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Bryn Colleen Taylor - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
Computational Chemistry, Markov State Models, GPCRs, Microbiome, Metagenomics, Metabolomics, Machine Learning
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17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Taylor BC, Sheikh Andalibi M, Wandro S, Weldon KC, Sepich-Poore GD, Carpenter CS, Fraraccio S, Franklin D, Iudicello JE, Letendre S, Gianella S, Grant I, Ellis RJ, Heaton RK, Knight R, et al. Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome. Microorganisms. 11. PMID 37110445 DOI: 10.3390/microorganisms11041022  0.321
2023 Koehler Leman J, Szczerbiak P, Renfrew PD, Gligorijevic V, Berenberg D, Vatanen T, Taylor BC, Chandler C, Janssen S, Pataki A, Carriero N, Fisk I, Xavier RJ, Knight R, Bonneau R, et al. Sequence-structure-function relationships in the microbial protein universe. Nature Communications. 14: 2351. PMID 37100781 DOI: 10.1038/s41467-023-37896-w  0.365
2022 Gan JL, Kumar D, Chen C, Taylor BC, Jagger BR, Amaro RE, Lee CT. Benchmarking ensemble docking methods in D3R Grand Challenge 4. Journal of Computer-Aided Molecular Design. PMID 35199221 DOI: 10.1007/s10822-021-00433-2  0.562
2021 Hempel T, Del Razo MJ, Lee CT, Taylor BC, Amaro RE, Noé F. Independent Markov decomposition: Toward modeling kinetics of biomolecular complexes. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34321356 DOI: 10.1073/pnas.2105230118  0.54
2021 Gligorijević V, Renfrew PD, Kosciolek T, Leman JK, Berenberg D, Vatanen T, Chandler C, Taylor BC, Fisk IM, Vlamakis H, Xavier RJ, Knight R, Cho K, Bonneau R. Structure-based protein function prediction using graph convolutional networks. Nature Communications. 12: 3168. PMID 34039967 DOI: 10.1038/s41467-021-23303-9  0.462
2021 Jung CE, Estaki M, Chopyk J, Taylor BC, Gonzalez A, McDonald D, Shin J, Ferrante K, Wasenda E, Lippmann Q, Knight R, Pride D, Lukacz ES. Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection. Female Pelvic Medicine & Reconstructive Surgery. PMID 33978602 DOI: 10.1097/SPV.0000000000001051  0.388
2020 Casalino L, Gaieb Z, Goldsmith JA, Hjorth CK, Dommer AC, Harbison AM, Fogarty CA, Barros EP, Taylor BC, McLellan JS, Fadda E, Amaro RE. Beyond Shielding: The Roles of Glycans in the SARS-CoV-2 Spike Protein. Acs Central Science. 6: 1722-1734. PMID 33140034 DOI: 10.1021/acscentsci.0c01056  0.496
2020 Taylor BC, Weldon KC, Ellis RJ, Franklin D, McDonald D, Humphrey G, Bryant M, Toronczak J, Schwartz T, Iudicello J, Heaton R, Grant I, Gianella S, Letendre S, Swafford A, et al. Reduced Independence in Daily Living Is Associated with the Gut Microbiome in People with HIV and HCV. Msystems. 5. PMID 33051377 DOI: 10.1128/mSystems.00528-20  0.313
2020 Taylor BC, Weldon KC, Ellis RJ, Franklin D, Groth T, Gentry EC, Tripathi A, McDonald D, Humphrey G, Bryant M, Toronczak J, Schwartz T, Oliveira MF, Heaton R, Grant I, et al. Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. Msystems. 5. PMID 32994287 DOI: 10.1128/mSystems.00465-20  0.31
2020 Martino C, Kellman BP, Sandoval DR, Clausen TM, Marotz CA, Song SJ, Wandro S, Zaramela LS, Salido Benítez RA, Zhu Q, Armingol E, Vázquez-Baeza Y, McDonald D, Sorrentino JT, Taylor B, et al. Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity. Biorxiv : the Preprint Server For Biology. PMID 32839779 DOI: 10.1101/2020.08.17.238444  0.361
2020 Casalino L, Gaieb Z, Dommer AC, Harbison AM, Fogarty CA, Barros EP, Taylor BC, Fadda E, Amaro RE. Shielding and Beyond: The Roles of Glycans in SARS-CoV-2 Spike Protein. Biorxiv : the Preprint Server For Biology. PMID 32577644 DOI: 10.1101/2020.06.11.146522  0.491
2020 Taylor BC, Lejzerowicz F, Poirel M, Shaffer JP, Jiang L, Aksenov A, Litwin N, Humphrey G, Martino C, Miller-Montgomery S, Dorrestein PC, Veiga P, Song SJ, McDonald D, Derrien M, et al. Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome. Msystems. 5. PMID 32184365 DOI: 10.1128/mSystems.00901-19  0.602
2020 Litwin N, Taylor B, Lejzerowicz F, Poirel M, Shaffer J, Jiang L, Aksenov A, Humphery G, Martino C, Miller-Montgomery S, Dorrestein P, Veiga P, Song SJ, McDonald D, Derrien M, et al. Consumption of Fermented Plant Foods Is Associated with Systematic Differences in the Human Gut Microbiome and Metabolome Current Developments in Nutrition. 4: 1573-1573. DOI: 10.1093/cdn/nzaa062_030  0.391
2020 Taylor BC, Lee CT, Amaro RE. Using Molecular Simulations to Inform Drug Development Efforts for the GPCR CCR2 Biophysical Journal. 118: 207a. DOI: 10.1016/J.Bpj.2019.11.1242  0.528
2019 Taylor BC, Lee CT, Amaro RE. Structural basis for ligand modulation of the CCR2 conformational landscape. Proceedings of the National Academy of Sciences of the United States of America. PMID 30975755 DOI: 10.1073/Pnas.1814131116  0.572
2018 Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn RA, Sanders JG, et al. Best practices for analysing microbiomes. Nature Reviews. Microbiology. PMID 29795328 DOI: 10.1038/S41579-018-0029-9  0.351
2018 Taylor BC, Kufareva I, Handel T, Amaro RE. Investigating Chemokine Receptor CCR2 Dynamics and Druggability by Ensemble Based Approaches Biophysical Journal. 114: 399a. DOI: 10.1016/J.Bpj.2017.11.2205  0.455
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