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Tatsunori Hashimoto - Publications

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
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8 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Kang D, Sherwood R, Barkal A, Hashimoto T, Engstrom L, Gifford D. DNase-capture reveals differential transcription factor binding modalities. Plos One. 12: e0187046. PMID 29284001 DOI: 10.1371/Journal.Pone.0187046  0.595
2016 Hashimoto TB, Sherwood R, Kang DD, Rajagopal N, Barkal AA, Zeng H, Emons BJ, Srinivasan S, Jaakkola T, Gifford D. A synergistic DNA logic predicts genome-wide chromatin accessibility. Genome Research. PMID 27456004 DOI: 10.1101/Gr.199778.115  0.601
2016 Barkal AA, Srinivasan S, Hashimoto T, Gifford DK, Sherwood RI. Cas9 Functionally Opens Chromatin. Plos One. 11: e0152683. PMID 27031353 DOI: 10.1371/Journal.Pone.0152683  0.587
2016 Hashimoto TB, Alvarez-Melis D, Jaakkola TS. Word Embeddings as Metric Recovery in Semantic Spaces Transactions of the Association For Computational Linguistics. 4: 273-286. DOI: 10.1162/tacl_a_00098  0.467
2015 Zeng H, Hashimoto T, Kang DD, Gifford DK. GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding. Bioinformatics (Oxford, England). PMID 26476779 DOI: 10.1093/bioinformatics/btv565  0.536
2014 Hashimoto TB, Edwards MD, Gifford DK. Universal count correction for high-throughput sequencing. Plos Computational Biology. 10: e1003494. PMID 24603409 DOI: 10.1371/journal.pcbi.1003494  0.509
2014 Sherwood RI, Hashimoto T, O'Donnell CW, Lewis S, Barkal AA, van Hoff JP, Karun V, Jaakkola T, Gifford DK. Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape. Nature Biotechnology. 32: 171-8. PMID 24441470 DOI: 10.1038/Nbt.2798  0.627
2012 Hashimoto T, Jaakkola T, Sherwood R, Mazzoni EO, Wichterle H, Gifford D. Lineage-based identification of cellular states and expression programs. Bioinformatics (Oxford, England). 28: i250-7. PMID 22689769 DOI: 10.1093/Bioinformatics/Bts204  0.564
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