Year |
Citation |
Score |
2023 |
Díez-Villanueva A, Martín B, Moratalla-Navarro F, Morón-Duran FD, Galván-Femenía I, Obón-Santacana M, Carreras A, de Cid R, Peinado MA, Moreno V. Identification of intergenerational epigenetic inheritance by whole genome DNA methylation analysis in trios. Scientific Reports. 13: 21266. PMID 38042866 DOI: 10.1038/s41598-023-48517-3 |
0.377 |
|
2020 |
Díez-Villanueva A, Sanz-Pamplona R, Carreras-Torres R, Moratalla-Navarro F, Alonso MH, Paré-Brunet L, Aussó S, Guinó E, Solé X, Cordero D, Salazar R, Berdasco M, Peinado MA, Moreno V. DNA methylation events in transcription factors and gene expression changes in colon cancer. Epigenomics. 12: 1593-1610. PMID 32957849 DOI: 10.2217/epi-2020-0029 |
0.381 |
|
2020 |
Martín B, Pappa S, Díez-Villanueva A, Mallona I, Custodio J, Barrero MJ, Peinado MA, Jordà M. Tissue and cancer-specific expression of DIEXF is epigenetically mediated by an Alu repeat. Epigenetics. 1-15. PMID 32041475 DOI: 10.1080/15592294.2020.1722398 |
0.758 |
|
2019 |
Tao Y, Kang B, Petkovich DA, Bhandari YR, In J, Stein-O'Brien G, Kong X, Xie W, Zachos N, Maegawa S, Vaidya H, Brown S, Chiu Yen RW, Shao X, Thakor J, ... ... Peinado MA, et al. Aging-like Spontaneous Epigenetic Silencing Facilitates Wnt Activation, Stemness, and Braf-Induced Tumorigenesis. Cancer Cell. 35: 315-328.e6. PMID 30753828 DOI: 10.1016/J.Ccell.2019.01.005 |
0.712 |
|
2018 |
Buj R, Mallona I, Díez-Villanueva A, Zafon C, Mate JL, Roca M, Puig-Domingo M, Reverter JL, Mauricio D, Peinado MA, Jordà M. Kallikreins Stepwise Scoring Reveals Three Subtypes of Papillary Thyroid Cancer with Prognostic Implications. Thyroid : Official Journal of the American Thyroid Association. 28: 601-612. PMID 29635968 DOI: 10.1089/thy.2017.0501 |
0.68 |
|
2018 |
Mallona I, Sierco A, Peinado MA. The Pancancer DNA Methylation Trackhub: A Window to The Cancer Genome Atlas Epigenomics Data. Methods in Molecular Biology (Clifton, N.J.). 1766: 123-135. PMID 29605850 DOI: 10.1007/978-1-4939-7768-0_7 |
0.762 |
|
2017 |
Mallona I, Díez-Villanueva A, Martín B, Peinado MA. Chainy: an universal tool for standardized relative quantification in real-time PCR. Bioinformatics (Oxford, England). 33: 1411-1413. PMID 28453678 DOI: 10.1093/bioinformatics/btw839 |
0.697 |
|
2017 |
Mallona I, Díez-Villanueva A, Martín B, Peinado MA. Chainy: an universal tool for standardized relative quantification in real-time PCR. Bioinformatics (Oxford, England). PMID 28419190 DOI: 10.1093/bioinformatics/btx113 |
0.667 |
|
2017 |
Mallona I, Peinado MA. Truke, a web tool to check for and handle excel misidentified gene symbols. Bmc Genomics. 18: 242. PMID 28327106 DOI: 10.1186/s12864-017-3631-8 |
0.691 |
|
2016 |
Jordà M, Díez-Villanueva A, Mallona I, Martín B, Lois S, Barrera V, Esteller M, Vavouri T, Peinado MA. The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells. Genome Research. PMID 27999094 DOI: 10.1101/Gr.207522.116 |
0.752 |
|
2016 |
Suelves M, Carrió E, Núñez-Álvarez Y, Peinado MA. DNA methylation dynamics in cellular commitment and differentiation. Briefings in Functional Genomics. 15: 443-453. PMID 27416614 DOI: 10.1093/bfgp/elw017 |
0.42 |
|
2016 |
Buj R, Mallona I, Díez-Villanueva A, Barrera V, Mauricio D, Puig-Domingo M, Reverter JL, Matias-Guiu X, Azuara D, Ramírez JL, Alonso S, Rosell R, Capellà G, Perucho M, Robledo M, ... Peinado MA, et al. Quantification of unmethylated Alu (QUAlu): a tool to assess global hypomethylation in routine clinical samples. Oncotarget. 7: 10536-46. PMID 26859682 DOI: 10.18632/oncotarget.7233 |
0.729 |
|
2016 |
Mallona I, Jordà M, Peinado MA. A knowledgebase of the human Alu repetitive elements. Journal of Biomedical Informatics. 60: 77-83. PMID 26827622 DOI: 10.1016/j.jbi.2016.01.010 |
0.72 |
|
2015 |
Díez-Villanueva A, Mallona I, Peinado MA. Wanderer, an interactive viewer to explore DNA methylation and gene expression data in human cancer. Epigenetics & Chromatin. 8: 22. PMID 26113876 DOI: 10.1186/s13072-015-0014-8 |
0.755 |
|
2015 |
Forn M, Díez-Villanueva A, Merlos-Suárez A, Muñoz M, Lois S, Carriò E, Jordà M, Bigas A, Batlle E, Peinado MA. Overlapping DNA methylation dynamics in mouse intestinal cell differentiation and early stages of malignant progression. Plos One. 10: e0123263. PMID 25933092 DOI: 10.1371/journal.pone.0123263 |
0.383 |
|
2015 |
Carrió E, Díez-Villanueva A, Lois S, Mallona I, Cases I, Forn M, Peinado MA, Suelves M. Deconstruction of DNA methylation patterns during myogenesis reveals specific epigenetic events in the establishment of the skeletal muscle lineage. Stem Cells (Dayton, Ohio). 33: 2025-36. PMID 25801824 DOI: 10.1002/stem.1998 |
0.705 |
|
2014 |
Mallona I, Díez-Villanueva A, Peinado MA. Methylation plotter: a web tool for dynamic visualization of DNA methylation data. Source Code For Biology and Medicine. 9: 11. PMID 25260021 DOI: 10.1186/1751-0473-9-11 |
0.719 |
|
2014 |
Mancikova V, Buj R, Castelblanco E, Inglada-Pérez L, Diez A, de Cubas AA, Curras-Freixes M, Maravall FX, Mauricio D, Matias-Guiu X, Puig-Domingo M, Capel I, Bella MR, Lerma E, Castella E, ... ... Peinado MÁ, et al. DNA methylation profiling of well-differentiated thyroid cancer uncovers markers of recurrence free survival. International Journal of Cancer. Journal International Du Cancer. 135: 598-610. PMID 24382797 DOI: 10.1002/ijc.28703 |
0.342 |
|
2012 |
Barrera V, Peinado MA. Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale. Nucleic Acids Research. 40: 11490-8. PMID 23066096 DOI: 10.1093/nar/gks928 |
0.35 |
|
2011 |
Mayor R, Muñoz M, Coolen MW, Custodio J, Esteller M, Clark SJ, Peinado MA. Dynamics of bivalent chromatin domains upon drug induced reactivation and resilencing in cancer cells. Epigenetics : Official Journal of the Dna Methylation Society. 6: 1138-48. PMID 21852760 DOI: 10.4161/Epi.6.9.16066 |
0.371 |
|
2011 |
Devaney J, Stirzaker C, Qu W, Song JZ, Statham AL, Patterson KI, Horvath LG, Tabor B, Coolen MW, Hulf T, Kench JG, Henshall SM, Pe Benito R, Haynes AM, Mayor R, ... Peinado MA, et al. Epigenetic deregulation across chromosome 2q14.2 differentiates normal from prostate cancer and provides a regional panel of novel DNA methylation cancer biomarkers. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 20: 148-59. PMID 21098650 DOI: 10.1158/1055-9965.EPI-10-0719 |
0.348 |
|
2010 |
Azuara D, Rodriguez-Moranta F, de Oca J, Soriano-Izquierdo A, Mora J, Guardiola J, Biondo S, Blanco I, Peinado MA, Moreno V, Esteller M, Capellá G. Novel methylation panel for the early detection of colorectal tumors in stool DNA. Clinical Colorectal Cancer. 9: 168-76. PMID 20643622 DOI: 10.3816/Ccc.2010.N.023 |
0.317 |
|
2010 |
Jordà M, Peinado MA. Methods for DNA methylation analysis and applications in colon cancer. Mutation Research. 693: 84-93. PMID 20599551 DOI: 10.1016/j.mrfmmm.2010.06.010 |
0.46 |
|
2010 |
Javierre BM, Fernandez AF, Richter J, Al-Shahrour F, Martin-Subero JI, Rodriguez-Ubreva J, Berdasco M, Fraga MF, O'Hanlon TP, Rider LG, Jacinto FV, Lopez-Longo FJ, Dopazo J, Forn M, Peinado MA, et al. Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus. Genome Research. 20: 170-9. PMID 20028698 DOI: 10.1101/Gr.100289.109 |
0.33 |
|
2009 |
Jordà M, Rodríguez J, Frigola J, Peinado MA. Analysis of DNA methylation by amplification of intermethylated sites (AIMS). Methods in Molecular Biology (Clifton, N.J.). 507: 107-16. PMID 18987810 DOI: 10.1007/978-1-59745-522-0_9 |
0.416 |
|
2008 |
Rodriguez J, Muñoz M, Vives L, Frangou CG, Groudine M, Peinado MA. Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 19809-14. PMID 19060200 DOI: 10.1073/pnas.0810133105 |
0.396 |
|
2008 |
Rodriguez J, Vives L, Jordà M, Morales C, Muñoz M, Vendrell E, Peinado MA. Genome-wide tracking of unmethylated DNA Alu repeats in normal and cancer cells. Nucleic Acids Research. 36: 770-84. PMID 18084025 DOI: 10.1093/nar/gkm1105 |
0.434 |
|
2006 |
Wang Y, Jorda M, Jones PL, Maleszka R, Ling X, Robertson HM, Mizzen CA, Peinado MA, Robinson GE. Functional CpG methylation system in a social insect. Science (New York, N.Y.). 314: 645-7. PMID 17068262 DOI: 10.1126/Science.1135213 |
0.381 |
|
2006 |
Rodriguez J, Frigola J, Vendrell E, Risques RA, Fraga MF, Morales C, Moreno V, Esteller M, Capellà G, Ribas M, Peinado MA. Chromosomal instability correlates with genome-wide DNA demethylation in human primary colorectal cancers. Cancer Research. 66: 8462-9468. PMID 16951157 DOI: 10.1158/0008-5472.Can-06-0293 |
0.37 |
|
2006 |
Frigola J, Song J, Stirzaker C, Hinshelwood RA, Peinado MA, Clark SJ. Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band. Nature Genetics. 38: 540-9. PMID 16642018 DOI: 10.1038/ng1781 |
0.4 |
|
2005 |
Frigola J, Muñoz M, Clark SJ, Moreno V, Capellà G, Peinado MA. Hypermethylation of the prostacyclin synthase (PTGIS) promoter is a frequent event in colorectal cancer and associated with aneuploidy. Oncogene. 24: 7320-6. PMID 16007128 DOI: 10.1038/sj.onc.1208883 |
0.401 |
|
2005 |
Vendrell E, Morales C, Risques RA, Capellà G, Peinado MA. Genomic determinants of prognosis in colorectal cancer. Cancer Letters. 221: 1-9. PMID 15797621 DOI: 10.1016/j.canlet.2004.08.023 |
0.306 |
|
2004 |
Frigola J, Solé X, Paz MF, Moreno V, Esteller M, Capellà G, Peinado MA. Differential DNA hypermethylation and hypomethylation signatures in colorectal cancer. Human Molecular Genetics. 14: 319-26. PMID 15574462 DOI: 10.1093/Hmg/Ddi028 |
0.394 |
|
2004 |
Capella G, Frigola J, Germà JR, Solé X, Paz MF, Esteller M, Moreno V, Peinado MA. Profiles of DNA methylation in colorectal cancer Journal of Clinical Oncology. 22: 3728-3728. DOI: 10.1200/Jco.2004.22.14_Suppl.3728 |
0.422 |
|
2003 |
Risques RA, Ribas M, Peinado MA. Assessment of cumulated genetic alterations in colorectal cancer. Histology and Histopathology. 18: 1289-99. PMID 12973695 DOI: 10.14670/HH-18.1289 |
0.334 |
|
2003 |
Paz MF, Wei S, Cigudosa JC, Rodriguez-Perales S, Peinado MA, Huang TH, Esteller M. Genetic unmasking of epigenetically silenced tumor suppressor genes in colon cancer cells deficient in DNA methyltransferases. Human Molecular Genetics. 12: 2209-19. PMID 12915469 DOI: 10.1093/Hmg/Ddg226 |
0.406 |
|
2002 |
Frigola J, Ribas M, Risques RA, Peinado MA. Methylome profiling of cancer cells by amplification of inter-methylated sites (AIMS). Nucleic Acids Research. 30: e28. PMID 11917034 |
0.424 |
|
2001 |
Esteller M, Fraga MF, Guo M, Garcia-Foncillas J, Hedenfalk I, Godwin AK, Trojan J, Vaurs-Barrière C, Bignon YJ, Ramus S, Benitez J, Caldes T, Akiyama Y, Yuasa Y, Launonen V, ... ... Peinado MA, et al. DNA methylation patterns in hereditary human cancers mimic sporadic tumorigenesis Human Molecular Genetics. 10: 3001-3007. PMID 11751682 DOI: 10.1093/Hmg/10.26.3001 |
0.417 |
|
1997 |
Arribas R, Capellà G, Tórtola S, Masramon L, Grizzle WE, Perucho M, Peinado MA. Assessment of genomic damage in colorectal cancer by DNA fingerprinting: prognostic applications. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 15: 3230-40. PMID 9336360 DOI: 10.1200/Jco.1997.15.10.3230 |
0.324 |
|
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