John K. McKay, Ph.D. - Publications

BioAgricultural Sciences Colorado State University, Fort Collins, CO 
Evolutionary Genetics

75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Oakley CG, Schemske DW, McKay JK, Ågren J. Ecological genetics of local adaptation in Arabidopsis: An 8-year field experiment. Molecular Ecology. PMID 37317048 DOI: 10.1111/mec.17045  0.495
2022 Woods P, Price N, Matthews P, McKay JK. Genome-wide polymorphism and genic selection in feral and domesticated lineages of Cannabis sativa. G3 (Bethesda, Md.). PMID 36018239 DOI: 10.1093/g3journal/jkac209  0.4
2022 Woods P, Lehner KR, Hein K, Mullen JL, McKay JK. Root Pulling Force Across Drought in Maize Reveals Genotype by Environment Interactions and Candidate Genes. Frontiers in Plant Science. 13: 883209. PMID 35498695 DOI: 10.3389/fpls.2022.883209  0.349
2021 Liu J, Rana K, McKay J, Xiong Z, Yu F, Mei J, Qian W. Investigating genetic relationship of with via virtual allopolyploidy and hexaploidy strategy. Molecular Breeding : New Strategies in Plant Improvement. 41: 5. PMID 37309524 DOI: 10.1007/s11032-020-01197-7  0.413
2021 Woods P, Campbell BJ, Nicodemus TJ, Cahoon EB, Mullen JL, McKay JK. Quantitative Trait Loci Controlling Agronomic and Biochemical Traits in Cannabis sativa. Genetics. PMID 34173826 DOI: 10.1093/genetics/iyab099  0.527
2021 Li X, Guo T, Wang J, Bekele W, Sukumaran S, Vanous AE, McNellie JP, Cortes LT, Lopes M, Lamkey KR, Westgate ME, McKay J, Archontoulis SV, Reynolds MP, Tinker N, et al. An Integrated Framework Reinstating the Environmental Dimension for GWAS and Genomic Selection in Crops. Molecular Plant. PMID 33713844 DOI: 10.1016/j.molp.2021.03.010  0.431
2021 Rogers AR, Dunne JC, Romay C, Bohn M, Buckler ES, Ciampitti IA, Edwards J, Ertl D, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Hood E, Hooker DC, Knoll J, ... ... McKay J, et al. The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment. G3 (Bethesda, Md.). 11. PMID 33585867 DOI: 10.1093/g3journal/jkaa050  0.429
2021 Monroe JG, McKay JK, Weigel D, Flood PJ. The population genomics of adaptive loss of function. Heredity. PMID 33574599 DOI: 10.1038/s41437-021-00403-2  0.429
2020 McFarland BA, AlKhalifah N, Bohn M, Bubert J, Buckler ES, Ciampitti I, Edwards J, Ertl D, Gage JL, Falcon CM, Flint-Garcia S, Gore MA, Graham C, Hirsch CN, Holland JB, ... ... McKay J, et al. Maize genomes to fields (G2F): 2014-2017 field seasons: genotype, phenotype, climatic, soil, and inbred ear image datasets. Bmc Research Notes. 13: 71. PMID 32051026 DOI: 10.1186/S13104-020-4922-8  0.428
2019 Heun JT, Attalah S, French AN, Lehner KR, McKay JK, Mullen JL, Ottman MJ, Andrade-Sanchez P. Deployment of Lidar from a Ground Platform: Customizing a Low-Cost, Information-Rich and User-Friendly Application for Field Phenomics Research. Sensors (Basel, Switzerland). 19. PMID 31817334 DOI: 10.3390/S19245358  0.457
2019 Monroe JG, Gill B, Turner KG, McKay JK. Drought regimens predict life history strategies in Heliophila. The New Phytologist. PMID 31087648 DOI: 10.1111/Nph.15919  0.371
2018 Gomola CE, McKay JK, Wallenstein MD, Wagg C, O'Brien MJ. Within-species trade-offs in plant-stimulated soil enzyme activity and growth, flowering, and seed size. Ecology and Evolution. 8: 11717-11724. PMID 30598769 DOI: 10.1002/Ece3.4623  0.313
2018 Monroe JG, Powell T, Price N, Mullen JL, Howard A, Evans K, Lovell JT, McKay JK. Drought adaptation in by extensive genetic loss-of-function. Elife. 7. PMID 30520727 DOI: 10.7554/Elife.41038  0.76
2018 Price N, Moyers BT, Lopez L, Lasky JR, Monroe JG, Mullen JL, Oakley CG, Lin J, Ågren J, Schrider DR, Kern AD, McKay JK. Combining population genomics and fitness QTLs to identify the genetics of local adaptation in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29686078 DOI: 10.1073/Pnas.1719998115  0.812
2018 Monroe JG, Powell T, Price N, Mullen JL, Howard A, Evans K, Lovell JT, McKay JK. Author response: Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function Elife. DOI: 10.7554/Elife.41038.021  0.724
2017 Monroe JG, Allen ZA, Tanger P, Mullen JL, Lovell JT, Moyers BT, Whitley D, McKay JK. TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps. Biodata Mining. 10: 38. PMID 29270228 DOI: 10.1186/S13040-017-0158-0  0.802
2017 Pater D, Mullen JL, McKay JK, Schroeder JI. Screening for Natural Variation in Water Use Efficiency Traits in a Diversity Set of Brassica napus L. Identifies Candidate Variants in Photosynthetic Assimilation. Plant & Cell Physiology. 58: 1700-1709. PMID 29048601 DOI: 10.1093/Pcp/Pcx108  0.464
2017 Moyers BT, Morrell PL, McKay JK. Genetic costs of domestication and improvement. The Journal of Heredity. PMID 28992310 DOI: 10.1093/Jhered/Esx069  0.773
2017 Tanger P, Klassen S, Mojica JP, Lovell JT, Moyers BT, Baraoidan M, Naredo ME, McNally KL, Poland J, Bush DR, Leung H, Leach JE, McKay JK. Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice. Scientific Reports. 7: 42839. PMID 28220807 DOI: 10.1038/Srep42839  0.782
2017 Lovell JT, Williamson RJ, Wright SI, McKay JK, Sharbel TF. Mutation accumulation in an asexual relative of Arabidopsis. Plos Genetics. 13: e1006550. PMID 28068346 DOI: 10.1371/Journal.Pgen.1006550  0.734
2017 Gomola CE, Espeland EK, McKay JK. Genetic lineages of the invasive Aegilops triuncialis differ in competitive response to neighboring grassland species Biological Invasions. 19: 469-478. DOI: 10.1007/S10530-016-1366-0  0.438
2016 Mojica JP, Mullen J, Lovell JT, Monroe JG, Paul JR, Oakley CG, McKay JK. Genetics of water use physiology in locally adapted Arabidopsis thaliana. Plant Science : An International Journal of Experimental Plant Biology. 251: 12-22. PMID 27593459 DOI: 10.1016/J.Plantsci.2016.03.015  0.8
2016 Monroe JG, McGovern C, Lasky JR, Grogan K, Beck J, McKay JK. Adaptation to warmer climates by parallel functional evolution of CBF genes in Arabidopsis thaliana. Molecular Ecology. PMID 27247130 DOI: 10.1111/Mec.13711  0.44
2016 Zhu M, Monroe JG, Suhail Y, Villiers F, Mullen J, Pater D, Hauser F, Jeon BW, Bader JS, Kwak JM, Schroeder JI, McKay JK, Assmann SM. Molecular and systems approaches towards drought-tolerant canola crops. The New Phytologist. PMID 26879345 DOI: 10.1111/Nph.13866  0.488
2016 Fletcher RS, Herrmann D, Mullen JL, Li Q, Schrider DR, Price N, Lin J, Grogan K, Kern A, McKay JK. Identification of Polymorphisms Associated with Drought Adaptation QTL in Brassica napus by Resequencing. G3 (Bethesda, Md.). PMID 26801646 DOI: 10.1534/G3.115.021279  0.7
2015 Lovell JT, McKay JK. Ecological genetics of range size variation in Boechera spp. (Brassicaceae). Ecology and Evolution. 5: 4962-4975. PMID 26640674 DOI: 10.1002/Ece3.1746  0.742
2015 Lovell JT, Mullen JL, Lowry DB, Awole K, Richards JH, Sen S, Verslues PE, Juenger TE, McKay JK. Exploiting Differential Gene Expression and Epistasis to Discover Candidate Genes for Drought-Associated QTLs in Arabidopsis thaliana. The Plant Cell. 27: 969-83. PMID 25873386 DOI: 10.1105/Tpc.15.00122  0.821
2015 Shafer AB, Wolf JB, Alves PC, Bergström L, Bruford MW, Brännström I, Colling G, Dalén L, De Meester L, Ekblom R, Fawcett KD, Fior S, Hajibabaei M, Hill JA, Hoezel AR, ... ... McKay JK, et al. Genomics and the challenging translation into conservation practice. Trends in Ecology & Evolution. 30: 78-87. PMID 25534246 DOI: 10.1016/J.Tree.2014.11.009  0.651
2015 Fletcher RS, Mullen JL, Heiliger A, McKay JK. QTL analysis of root morphology, flowering time, and yield reveals trade-offs in response to drought in Brassica napus. Journal of Experimental Botany. 66: 245-56. PMID 25371500 DOI: 10.1093/Jxb/Eru423  0.729
2015 Reuning GA, Bauerle WL, Mullen JL, McKay JK. Combining quantitative trait loci analysis with physiological models to predict genotype-specific transpiration rates. Plant, Cell & Environment. 38: 710-7. PMID 25124388 DOI: 10.1111/Pce.12429  0.522
2015 Tanger P, Vega-Sánchez ME, Fleming M, Tran K, Singh S, Abrahamson JB, Jahn CE, Santoro N, Naredo EB, Baraoidan M, Danku JMC, Salt DE, McNally KL, Simmons BA, Ronald PC, ... ... McKay JK, et al. Cell Wall Composition and Bioenergy Potential of Rice Straw Tissues Are Influenced by Environment, Tissue Type, and Genotype Bioenergy Research. 8: 1165-1182. DOI: 10.1007/S12155-014-9573-Y  0.399
2015 Becker SR, Byrne PF, Reid SD, Bauerle WL, McKay JK, Haley SD. Root traits contributing to drought tolerance of synthetic hexaploid wheat in a greenhouse study Euphytica. DOI: 10.1007/S10681-015-1574-1  0.394
2014 Kenney AM, McKay JK, Richards JH, Juenger TE. Direct and indirect selection on flowering time, water-use efficiency (WUE, δ (13)C), and WUE plasticity to drought in Arabidopsis thaliana. Ecology and Evolution. 4: 4505-21. PMID 25512847 DOI: 10.1002/Ece3.1270  0.727
2014 Lovell JT, Grogan K, Sharbel TF, McKay JK. Mating system and environmental variation drive patterns of adaptation in Boechera spatifolia (Brassicaceae). Molecular Ecology. 23: 4486-97. PMID 25112786 DOI: 10.1111/Mec.12879  0.803
2014 Lasky JR, Des Marais DL, Lowry DB, Povolotskaya I, McKay JK, Richards JH, Keitt TH, Juenger TE. Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana. Molecular Biology and Evolution. 31: 2283-96. PMID 24850899 DOI: 10.1093/Molbev/Msu170  0.685
2014 Des Marais DL, Auchincloss LC, Sukamtoh E, McKay JK, Logan T, Richards JH, Juenger TE. Variation in MPK12 affects water use efficiency in Arabidopsis and reveals a pleiotropic link between guard cell size and ABA response. Proceedings of the National Academy of Sciences of the United States of America. 111: 2836-41. PMID 24550314 DOI: 10.1073/Pnas.1321429111  0.728
2014 Easlon HM, Nemali KS, Richards JH, Hanson DT, Juenger TE, McKay JK. The physiological basis for genetic variation in water use efficiency and carbon isotope composition in Arabidopsis thaliana. Photosynthesis Research. 119: 119-29. PMID 23893317 DOI: 10.1007/S11120-013-9891-5  0.688
2013 Ã…grena J, Oakley CG, McKay JK, Lovell JT, Schemske DW. Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 110: 21077-82. PMID 24324156 DOI: 10.1073/Pnas.1316773110  0.783
2013 Fletcher RS, Mullen JL, Yoder S, Bauerle WL, Reuning G, Sen S, Meyer E, Juenger TE, McKay JK. Development of a next-generation NIL library in Arabidopsis thaliana for dissecting complex traits. Bmc Genomics. 14: 655. PMID 24063355 DOI: 10.1186/1471-2164-14-655  0.779
2013 Lowry DB, Logan TL, Santuari L, Hardtke CS, Richards JH, DeRose-Wilson LJ, McKay JK, Sen S, Juenger TE. Expression quantitative trait locus mapping across water availability environments reveals contrasting associations with genomic features in Arabidopsis. The Plant Cell. 25: 3266-79. PMID 24045022 DOI: 10.1105/Tpc.113.115352  0.68
2013 Lovell JT, Juenger TE, Michaels SD, Lasky JR, Platt A, Richards JH, Yu X, Easlon HM, Sen S, McKay JK. Pleiotropy of FRIGIDA enhances the potential for multivariate adaptation. Proceedings. Biological Sciences / the Royal Society. 280: 20131043. PMID 23698015 DOI: 10.1098/Rspb.2013.1043  0.815
2013 Mei J, Ding Y, Lu K, Wei D, Liu Y, Disi JO, Li J, Liu L, Liu S, McKay J, Qian W. Identification of genomic regions involved in resistance against Sclerotinia sclerotiorum from wild Brassica oleracea. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 126: 549-56. PMID 23096003 DOI: 10.1007/S00122-012-2000-X  0.397
2013 Enjalbert JN, Zheng S, Johnson JJ, Mullen JL, Byrne PF, McKay JK. Brassicaceae germplasm diversity for agronomic and seed quality traits under drought stress Industrial Crops and Products. 47: 176-185. DOI: 10.1016/J.Indcrop.2013.02.037  0.376
2013 Econopouly BF, McKay JK, Westra P, Reid SD, Helm AL, Byrne PF. Phenotypic diversity of Aegilops cylindrica (jointed goatgrass) accessions from the western United States under irrigated and dryland conditions Agriculture, Ecosystems and Environment. 164: 244-51. DOI: 10.1016/J.Agee.2012.10.005  0.489
2013 Rice KJ, Gerlach JD, Dyer AR, McKay JK. Evolutionary ecology along invasion fronts of the annual grass Aegilops triuncialis Biological Invasions. 15: 2531-2545. DOI: 10.1007/S10530-013-0471-6  0.488
2012 Lasky JR, Des Marais DL, McKay JK, Richards JH, Juenger TE, Keitt TH. Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate. Molecular Ecology. 21: 5512-29. PMID 22857709 DOI: 10.1111/J.1365-294X.2012.05709.X  0.691
2012 Funk WC, McKay JK, Hohenlohe PA, Allendorf FW. Harnessing genomics for delineating conservation units. Trends in Ecology & Evolution. 27: 489-96. PMID 22727017 DOI: 10.1016/J.Tree.2012.05.012  0.571
2012 Wang S, Meyer E, McKay JK, Matz MV. 2b-RAD: a simple and flexible method for genome-wide genotyping. Nature Methods. 9: 808-10. PMID 22609625 DOI: 10.1038/Nmeth.2023  0.441
2012 Des Marais DL, McKay JK, Richards JH, Sen S, Wayne T, Juenger TE. Physiological genomics of response to soil drying in diverse Arabidopsis accessions. The Plant Cell. 24: 893-914. PMID 22408074 DOI: 10.1105/Tpc.112.096180  0.694
2011 McKay JK, Leach JE. Linkage illuminates a complex genome. Nature Biotechnology. 29: 717-8. PMID 21822248 DOI: 10.1038/Nbt.1945  0.37
2011 Jahn CE, Mckay JK, Mauleon R, Stephens J, McNally KL, Bush DR, Leung H, Leach JE. Genetic variation in biomass traits among 20 diverse rice varieties. Plant Physiology. 155: 157-68. PMID 21062890 DOI: 10.1104/Pp.110.165654  0.555
2011 Econopouly BF, McKay JK, Westra P, Lapitan NLV, Chapman PL, Byrne PF. Backcrossing provides an avenue for gene introgression from wheat to jointed goatgrass (aegilops cylindrica) in the U.S. Great plains Weed Science. 59: 188-194. DOI: 10.1614/Ws-D-10-00141.1  0.352
2010 Dyer AR, Brown CS, Espeland EK, McKay JK, Meimberg H, Rice KJ. The role of adaptive trans-generational plasticity in biological invasions of plants. Evolutionary Applications. 3: 179-92. PMID 25567918 DOI: 10.1111/J.1752-4571.2010.00118.X  0.416
2010 Meimberg H, Milan NF, Karatassiou M, Espeland EK, McKay JK, Rice KJ. Patterns of introduction and adaptation during the invasion of Aegilops triuncialis (Poaceae) into Californian serpentine soils. Molecular Ecology. 19: 5308-19. PMID 20977511 DOI: 10.1111/J.1365-294X.2010.04875.X  0.432
2010 Juenger TE, Sen S, Bray E, Stahl E, Wayne T, McKay J, Richards JH. Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana. Plant, Cell & Environment. 33: 1268-84. PMID 20302603 DOI: 10.1111/J.1365-3040.2010.02146.X  0.706
2009 Meimberg H, Rice KJ, Milan NF, Njoku CC, McKay JK. Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae). American Journal of Botany. 96: 1262-73. PMID 21628275 DOI: 10.3732/Ajb.0800345  0.419
2008 McKay JK, Stinchcombe JR. Ecological genomics of model eukaryotes. Evolution; International Journal of Organic Evolution. 62: 2953-7. PMID 19055681 DOI: 10.1111/J.1558-5646.2008.00536.X  0.352
2008 McKay JK, Richards JH, Nemali KS, Sen S, Mitchell-Olds T, Boles S, Stahl EA, Wayne T, Juenger TE. Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, KAS-1 x TSU-1. Evolution; International Journal of Organic Evolution. 62: 3014-26. PMID 18691264 DOI: 10.1111/J.1558-5646.2008.00474.X  0.793
2008 Christman MA, Richards JH, McKay JK, Stahl EA, Juenger TE, Donovan LA. Genetic variation in Arabidopsis thaliana for night-time leaf conductance. Plant, Cell & Environment. 31: 1170-8. PMID 18510710 DOI: 10.1111/J.1365-3040.2008.01833.X  0.702
2008 Lau JA, McCall AC, Davies KF, McKay JK, Wright JW. Herbivores and edaphic factors constrain the realized niche of a native plant. Ecology. 89: 754-62. PMID 18459338 DOI: 10.1890/07-0591.1  0.354
2007 Ghalambor CK, McKay JK, Carroll SP, Reznick DN. Adaptive versus non-adaptive phenotypic plasticity and the potential for contemporary adaptation in new environments Functional Ecology. 21: 394-407. DOI: 10.1111/J.1365-2435.2007.01283.X  0.495
2006 Wright JW, Davies KF, Lau JA, McCall AC, McKay JK. Experimental verification of ecological niche modeling in a heterogeneous environment. Ecology. 87: 2433-9. PMID 17089652 DOI: 10.1890/0012-9658(2006)87[2433:Evoenm]2.0.Co;2  0.353
2006 Meimberg H, Abele T, Bräuchler C, McKay JK, Pérez de Paz PL, Heubl G. Molecular evidence for adaptive radiation of Micromeria Benth. (Lamiaceae) on the Canary Islands as inferred from chloroplast and nuclear DNA sequences and ISSR fingerprint data Molecular Phylogenetics and Evolution. 41: 566-578. PMID 16839782 DOI: 10.1016/J.Ympev.2006.05.037  0.32
2006 Juenger TE, Wayne T, Boles S, Symonds VV, McKay J, Coughlan SJ. Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression. Molecular Ecology. 15: 1351-65. PMID 16626458 DOI: 10.1111/J.1365-294X.2006.02774.X  0.698
2006 Meimberg H, Hammond JI, Jorgensen CM, Park TW, Gerlach JD, Rice KJ, McKay JK. Molecular evidence for an extreme genetic bottleneck during introduction of an invading grass to California Biological Invasions. 8: 1355-1366. DOI: 10.1007/S10530-005-2463-7  0.496
2005 McKay JK, Christian CE, Harrison S, Rice KJ. "How local is local?" - A review of practical and conceptual issues in the genetics of restoration Restoration Ecology. 13: 432-440. DOI: 10.1111/J.1526-100X.2005.00058.X  0.472
2005 Juenger TE, Mckay JK, Hausmann N, Keurentjes JJB, Sen S, Stowe KA, Dawson TE, Simms EL, Richards JH. Identification and characterization of QTL underlying wholeplant physiology in Arabidopsis thaliana: δ13C, stomatal conductance and transpiration efficiency Plant, Cell and Environment. 28: 697-708. DOI: 10.1111/J.1365-3040.2004.01313.X  0.717
2004 Martin PR, McKay JK. Latitudinal variation in genetic divergence of populations and the potential for future speciation. Evolution; International Journal of Organic Evolution. 58: 938-45. PMID 15212375 DOI: 10.1111/J.0014-3820.2004.Tb00428.X  0.485
2003 McKay JK, Richards JH, Mitchell-Olds T. Genetics of drought adaptation in Arabidopsis thaliana: I. Pleiotropy contributes to genetic correlations among ecological traits. Molecular Ecology. 12: 1137-51. PMID 12694278 DOI: 10.1046/J.1365-294X.2003.01833.X  0.7
2002 Sexton JP, McKay JK, Sala A. Plasticity and genetic diversity may allow saltcedar to invade cold climates in North America Ecological Applications. 12: 1652-1660. DOI: 10.1890/1051-0761(2002)012[1652:Pagdma]2.0.Co;2  0.571
2002 Latta RG, McKay JK. Genetic population divergence: markers and traits Trends in Ecology & Evolution. 17: 501-502. DOI: 10.1016/S0169-5347(02)02601-0  0.539
2002 McKay JK, Latta RG. Adaptive population divergence: Markers, QTL and traits Trends in Ecology and Evolution. 17: 285-291. DOI: 10.1016/S0169-5347(02)02478-3  0.5
2002 Latta RG, McKay JK. Genetic population divergence: Markers and traits [1] (multiple letters) Trends in Ecology and Evolution. 17: 501-502.  0.449
2001 McKay JK, Bishop JG, Lin JZ, Richards JH, Sala A, Mitchell-Olds T. Local adaptation across a climatic gradient despite small effective population size in the rare sapphire rockcress Proceedings of the Royal Society B: Biological Sciences. 268: 1715-1721. PMID 11506685 DOI: 10.1098/Rspb.2001.1715  0.804
1998 Bradshaw HD, Otto KG, Frewen BE, McKay JK, Schemske DW. Quantitative trait loci affecting differences in floral morphology between two species of monkeyflower (Mimulus). Genetics. 149: 367-82. PMID 9584110  0.421
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