| Year |
Citation |
Score |
| 2023 |
Nies F, Wein T, Hanke DM, Springstein BL, Alcorta J, Taubenheim C, Dagan T. Role of natural transformation in the evolution of small cryptic plasmids in Synechocystis sp. PCC 6803. Environmental Microbiology Reports. 15: 656-668. PMID 37794696 DOI: 10.1111/1758-2229.13203 |
0.349 |
|
| 2022 |
Romero Picazo D, Werner A, Dagan T, Kupczok A. Pangenome Evolution in Environmentally Transmitted Symbionts of Deep-Sea Mussels Is Governed by Vertical Inheritance. Genome Biology and Evolution. 14. PMID 35731940 DOI: 10.1093/gbe/evac098 |
0.515 |
|
| 2022 |
Woehle C, Roy AS, Glock N, Michels J, Wein T, Weissenbach J, Romero D, Hiebenthal C, Gorb SN, Schönfeld J, Dagan T. Denitrification in foraminifera has an ancient origin and is complemented by associated bacteria. Proceedings of the National Academy of Sciences of the United States of America. 119: e2200198119. PMID 35704763 DOI: 10.1073/pnas.2200198119 |
0.316 |
|
| 2021 |
Wang Y, Batra A, Schulenburg H, Dagan T. Gene sharing among plasmids and chromosomes reveals barriers for antibiotic resistance gene transfer. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20200467. PMID 34839702 DOI: 10.1098/rstb.2020.0467 |
0.634 |
|
| 2021 |
Wein T, Wang Y, Barz M, Stücker FT, Hammerschmidt K, Dagan T. Essential gene acquisition destabilizes plasmid inheritance. Plos Genetics. 17: e1009656. PMID 34252089 DOI: 10.1371/journal.pgen.1009656 |
0.646 |
|
| 2021 |
Svetlitsky D, Dagan T, Ziv-Ukelson M. Discovery of multi-operon colinear syntenic blocks in microbial genomes. Bioinformatics (Oxford, England). 36: i21-i29. PMID 32657415 DOI: 10.1093/bioinformatics/btaa503 |
0.496 |
|
| 2020 |
Wein T, Wang Y, Hülter NF, Hammerschmidt K, Dagan T. Antibiotics Interfere with the Evolution of Plasmid Stability. Current Biology : Cb. PMID 32795438 DOI: 10.1016/j.cub.2020.07.019 |
0.579 |
|
| 2020 |
Svetlitsky D, Dagan T, Chalifa-Caspi V, Ziv-Ukelson M. CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes. Bioinformatics (Oxford, England). 35: 1634-1643. PMID 30321308 DOI: 10.1093/bioinformatics/bty861 |
0.488 |
|
| 2019 |
Wein T, Stücker FT, Hülter NF, Dagan T. Quantification of Plasmid-Mediated Antibiotic Resistance in an Experimental Evolution Approach. Journal of Visualized Experiments : Jove. PMID 31885375 DOI: 10.3791/60749 |
0.425 |
|
| 2019 |
Rausch P, Rühlemann M, Hermes BM, Doms S, Dagan T, Dierking K, Domin H, Fraune S, von Frieling J, Hentschel U, Heinsen FA, Höppner M, Jahn MT, Jaspers C, Kissoyan KAB, et al. Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms. Microbiome. 7: 133. PMID 31521200 DOI: 10.1186/S40168-019-0743-1 |
0.333 |
|
| 2019 |
Kupczok A, Dagan T. Rates of Molecular Evolution in a Marine Phage Lineage. Viruses. 11. PMID 31390807 DOI: 10.3390/v11080720 |
0.473 |
|
| 2019 |
Wein T, Romero Picazo D, Blow F, Woehle C, Jami E, Reusch TBH, Martin WF, Dagan T. Currency, Exchange, and Inheritance in the Evolution of Symbiosis. Trends in Microbiology. PMID 31257129 DOI: 10.1016/J.Tim.2019.05.010 |
0.41 |
|
| 2019 |
Wein T, Hülter NF, Mizrahi I, Dagan T. Emergence of plasmid stability under non-selective conditions maintains antibiotic resistance. Nature Communications. 10: 2595. PMID 31197163 DOI: 10.1038/s41467-019-10600-7 |
0.378 |
|
| 2019 |
Ilhan J, Kupczok A, Woehle C, Wein T, Hülter NF, Rosenstiel P, Landan G, Mizrahi I, Dagan T. Segregational Drift and the Interplay between Plasmid Copy Number and Evolvability. Molecular Biology and Evolution. 36: 472-486. PMID 30517696 DOI: 10.1093/molbev/msy225 |
0.341 |
|
| 2018 |
Godfroid M, Dagan T, Kupczok A. Recombination Signal in Mycobacterium tuberculosis Stems from Reference-guided Assemblies and Alignment Artefacts. Genome Biology and Evolution. 10: 1920-1926. PMID 30010866 DOI: 10.1093/gbe/evy143 |
0.311 |
|
| 2017 |
Woehle C, Dagan T, Landan G, Vardi A, Rosenwasser S. Expansion of the redox-sensitive proteome coincides with the plastid endosymbiosis. Nature Plants. 3: 17066. PMID 28504699 DOI: 10.1038/nplants.2017.66 |
0.33 |
|
| 2017 |
Weissenbach J, Ilhan J, Bogumil D, Hülter N, Stucken K, Dagan T. Evolution of Chaperonin Gene Duplication in Stigonematalean Cyanobacteria (Subsection V). Genome Biology and Evolution. 9: 241-252. PMID 28082600 DOI: 10.1093/gbe/evw287 |
0.362 |
|
| 2016 |
Popa O, Landan G, Dagan T. Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction. The Isme Journal. 11: 543-554. PMID 27648812 DOI: 10.1038/ismej.2016.116 |
0.397 |
|
| 2014 |
Dagan T, Bapteste E, McInerney JO, Martin WF. SMBE Satellite meeting on reticulated microbial evolution 2014--meeting report Genome Biology and Evolution. 6: 2206-2209. PMID 25115940 DOI: 10.1093/Gbe/Evu173 |
0.525 |
|
| 2014 |
Bogumil D, Alvarez-Ponce D, Landan G, McInerney JO, Dagan T. Integration of two ancestral chaperone systems into one: the evolution of eukaryotic molecular chaperones in light of eukaryogenesis. Molecular Biology and Evolution. 31: 410-8. PMID 24188869 DOI: 10.1093/Molbev/Mst212 |
0.333 |
|
| 2013 |
Dagan T, Roettger M, Stucken K, Landan G, Koch R, Major P, Gould SB, Goremykin VV, Rippka R, Tandeau de Marsac N, Gugger M, Lockhart PJ, Allen JF, Brune I, Maus I, et al. Genomes of Stigonematalean cyanobacteria (subsection V) and the evolution of oxygenic photosynthesis from prokaryotes to plastids. Genome Biology and Evolution. 5: 31-44. PMID 23221676 DOI: 10.1093/Gbe/Evs117 |
0.62 |
|
| 2012 |
Nelson-Sathi S, Dagan T, Landan G, Janssen A, Steel M, McInerney JO, Deppenmeier U, Martin WF. Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea. Proceedings of the National Academy of Sciences of the United States of America. 109: 20537-20542. PMID 23184964 DOI: 10.1073/Pnas.1209119109 |
0.588 |
|
| 2012 |
Heinz E, Williams TA, Nakjang S, Noël CJ, Swan DC, Goldberg AV, Harris SR, Weinmaier T, Markert S, Becher D, Bernhardt J, Dagan T, Hacker C, Lucocq JM, Schweder T, et al. The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution. Plos Pathogens. 8: e1002979. PMID 23133373 DOI: 10.1371/Journal.Ppat.1002979 |
0.414 |
|
| 2012 |
Stucken K, Ilhan J, Roettger M, Dagan T, Martin WF. Transformation and conjugal transfer of foreign genes into the filamentous multicellular cyanobacteria (subsection V) Fischerella and Chlorogloeopsis. Current Microbiology. 65: 552-60. PMID 22833222 DOI: 10.1007/S00284-012-0193-5 |
0.474 |
|
| 2012 |
Thiergart T, Landan G, Schenk M, Dagan T, Martin WF. An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biology and Evolution. 4: 466-85. PMID 22355196 DOI: 10.1093/Gbe/Evs018 |
0.649 |
|
| 2012 |
Burstein D, Gould SB, Zimorski V, Kloesges T, Kiosse F, Major P, Martin WF, Pupko T, Dagan T. A machine learning approach to identify hydrogenosomal proteins in Trichomonas vaginalis. Eukaryotic Cell. 11: 217-28. PMID 22140228 DOI: 10.1128/Ec.05225-11 |
0.434 |
|
| 2011 |
Woehle C, Dagan T, Martin WF, Gould SB. Red and problematic green phylogenetic signals among thousands of nuclear genes from the photosynthetic and apicomplexa-related Chromera velia. Genome Biology and Evolution. 3: 1220-30. PMID 21965651 DOI: 10.1093/Gbe/Evr100 |
0.55 |
|
| 2011 |
Popa O, Dagan T. Trends and barriers to lateral gene transfer in prokaryotes. Current Opinion in Microbiology. 14: 615-23. PMID 21856213 DOI: 10.1016/j.mib.2011.07.027 |
0.497 |
|
| 2011 |
Dagan T. Phylogenomic networks. Trends in Microbiology. 19: 483-91. PMID 21820313 DOI: 10.1016/j.tim.2011.07.001 |
0.342 |
|
| 2011 |
Popa O, Hazkani-Covo E, Landan G, Martin W, Dagan T. Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes. Genome Research. 21: 599-609. PMID 21270172 DOI: 10.1101/Gr.115592.110 |
0.606 |
|
| 2011 |
Nelson-Sathi S, List JM, Geisler H, Fangerau H, Gray RD, Martin W, Dagan T. Networks uncover hidden lexical borrowing in Indo-European language evolution. Proceedings. Biological Sciences / the Royal Society. 278: 1794-803. PMID 21106583 DOI: 10.1098/Rspb.2010.1917 |
0.413 |
|
| 2010 |
Kloesges T, Popa O, Martin W, Dagan T. Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths. Molecular Biology and Evolution. 28: 1057-74. PMID 21059789 DOI: 10.1093/Molbev/Msq297 |
0.609 |
|
| 2010 |
Wägele H, Deusch O, Händeler K, Martin R, Schmitt V, Christa G, Pinzger B, Gould SB, Dagan T, Klussmann-Kolb A, Martin W. Transcriptomic evidence that longevity of acquired plastids in the photosynthetic slugs Elysia timida and Plakobranchus ocellatus does not entail lateral transfer of algal nuclear genes. Molecular Biology and Evolution. 28: 699-706. PMID 20829345 DOI: 10.1093/Molbev/Msq239 |
0.56 |
|
| 2010 |
Dagan T, Roettger M, Bryant D, Martin W. Genome networks root the tree of life between prokaryotic domains. Genome Biology and Evolution. 2: 379-92. PMID 20624742 DOI: 10.1093/Gbe/Evq025 |
0.633 |
|
| 2010 |
Ahmadinejad N, Dagan T, Gruenheit N, Martin W, Gabaldón T. Evolution of spliceosomal introns following endosymbiotic gene transfer. Bmc Evolutionary Biology. 10: 57. PMID 20178587 DOI: 10.1186/1471-2148-10-57 |
0.621 |
|
| 2009 |
Bapteste E, O'Malley MA, Beiko RG, Ereshefsky M, Gogarten JP, Franklin-Hall L, Lapointe FJ, Dupré J, Dagan T, Boucher Y, Martin W. Prokaryotic evolution and the tree of life are two different things. Biology Direct. 4: 34. PMID 19788731 DOI: 10.1186/1745-6150-4-34 |
0.416 |
|
| 2009 |
Dagan T, Martin W. Getting a better picture of microbial evolution en route to a network of genomes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2187-96. PMID 19571239 DOI: 10.1098/Rstb.2009.0040 |
0.597 |
|
| 2009 |
Dagan T, Martin W. Microbiology. Seeing green and red in diatom genomes. Science (New York, N.Y.). 324: 1651-2. PMID 19556490 DOI: 10.1126/Science.1175765 |
0.51 |
|
| 2009 |
Roettger M, Martin W, Dagan T. A machine-learning approach reveals that alignment properties alone can accurately predict inference of lateral gene transfer from discordant phylogenies. Molecular Biology and Evolution. 26: 1931-9. PMID 19443855 DOI: 10.1093/Molbev/Msp105 |
0.576 |
|
| 2009 |
Atteia A, Adrait A, Brugière S, Tardif M, van Lis R, Deusch O, Dagan T, Kuhn L, Gontero B, Martin W, Garin J, Joyard J, Rolland N. A proteomic survey of Chlamydomonas reinhardtii mitochondria sheds new light on the metabolic plasticity of the organelle and on the nature of the alpha-proteobacterial mitochondrial ancestor. Molecular Biology and Evolution. 26: 1533-48. PMID 19349646 DOI: 10.1093/Molbev/Msp068 |
0.436 |
|
| 2008 |
Dagan T, Artzy-Randrup Y, Martin W. Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proceedings of the National Academy of Sciences of the United States of America. 105: 10039-44. PMID 18632554 DOI: 10.1073/Pnas.0800679105 |
0.618 |
|
| 2008 |
Deusch O, Landan G, Roettger M, Gruenheit N, Kowallik KV, Allen JF, Martin W, Dagan T. Genes of cyanobacterial origin in plant nuclear genomes point to a heterocyst-forming plastid ancestor. Molecular Biology and Evolution. 25: 748-61. PMID 18222943 DOI: 10.1093/Molbev/Msn022 |
0.624 |
|
| 2008 |
Esser C, Martin W, Dagan T. The origin of mitochondria in light of a fluid prokaryotic chromosome model. Biology Letters. 3: 180-4. PMID 17251118 DOI: 10.1098/Rsbl.2006.0582 |
0.471 |
|
| 2007 |
Basu MK, Rogozin IB, Deusch O, Dagan T, Martin W, Koonin EV. Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues. Molecular Biology and Evolution. 25: 111-9. PMID 17974547 DOI: 10.1093/Molbev/Msm234 |
0.614 |
|
| 2007 |
Ahmadinejad N, Dagan T, Martin W. Genome history in the symbiotic hybrid Euglena gracilis. Gene. 402: 35-9. PMID 17716833 DOI: 10.1016/J.Gene.2007.07.023 |
0.625 |
|
| 2007 |
Martin W, Dagan T, Koonin EV, Dipippo JL, Gogarten JP, Lake JA. The evolution of eukaryotes. Science (New York, N.Y.). 316: 542-3; author reply . PMID 17463271 DOI: 10.1126/Science.316.5824.542C |
0.497 |
|
| 2007 |
Dagan T, Martin W. Testing hypotheses without considering predictions. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 500-3. PMID 17450603 DOI: 10.1002/Bies.20566 |
0.327 |
|
| 2007 |
Dagan T, Martin W. Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution. Proceedings of the National Academy of Sciences of the United States of America. 104: 870-5. PMID 17213324 DOI: 10.1073/Pnas.0606318104 |
0.634 |
|
| 2006 |
Dagan T, Martin W. The tree of one percent. Genome Biology. 7: 118. PMID 17081279 DOI: 10.1186/Gb-2006-7-10-118 |
0.588 |
|
| 2006 |
Dagan T, Blekhman R, Graur D. The "domino theory" of gene death: gradual and mass gene extinction events in three lineages of obligate symbiotic bacterial pathogens. Molecular Biology and Evolution. 23: 310-6. PMID 16237210 DOI: 10.1093/Molbev/Msj036 |
0.684 |
|
| 2005 |
Cohen N, Dagan T, Stone L, Graur D. GC composition of the human genome: in search of isochores. Molecular Biology and Evolution. 22: 1260-72. PMID 15728737 DOI: 10.1093/Molbev/Msi115 |
0.581 |
|
| 2005 |
Dagan T, Graur D. The comparative method rules! Codon volatility cannot detect positive Darwinian selection using a single genome sequence. Molecular Biology and Evolution. 22: 496-500. PMID 15525696 DOI: 10.1093/Molbev/Msi033 |
0.566 |
|
| 2004 |
Sorek R, Lev-Maor G, Reznik M, Dagan T, Belinky F, Graur D, Ast G. Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons. Molecular Cell. 14: 221-31. PMID 15099521 DOI: 10.1016/S1097-2765(04)00181-9 |
0.541 |
|
| 2004 |
Dagan T, Sorek R, Sharon E, Ast G, Graur D. AluGene: a database of Alu elements incorporated within protein-coding genes. Nucleic Acids Research. 32: D489-92. PMID 14681464 DOI: 10.1093/Nar/Gkh132 |
0.624 |
|
| 2003 |
Fleishman SJ, Dagan T, Graur D. pANT: a method for the pairwise assessment of nonfunctionalization times of processed pseudogenes. Molecular Biology and Evolution. 20: 1876-80. PMID 12885960 DOI: 10.1093/Molbev/Msg202 |
0.595 |
|
| 2002 |
Dagan T, Talmor Y, Graur D. Ratios of radical to conservative amino acid replacement are affected by mutational and compositional factors and may not be indicative of positive Darwinian selection. Molecular Biology and Evolution. 19: 1022-5. PMID 12082122 DOI: 10.1093/Oxfordjournals.Molbev.A004161 |
0.499 |
|
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