Sean Nee, Ph.D. - Publications

Affiliations: 
Institute of Evolutionary Biology University of Edinburgh, Edinburgh, Scotland, United Kingdom 

85 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Stone GN, Nee S, Felsenstein J. Controlling for non-independence in comparative analysis of patterns across populations within species. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 366: 1410-24. PMID 21444315 DOI: 10.1098/rstb.2010.0311  1
2010 Penman B, Buckee C, Gupta S, Nee S. Genome-wide association studies in Plasmodium species Bmc Biology. 8. DOI: 10.1186/1741-7007-8-90  1
2007 Recker M, Pybus OG, Nee S, Gupta S. The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types Proceedings of the National Academy of Sciences of the United States of America. 104: 7711-7716. PMID 17460037 DOI: 10.1073/pnas.0702154104  1
2006 Nee S, Colegrave N. Ecology: Paradox of the clumps Nature. 441: 417-418. PMID 16724048 DOI: 10.1038/441417a  1
2006 Sloan WT, Lunn M, Woodcock S, Head IM, Nee S, Curtis TP. Quantifying the roles of immigration and chance in shaping prokaryote community structure Environmental Microbiology. 8: 732-740. PMID 16584484 DOI: 10.1111/j.1462-2920.2005.00956.x  1
2006 Nee S. Birth-death models in macroevolution Annual Review of Ecology, Evolution, and Systematics. 37: 1-17. DOI: 10.1146/annurev.ecolsys.37.091305.110035  1
2005 Nee S, Colegrave N, West SA, Grafen A. The illusion of invariant quantities in life histories. Science (New York, N.Y.). 309: 1236-9. PMID 16109879 DOI: 10.1126/science.1114488  1
2005 Nee S. The great chain of being Nature. 435: 429. PMID 15917787 DOI: 10.1038/435429a  1
2005 Nee S. The neutral theory of biodiversity: Do the numbers add up? Functional Ecology. 19: 173-176. DOI: 10.1111/j.0269-8463.2005.00922.x  1
2004 Nee S. Extinction, slime, and bottoms Plos Biology. 2. PMID 15314670 DOI: 10.1371/journal.pbio.0020272  1
2004 Nee S. More than meets the eye Nature. 429: 804-805. PMID 15215837 DOI: 10.1038/429804a  1
2004 Recker M, Nee S, Bull PC, Kinyanjul S, Marsh K, Hewbold C, Gupta S. Transient cross-reactive immune responses can orchestrate antigenic variation in malaria Nature. 429: 555-558. PMID 15175751 DOI: 10.1038/nature02486  1
2004 Nee S. Professor John Maynard Smith 1920-2004 Trends in Ecology and Evolution. 19: 345-346. DOI: 10.1016/j.tree.2004.05.007  1
2004 Nee S. Extinct meets extant: Simple models in paleontology and molecular phylogenetics Paleobiology. 30: 172-178.  1
2003 Gandon S, Mackinnon M, Nee S, Read A. Imperfect vaccination: some epidemiological and evolutionary consequences. Proceedings. Biological Sciences / the Royal Society. 270: 1129-36. PMID 12816650 DOI: 10.1098/rspb.2003.2370  1
2003 Nee S, Stone G. The end of the beginning for neutral theory Trends in Ecology and Evolution. 18: 433-434. DOI: 10.1016/S0169-5347(03)00196-4  1
2003 Nee S. Unveiling prokaryotic diversity Trends in Ecology and Evolution. 18: 62-63. DOI: 10.1016/S0169-5347(02)00043-5  1
2002 West SA, Smith TG, Nee S, Read AF. Fertility insurance and the sex ratios of malaria and related hemospororin blood parasites Journal of Parasitology. 88: 258-263. PMID 12053995  1
2002 Soubeyrand B, Plotkin SA, Gandon S, Mackinnon MJ, Nee S, Read AF. Microbial evolution: Antitoxin vaccines and pathogen virulence Nature. 417: 609-610. PMID 12050654  1
2002 Nee S. Thinking big in ecology Nature. 417: 229-230. PMID 12015579 DOI: 10.1038/417229a  1
2002 Nee S, West SA, Read AF. Inbreeding and parasite sex ratios Proceedings of the Royal Society B: Biological Sciences. 269: 755-760. PMID 11934369 DOI: 10.1098/rspb.2001.1938  1
2002 Nee S, Cotgreave P. Does the species/area relationship account for the density/area relationship? Oikos. 99: 545-551. DOI: 10.1034/j.1600-0706.2002.11637.x  1
2001 Gandon S, Mackinnon MJ, Nee S, Read AF. Imperfect vaccines and the evolution of pathogen virulence. Nature. 414: 751-6. PMID 11742400 DOI: 10.1038/414751a  1
2001 Barraclough TG, Nee S. Phylogenetics and speciation. Trends in Ecology & Evolution. 16: 391-399. PMID 11403872 DOI: 10.1016/S0169-5347(01)02161-9  1
2001 Nee S. Inferring speciation rates from phylogenies. Evolution; International Journal of Organic Evolution. 55: 661-8. PMID 11392383  1
2000 Nee S. Mutualism, parasitism and competition in the evolution of coviruses. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 355: 1607-13. PMID 11127906 DOI: 10.1098/rstb.2000.0722  1
1999 Nee S. Lysenko took a dismal view of Malthus [3] Nature. 397: 13-14.  1
1998 McCall RA, Nee S, Harvey PH. The role of wing length in the evolution of avian flightlessness Evolutionary Ecology. 12: 569-580. DOI: 10.1023/A:1006508826501  1
1998 Barraclough TG, Nee S, Harvey PH. Sister-group analysis in identifying correlates of diversification Evolutionary Ecology. 12: 751-754.  1
1997 Nee S, May RM. Extinction and the loss of evolutionary history. Science (New York, N.Y.). 278: 692-4. PMID 9381180 DOI: 10.1126/science.278.5338.692  1
1997 Rambaut A, Harvey PH, Nee S. End-Epi: an application for inferring phylogenetic and population dynamical processes from molecular sequences. Computer Applications in the Biosciences : Cabios. 13: 303-6. PMID 9183536  1
1997 Ong CK, Nee S, Rambaut A, Bernard HU, Harvey PH. Elucidating the population histories and transmission dynamics of papillomaviruses using phylogenetic trees. Journal of Molecular Evolution. 44: 199-206. PMID 9069180 DOI: 10.1007/PL00006136  1
1996 Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM. Explaining "linguistic features" of noncoding DNA. Science (New York, N.Y.). 271: 14b-5b. PMID 17798153 DOI: 10.1126/science.271.5245.14b  0.64
1996 Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM. No signs of hidden language in noncoding DNA. Physical Review Letters. 76: 1977. PMID 10060572  0.64
1996 Rambaut A, Grassly NC, Nee S, Harvey PH. Bi-De: an application for simulating phylogenetic processes. Computer Applications in the Biosciences : Cabios. 12: 469-71. PMID 9021264  1
1996 Ong CK, Nee S, Rambaut A, Harvey PH. Inferring the population history of an epidemic from a phylogenetic tree. Journal of Theoretical Biology. 182: 173-8. PMID 8944148 DOI: 10.1006/jtbi.1996.0152  1
1996 Gupta S, Maiden MC, Feavers IM, Nee S, May RM, Anderson RM. The maintenance of strain structure in populations of recombining infectious agents. Nature Medicine. 2: 437-42. PMID 8597954 DOI: 10.1038/nm0496-437  1
1996 Bonhoeffer S, Herz AV, Boerlijst MC, Nee S, Nowak MA, May RM. Explaining "linguistic features" of noncoding DNA. Science (New York, N.Y.). 271: 14-5. PMID 8539587  1
1996 Stone G, Willmer P, Nee S. Daily partitioning of pollinators in an African Acacia community Proceedings of the Royal Society B: Biological Sciences. 263: 1389-1393. DOI: 10.1098/rspb.1996.0203  1
1996 Barraclough TG, Harvey PH, Nee S. Rate of rbcL gene sequence evolution and species diversification in flowering plants (angiosperms) Proceedings of the Royal Society B: Biological Sciences. 263: 589-591. DOI: 10.1098/rspb.1996.0088  1
1996 Nee S, Lawton JH. Body size and biodiversity Nature. 380: 672-673. DOI: 10.1038/380672a0  1
1996 McCall RA, Nee S, Harvey PH. Determining the influence of continental species-richness, island availability and vicariance in the formation of island-endemic bird species Biodiversity Letters. 3: 137-150.  1
1996 Veltman CJ, Nee S, Crawley MJ. Correlates of introduction success in exotic New Zealand birds American Naturalist. 147: 542-557.  1
1995 Holmes EC, Nee S, Rambaut A, Garnett GP, Harvey PH. Revealing the history of infectious disease epidemics through phylogenetic trees. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 349: 33-40. PMID 8748017 DOI: 10.1098/rstb.1995.0088  1
1995 Nee S, Holmes EC, Rambaut A, Harvey PH. Inferring population history from molecular phylogenies. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 349: 25-31. PMID 8748016 DOI: 10.1098/rstb.1995.0087  1
1995 Read AF, Anwar M, Shutler D, Nee S. Sex allocation and population structure in malaria and related parasitic protozoa. Proceedings. Biological Sciences / the Royal Society. 260: 359-63. PMID 7630901 DOI: 10.1098/rspb.1995.0105  1
1995 Purvis A, Nee S, Harvey PH. Macroevolutionary inferences from primate phylogeny. Proceedings. Biological Sciences / the Royal Society. 260: 329-33. PMID 7630899 DOI: 10.1098/rspb.1995.0100  1
1995 Barraclough TG, Harvey PH, Nee S. Sexual selection and taxonomic diversity in passerine birds Proceedings of the Royal Society B: Biological Sciences. 259: 211-215. DOI: 10.1098/rspb.1995.0031  1
1995 Read AF, Nee S. Inference from binary comparative data Journal of Theoretical Biology. 173: 99-108. DOI: 10.1006/jtbi.1995.0047  1
1995 May RM, Nee S. The species alias problem Nature. 378: 447-448.  1
1994 Harvey PH, May RM, Nee S. PHYLOGENIES WITHOUT FOSSILS. Evolution; International Journal of Organic Evolution. 48: 523-529. PMID 28568267 DOI: 10.1111/j.1558-5646.1994.tb01341.x  1
1994 Nee S, Harvey PH. Getting to the roots of flowering plant diversity. Science (New York, N.Y.). 264: 1549-50. PMID 17769595 DOI: 10.1126/science.264.5165.1549  1
1994 Nee S, Holmes EC, May RM, Harvey PH. Extinction rates can be estimated from molecular phylogenies. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 344: 77-82. PMID 8878259 DOI: 10.1098/rstb.1994.0054  1
1994 Harvey PH, Holmes EC, Nee S. Model phylogenies to explain the real world. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 16: 767-70. PMID 7980481 DOI: 10.1002/bies.950161012  1
1994 Nee S, May RM, Harvey PH. The reconstructed evolutionary process. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 344: 305-11. PMID 7938201 DOI: 10.1098/rstb.1994.0068  1
1994 Harvey PH, May RM, Nee S. Phylogenies without fossils Evolution. 48: 523-529.  1
1994 Lawton JH, Nee S, Letcher AJ, Harvey PH. Animal distributions: patterns and processes Large-Scale Ecology and Conservation Biology. 35th Bes Symposium, Southampton, 1993. 41-58.  1
1994 Nee S, Harvey PH. Getting to the roots of flowering plant diversity Science. 264: 1549-1550.  1
1994 Nee S. How populations persist [11] Nature. 367: 123-124.  1
1994 Letcher AJ, Purvis A, Nee S, Harvey PH. Patterns of overlap in the geographic ranges of Palearctic and British mammals Journal of Animal Ecology. 63: 871-879.  1
1993 Read AF, Nee S. HALDANE'S COINCIDENCE: A REPLY TO BROOKFIELD. Evolution; International Journal of Organic Evolution. 47: 1888-1889. PMID 28568009 DOI: 10.1111/j.1558-5646.1993.tb01279.x  0.44
1993 Harvey PH, Nee S. New uses for new phylogenies European Review. 1: 11-19. DOI: 10.1017/S106279870000034X  1
1993 Nee S, May RM. Population-level consequences of conspecific brood parasitism in birds and insects Journal of Theoretical Biology. 161: 95-109. DOI: 10.1006/jtbi.1993.1042  1
1993 Harvey PH, Nee S, Read AF. Fluctuating asymmetry [9] Nature. 363: 217.  1
1993 Read AF, Nee S. Haldane's coincidence: A reply to Brookfield Evolution. 47: 1888-1889.  1
1992 Read AF, Narara A, Nee S, Keymer AE, Day KP. Gametocyte sex ratios as indirect measures of outcrossing rates in malaria. Parasitology. 104: 387-95. PMID 1641238 DOI: 10.1017/S0031182000063630  1
1992 Nee S. Uncorrelated DNA walks. Nature. 357: 450. PMID 1608445 DOI: 10.1038/357450a0  1
1992 Day KP, Koella JC, Nee S, Gupta S, Read AF. Population genetics and dynamics of Plasmodium falciparum: an ecological view. Parasitology. 104: S35-52. PMID 1589299  1
1992 Nee S, Mooers AO, Harvey PH. Tempo and mode of evolution revealed from molecular phylogenies. Proceedings of the National Academy of Sciences of the United States of America. 89: 8322-6. PMID 1518865  1
1992 Nee S, May RM. Dynamics of metapopulations: habitat destruction and competitive coexistence Journal of Animal Ecology. 61: 37-40.  1
1991 Harvey PH, Nee S. Evolutionary ecology. How to live like a mammal. Nature. 350: 23-4. PMID 2002840 DOI: 10.1038/350023a0  1
1991 Pomiankowski A, Iwasa Y, Nee S. The evolution of costly mate preferences. I. Fisher and biased mutation Evolution. 45: 1422-1430.  1
1991 Iwasa Y, Pomiankowski A, Nee S. The evolution of costly mate preferences. II. The "handicap' principle Evolution. 45: 1431-1442.  1
1991 Nee S, Read AF, Greenwood JJD, Harvey PH. The relationship between abundance and body size in British birds Nature. 351: 312-313.  1
1991 Nee S, Harvey PH, May RM. Lifting the veil on abundance patterns Proceedings of the Royal Society B: Biological Sciences. 243: 161-163.  1
1990 Nee S. Community construction. Trends in Ecology & Evolution. 5: 337-40. PMID 21232387 DOI: 10.1016/0169-5347(90)90182-D  1
1990 Read AF, Nee S. Male schistosomes: more than just muscle? Parasitology Today (Personal Ed.). 6: 297; author reply 29. PMID 15463368 DOI: 10.1016/0169-4758(90)90256-4  1
1990 Nee S, Smith JM. The evolutionary biology of molecular parasites. Parasitology. 100: S5-18. PMID 2172893  1
1990 Nee S, Harvey PH. Profiting from biodiversity [6] Nature. 348: 683.  1
1990 Smith JM, Nee S. Clicking into decline? Nature. 348: 391-392.  1
1989 Nee S. Does Hamilton's rule describe the evolution of reciprocal altruism? Journal of Theoretical Biology. 141: 81-91. PMID 2634163 DOI: 10.1016/S0022-5193(89)80010-4  1
1989 Nee S. Antagonistic co-evolution and the evolution of genotypic randomization. Journal of Theoretical Biology. 140: 499-518. PMID 2615403 DOI: 10.1016/S0022-5193(89)80111-0  1
1989 Nee S. On the evolution of sex in RNA viruses. Journal of Theoretical Biology. 138: 407-12. PMID 2593681 DOI: 10.1016/S0022-5193(89)80201-2  1
1988 Nee S. Deleterious mutation and genetic recombination. Nature. 331: 308. PMID 3340177 DOI: 10.1038/331308a0  1
1987 Nee S. The evolution of multicompartmental genomes in viruses. Journal of Molecular Evolution. 25: 277-81. PMID 3118044 DOI: 10.1007/BF02603110  1
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