nbd.2011.12.009  0.01
2012 Goyal RK, Cooper JD. Meta-analyzing the link between MTHFR C677T genotype and susceptibility to childhood ALL. Pediatric Blood & Cancer. 58: 483-4. PMID 22180054 DOI: 10.1002/pbc.23223  0.01
2012 Tegelberg S, Kopra O, Joensuu T, Cooper JD, Lehesjoki AE. Early microglial activation precedes neuronal loss in the brain of the Cstb-/- mouse model of progressive myoclonus epilepsy, EPM1. Journal of Neuropathology and Experimental Neurology. 71: 40-53. PMID 22157618 DOI: 10.1097/Nen.0B013E31823E68E1  0.01
2012 Rahim AA, Wong AM, Ahmadi S, Hoefer K, Buckley SM, Hughes DA, Nathwani AN, Baker AH, McVey JH, Cooper JD, Waddington SN. In utero administration of Ad5 and AAV pseudotypes to the fetal brain leads to efficient, widespread and long-term gene expression. Gene Therapy. 19: 936-46. PMID 22071970 DOI: 10.1038/gt.2011.157  0.01
2012 Kuronen M, Hermansson M, Manninen O, Zech I, Talvitie M, Laitinen T, Gröhn O, Somerharju P, Eckhardt M, Cooper JD, Lehesjoki AE, Lahtinen U, Kopra O. Galactolipid deficiency in the early pathogenesis of neuronal ceroid lipofuscinosis model Cln8mnd : implications to delayed myelination and oligodendrocyte maturation. Neuropathology and Applied Neurobiology. 38: 471-86. PMID 22044361 DOI: 10.1111/j.1365-2990.2011.01233.x  0.01
2012 Davison LJ, Wallace C, Cooper JD, Cope NF, Wilson NK, Smyth DJ, Howson JM, Saleh N, Al-Jeffery A, Angus KL, Stevens HE, Nutland S, Duley S, Coulson RM, Walker NM, ... ... Cooper J, et al. Long-range DNA looping and gene expression analyses identify DEXI as an autoimmune disease candidate gene. Human Molecular Genetics. 21: 322-33. PMID 21989056 DOI: 10.1093/Hmg/Ddr468  0.01
2012 Cooper JD, Williams RE. Neuronal Ceroid Lipofuscinoses Lysosomal Storage Disorders: a Practical Guide. 137-141. DOI: 10.1002/9781118514672.ch18  0.01
2011 Koch S, Molchanova SM, Wright AK, Edwards A, Cooper JD, Taira T, Gillingwater TH, Tyynelä J. Morphologic and functional correlates of synaptic pathology in the cathepsin D knockout mouse model of congenital neuronal ceroid lipofuscinosis. Journal of Neuropathology and Experimental Neurology. 70: 1089-96. PMID 22082660 DOI: 10.1097/NEN.0b013e318238fc28  0.01
2011 McDonough JE, Yuan R, Suzuki M, Seyednejad N, Elliott WM, Sanchez PG, Wright AC, Gefter WB, Litzky L, Coxson HO, Paré PD, Sin DD, Pierce RA, Woods JC, McWilliams AM, ... ... Cooper JD, et al. Small-airway obstruction and emphysema in chronic obstructive pulmonary disease. The New England Journal of Medicine. 365: 1567-75. PMID 22029978 DOI: 10.1056/NEJMoa1106955  0.01
2011 Smyth DJ, Cooper JD, Howson JM, Clarke P, Downes K, Mistry T, Stevens H, Walker NM, Todd JA. FUT2 nonsecretor status links type 1 diabetes susceptibility and resistance to infection. Diabetes. 60: 3081-4. PMID 22025780 DOI: 10.2337/Db11-0638  0.01
2011 Shah PL, Slebos DJ, Cardoso PF, Cetti E, Voelker K, Levine B, Russell ME, Goldin J, Brown M, Cooper JD, Sybrecht GW. Bronchoscopic lung-volume reduction with Exhale airway stents for emphysema (EASE trial): randomised, sham-controlled, multicentre trial. Lancet (London, England). 378: 997-1005. PMID 21907863 DOI: 10.1016/S0140-6736(11)61050-7  0.01
2011 Prosser HM, Koike-Yusa H, Cooper JD, Law FC, Bradley A. A resource of vectors and ES cells for targeted deletion of microRNAs in mice. Nature Biotechnology. 29: 840-5. PMID 21822254 DOI: 10.1038/nbt.1929  0.01
2011 Raess PW, Cowan SW, Haas AR, Zhang PJ, Litzky LA, Miller WT, Cooper JD, Deshpande CG. Tracheobronchopathia osteochondroplastica presenting as a single dominant tracheal mass. Annals of Diagnostic Pathology. 15: 431-5. PMID 21778098 DOI: 10.1016/J.Anndiagpath.2011.04.009  0.01
2011 Rahim AA, Wong AM, Hoefer K, Buckley SM, Mattar CN, Cheng SH, Chan JK, Cooper JD, Waddington SN. Intravenous administration of AAV2/9 to the fetal and neonatal mouse leads to differential targeting of CNS cell types and extensive transduction of the nervous system. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 25: 3505-18. PMID 21746868 DOI: 10.1096/fj.11-182311  0.01
2011 Irvine EE, Drinkwater L, Radwanska K, Al-Qassab H, Smith MA, O'Brien M, Kielar C, Choudhury AI, Krauss S, Cooper JD, Withers DJ, Giese KP. Insulin receptor substrate 2 is a negative regulator of memory formation. Learning & Memory (Cold Spring Harbor, N.Y.). 18: 375-83. PMID 21597043 DOI: 10.1101/lm.2111311  0.01
2011 Salek RM, Pears MR, Cooper JD, Mitchison HM, Pearce DA, Mortishire-Smith RJ, Griffin JL. A metabolomic comparison of mouse models of the Neuronal Ceroid Lipofuscinoses. Journal of Biomolecular Nmr. 49: 175-84. PMID 21461951 DOI: 10.1007/s10858-011-9491-7  0.01
2011 Cooper JD, Smyth DJ, Walker NM, Stevens H, Burren OS, Wallace C, Greissl C, Ramos-Lopez E, Hyppönen E, Dunger DB, Spector TD, Ouwehand WH, Wang TJ, Badenhoop K, Todd JA. Inherited variation in vitamin D genes is associated with predisposition to autoimmune disease type 1 diabetes. Diabetes. 60: 1624-31. PMID 21441443 DOI: 10.2337/Db10-1656  0.01
2011 Nunes A, Pressey SN, Cooper JD, Soriano S. Loss of amyloid precursor protein in a mouse model of Niemann-Pick type C disease exacerbates its phenotype and disrupts tau homeostasis. Neurobiology of Disease. 42: 349-59. PMID 21303697 DOI: 10.1016/J.Nbd.2011.01.028  0.01
2011 Berman AT, Litzky L, Livolsi V, Singhal S, Kucharczuk JC, Cooper JD, Friedberg JR, Evans TL, Stevenson JP, Metz JM, Hahn SM, Rengan R. Adjuvant radiotherapy for completely resected stage 2 thymoma. Cancer. 117: 3502-8. PMID 21287527 DOI: 10.1002/Cncr.25851  0.01
2011 Farfel-Becker T, Vitner EB, Pressey SN, Eilam R, Cooper JD, Futerman AH. Spatial and temporal correlation between neuron loss and neuroinflammation in a mouse model of neuronopathic Gaucher disease. Human Molecular Genetics. 20: 1375-86. PMID 21252206 DOI: 10.1093/Hmg/Ddr019  0.01
2011 Shah PL, Slebos DJ, Cardoso PF, Cetti EJ, Sybrecht GW, Cooper JD. Design of the exhale airway stents for emphysema (EASE) trial: an endoscopic procedure for reducing hyperinflation. Bmc Pulmonary Medicine. 11: 1. PMID 21214899 DOI: 10.1186/1471-2466-11-1  0.01
2011 Kovács AD, Saje A, Wong A, Szénási G, Kiricsi P, Szabó E, Cooper JD, Pearce DA. Temporary inhibition of AMPA receptors induces a prolonged improvement of motor performance in a mouse model of juvenile Batten disease. Neuropharmacology. 60: 405-9. PMID 20971125 DOI: 10.1016/j.neuropharm.2010.10.010  0.01
2011 Seehafer SS, Ramirez-Montealegre D, Wong AM, Chan CH, Castaneda J, Horak M, Ahmadi SM, Lim MJ, Cooper JD, Pearce DA. Immunosuppression alters disease severity in juvenile Batten disease mice. Journal of Neuroimmunology. 230: 169-72. PMID 20937531 DOI: 10.1016/j.jneuroim.2010.08.024  0.01
2011 Cooper JD, Waser PM, Hellgren EC, Gabor TM, DeWoody JA. Is sexual monomorphism a predictor of polygynandry? Evidence from a social mammal, the collared peccary Behavioral Ecology and Sociobiology. 65: 775-785. DOI: 10.1007/S00265-010-1081-2  0.52
2010 Rahim AA, Wong AM, Buckley SM, Chan JK, David AL, Cooper JD, Coutelle C, Peebles DM, Waddington SN. In utero gene transfer to the mouse nervous system. Biochemical Society Transactions. 38: 1489-93. PMID 21118113 DOI: 10.1042/BST0381489  0.01
2010 Wong AM, Rahim AA, Waddington SN, Cooper JD. Current therapies for the soluble lysosomal forms of neuronal ceroid lipofuscinosis. Biochemical Society Transactions. 38: 1484-8. PMID 21118112 DOI: 10.1042/BST0381484  0.01
2010 Cooper JD. The neuronal ceroid lipofuscinoses: the same, but different? Biochemical Society Transactions. 38: 1448-52. PMID 21118105 DOI: 10.1042/BST0381448  0.01
2010 Pressey SN, O'Donnell KJ, Stauber T, Fuhrmann JC, Tyynelä J, Jentsch TJ, Cooper JD. Distinct neuropathologic phenotypes after disrupting the chloride transport proteins ClC-6 or ClC-7/Ostm1. Journal of Neuropathology and Experimental Neurology. 69: 1228-46. PMID 21107136 DOI: 10.1097/Nen.0B013E3181Ffe742  0.01
2010 Gierada DS, Woods JC, Jacob RE, Bierhals AJ, Choong CK, Bartel ST, Chang YV, Das NA, Hong C, Lutey BA, Ritter JH, Pilgram TK, Cooper JD, Patterson GA, Battafarano RJ, et al. Emphysema quantification in inflation-fixed lungs using low-dose computed tomography and 3He magnetic resonance imaging. Journal of Computer Assisted Tomography. 34: 773-9. PMID 20861785 DOI: 10.1097/Rct.0B013E3181E480F9  0.01
2010 Cooper JD. Randomized clinical trials for new surgical operations: square peg in a round hole? The Journal of Thoracic and Cardiovascular Surgery. 140: 743-6. PMID 20850651 DOI: 10.1016/j.jtcvs.2010.06.037  0.01
2010 Buonocore F, Hill MJ, Campbell CD, Oladimeji PB, Jeffries AR, Troakes C, Hortobagyi T, Williams BP, Cooper JD, Bray NJ. Effects of cis-regulatory variation differ across regions of the adult human brain. Human Molecular Genetics. 19: 4490-6. PMID 20829226 DOI: 10.1093/hmg/ddq380  0.01
2010 Sanchez PG, Kucharczuk JC, Su S, Kaiser LR, Cooper JD. National Emphysema Treatment Trial redux: accentuating the positive. The Journal of Thoracic and Cardiovascular Surgery. 140: 564-72. PMID 20723727 DOI: 10.1016/j.jtcvs.2010.03.050  0.01
2010 Cooper JD. "All that glitters...": evaluating interventions for emphysema. Chest. 138: 243-5. PMID 20682523 DOI: 10.1378/chest.10-0829  0.01
2010 Wang TJ, Zhang F, Richards JB, Kestenbaum B, van Meurs JB, Berry D, Kiel DP, Streeten EA, Ohlsson C, Koller DL, Peltonen L, Cooper JD, O'Reilly PF, Houston DK, Glazer NL, et al. Common genetic determinants of vitamin D insufficiency: a genome-wide association study. Lancet. 376: 180-8. PMID 20541252 DOI: 10.1016/S0140-6736(10)60588-0  0.01
2010 Craddock N, Hurles ME, Cardin N, Pearson RD, Plagnol V, Robson S, Vukcevic D, Barnes C, Conrad DF, Giannoulatou E, Holmes C, Marchini JL, Stirrups K, Tobin MD, ... ... Cooper JD, et al. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls. Nature. 464: 713-20. PMID 20360734 DOI: 10.1038/Nature08979  0.01
2010 Pilgram TK, Quirk JD, Bierhals AJ, Yusen RD, Lefrak SS, Cooper JD, Gierada DS. Accuracy of emphysema quantification performed with reduced numbers of CT sections. Ajr. American Journal of Roentgenology. 194: 585-91. PMID 20173132 DOI: 10.2214/Ajr.09.2709  0.01
2010 Cooper JD, Vitalis R, Waser PM, Gopurenko D, Hellgren EC, Gabor TM, DeWoody JA. Quantifying male-biased dispersal among social groups in the collared peccary (Pecari tajacu) using analyses based on mtDNA variation. Heredity. 104: 79-87. PMID 19639005 DOI: 10.1038/Hdy.2009.102  0.52
2010 Cooper JD, Waser PM, Gopurenko D, Hellgren EC, Gabor TM, Dewoody JA. Measuring sex-biased dispersal in social mammals: Comparisons of nuclear and mitochondrial genes in collared peccaries Journal of Mammalogy. 91: 1413-1424. DOI: 10.1644/09-Mamm-A-313.1  0.52
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