Andrew L. Goodman, Ph.D. - Publications

Microbial Pathogenesis Yale University, New Haven, CT 
Microbiota, Microbiome, Genomics, Gnotobiotic, Germfree, Symbiosis, Gut, Flora, Bacteria, Pathogen

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Putnam EE, Goodman AL. B vitamin acquisition by gut commensal bacteria. Plos Pathogens. 16: e1008208. PMID 31971969 DOI: 10.1371/journal.ppat.1008208  0.44
2019 Rundell EA, Commodore N, Goodman AL, Kazmierczak BI. A screen for antibiotic resistance determinants reveals a fitness cost of the flagellum in . Journal of Bacteriology. PMID 31871033 DOI: 10.1128/JB.00682-19  0.36
2019 Bencivenga-Barry NA, Lim B, Herrera CM, Trent MS, Goodman AL. Genetic manipulation of wild human gut . Journal of Bacteriology. PMID 31712278 DOI: 10.1128/JB.00544-19  0.36
2018 Townsend GE, Han W, Schwalm ND, Raghavan V, Barry NA, Goodman AL, Groisman EA. Dietary sugar silences a colonization factor in a mammalian gut symbiont. Proceedings of the National Academy of Sciences of the United States of America. PMID 30559205 DOI: 10.1073/pnas.1813780115  0.4
2018 Wexler AG, Schofield WB, Degnan PH, Folta-Stogniew E, Barry NA, Goodman AL. Human gut capture vitamin B via cell surface-exposed lipoproteins. Elife. 7. PMID 30226189 DOI: 10.7554/eLife.37138  0.72
2018 Schofield WB, Zimmermann-Kogadeeva M, Zimmermann M, Barry NA, Goodman AL. The Stringent Response Determines the Ability of a Commensal Bacterium to Survive Starvation and to Persist in the Gut. Cell Host & Microbe. 24: 120-132.e6. PMID 30008292 DOI: 10.1016/j.chom.2018.06.002  0.4
2018 Gopinath S, Kim MV, Rakib T, Wong PW, van Zandt M, Barry NA, Kaisho T, Goodman AL, Iwasaki A. Topical application of aminoglycoside antibiotics enhances host resistance to viral infections in a microbiota-independent manner. Nature Microbiology. PMID 29632368 DOI: 10.1038/s41564-018-0138-2  0.4
2018 Crabill E, Schofield WB, Newton HJ, Goodman AL, Roy CR. Dot/Icm-translocated proteins important for biogenesis of the Coxiella burnetii-containing vacuole identified by screening of an effector mutant sub-library. Infection and Immunity. PMID 29339460 DOI: 10.1128/IAI.00758-17  0.36
2017 Shames SR, Liu L, Havey JC, Schofield WB, Goodman AL, Roy CR. Multiple Legionella pneumophila effector virulence phenotypes revealed through high-throughput analysis of targeted mutant libraries. Proceedings of the National Academy of Sciences of the United States of America. PMID 29133401 DOI: 10.1073/pnas.1708553114  0.36
2017 Wexler AG, Goodman AL. An insider's perspective: Bacteroides as a window into the microbiome. Nature Microbiology. 2: 17026. PMID 28440278 DOI: 10.1038/nmicrobiol.2017.26  0.36
2017 Lim B, Zimmermann M, Barry NA, Goodman AL. Engineered Regulatory Systems Modulate Gene Expression of Human Commensals in the Gut. Cell. 169: 547-558.e15. PMID 28431252 DOI: 10.1016/j.cell.2017.03.045  0.4
2017 Raymann K, Moeller AH, Goodman AL, Ochman H. Unexplored Archaeal Diversity in the Great Ape Gut Microbiome. Msphere. 2. PMID 28251182 DOI: 10.1128/mSphere.00026-17  0.72
2016 Perry RJ, Peng L, Barry NA, Cline GW, Zhang D, Cardone RL, Petersen KF, Kibbey RG, Goodman AL, Shulman GI. Acetate mediates a microbiome-brain-β-cell axis to promote metabolic syndrome. Nature. 534: 213-7. PMID 27279214 DOI: 10.1038/nature18309  0.88
2016 Wexler AG, Bao Y, Whitney JC, Bobay LM, Xavier JB, Schofield WB, Barry NA, Russell AB, Tran BQ, Goo YA, Goodlett DR, Ochman H, Mougous JD, Goodman AL. Human symbionts inject and neutralize antibacterial toxins to persist in the gut. Proceedings of the National Academy of Sciences of the United States of America. PMID 26957597 DOI: 10.1073/pnas.1525637113  0.88
2015 Tan Y, Zanoni I, Cullen TW, Goodman AL, Kagan JC. Mechanisms of Toll-like Receptor 4 Endocytosis Reveal a Common Immune-Evasion Strategy Used by Pathogenic and Commensal Bacteria. Immunity. PMID 26546281 DOI: 10.1016/j.immuni.2015.10.008  0.88
2015 Peterson DA, Planer JD, Guruge JL, Xue L, Downey-Virgin W, Goodman AL, Seedorf H, Gordon JI. Characterizing the interactions between a naturally primed immunoglobulin A and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice. The Journal of Biological Chemistry. 290: 12630-49. PMID 25795776 DOI: 10.1074/jbc.M114.633800  0.88
2015 Cullen TW, Schofield WB, Barry NA, Putnam EE, Rundell EA, Trent MS, Degnan PH, Booth CJ, Yu H, Goodman AL. Gut microbiota. Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation. Science (New York, N.Y.). 347: 170-5. PMID 25574022 DOI: 10.1126/science.1260580  0.72
2015 Cullen TW, Schofield WB, Barry NA, Putnam EE, Rundell EA, Trent MS, Degnan PH, Booth CJ, Yu H, Goodman AL. Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation Science. 347: 170-175. DOI: 10.1126/science.1260580  0.88
2014 Degnan PH, Taga ME, Goodman AL. Vitamin B12 as a modulator of gut microbial ecology. Cell Metabolism. 20: 769-78. PMID 25440056 DOI: 10.1016/j.cmet.2014.10.002  0.72
2014 Brooks JF, Gyllborg MC, Cronin DC, Quillin SJ, Mallama CA, Foxall R, Whistler C, Goodman AL, Mandel MJ. Global discovery of colonization determinants in the squid symbiont Vibrio fischeri. Proceedings of the National Academy of Sciences of the United States of America. 111: 17284-9. PMID 25404340 DOI: 10.1073/pnas.1415957111  0.88
2014 Palm NW, de Zoete MR, Cullen TW, Barry NA, Stefanowski J, Hao L, Degnan PH, Hu J, Peter I, Zhang W, Ruggiero E, Cho JH, Goodman AL, Flavell RA. Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease. Cell. 158: 1000-10. PMID 25171403 DOI: 10.1016/j.cell.2014.08.006  0.88
2014 Russell AB, Wexler AG, Harding BN, Whitney JC, Bohn AJ, Goo YA, Tran BQ, Barry NA, Zheng H, Peterson SB, Chou S, Gonen T, Goodlett DR, Goodman AL, Mougous JD. A type VI secretion-related pathway in Bacteroidetes mediates interbacterial antagonism. Cell Host & Microbe. 16: 227-36. PMID 25070807 DOI: 10.1016/j.chom.2014.07.007  0.88
2014 Gao B, Lara-Tejero M, Lefebre M, Goodman AL, Galán JE. Novel components of the flagellar system in epsilonproteobacteria Mbio. 5. PMID 24961693 DOI: 10.1128/mBio.01349-14  0.88
2014 Degnan PH, Barry NA, Mok KC, Taga ME, Goodman AL. Human gut microbes use multiple transporters to distinguish vitamin B 12 analogs and compete in the gut Cell Host and Microbe. 15: 47-57. PMID 24439897 DOI: 10.1016/j.chom.2013.12.007  0.88
2014 Degnan PH, Taga ME, Goodman AL. Vitamin B12 as a modulator of gut microbial ecology Cell Metabolism. 20: 769-778. DOI: 10.1016/j.cmet.2014.10.002  0.88
2013 Dantas G, Sommer MOA, Degnan PH, Goodman AL. Experimental approaches for defining functional roles of microbes in the human gut Annual Review of Microbiology. 67: 459-475. PMID 24024637 DOI: 10.1146/annurev-micro-092412-155642  0.88
2013 Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, Clemente JC, Knight R, Heath AC, Leibel RL, Rosenbaum M, Gordon JI. The long-term stability of the human gut microbiota. Science (New York, N.Y.). 341: 1237439. PMID 23828941 DOI: 10.1126/science.1237439  0.88
2012 Andersson SG, Goodman AL. Bacterial genomes: next generation sequencing technologies for studies of bacterial ecosystems. Current Opinion in Microbiology. 15: 603-4. PMID 23084564 DOI: 10.1016/j.mib.2012.10.001  0.88
2011 Goodman AL, Wu M, Gordon JI. Identifying microbial fitness determinants by insertion sequencing using genome-wide transposon mutant libraries Nature Protocols. 6: 1969-1980. PMID 22094732 DOI: 10.1038/nprot.2011.417  0.88
2011 McNulty NP, Yatsunenko T, Hsiao A, Faith JJ, Muegge BD, Goodman AL, Henrissat B, Oozeer R, Cools-Portier S, Gobert G, Chervaux C, Knights D, Lozupone CA, Knight R, Duncan AE, et al. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Science Translational Medicine. 3: 106ra106. PMID 22030749 DOI: 10.1126/scitranslmed.3002701  0.88
2011 Kau AL, Ahern PP, Griffin NW, Goodman AL, Gordon JI. Human nutrition, the gut microbiome and the immune system. Nature. 474: 327-36. PMID 21677749 DOI: 10.1038/nature10213  0.88
2011 Goodman AL, Kallstrom G, Faith JJ, Reyes A, Moore A, Dantas G, Gordon JI. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice Proceedings of the National Academy of Sciences of the United States of America. 108: 6252-6257. PMID 21436049 DOI: 10.1073/pnas.1102938108  0.88
2010 Goodman AL. Sit and stay a while: How BfiSR controls irreversible attachment in Pseudomonas aeruginosa biofilms Journal of Bacteriology. 192: 5273-5274. PMID 20693324 DOI: 10.1128/JB.00888-10  0.88
2010 Goodman AL, Gordon JI. Our unindicted coconspirators: Human metabolism from a microbial perspective Cell Metabolism. 12: 111-116. PMID 20674856 DOI: 10.1016/j.cmet.2010.07.001  0.88
2010 Faith JJ, Rey FE, O'Donnell D, Karlsson M, McNulty NP, Kallstrom G, Goodman AL, Gordon JI. Creating and characterizing communities of human gut microbes in gnotobiotic mice Isme Journal. 4: 1094-1098. PMID 20664551 DOI: 10.1038/ismej.2010.110  0.88
2010 Hurley BP, Goodman AL, Mumy KL, Murphy P, Lory S, McCormick BA. The two-component sensor response regulator RoxS/RoxR plays a role in Pseudomonas aeruginosa interactions with airway epithelial cells Microbes and Infection. 12: 190-198. PMID 19961952 DOI: 10.1016/j.micinf.2009.11.009  0.88
2009 Goodman AL, McNulty NP, Zhao Y, Leip D, Mitra RD, Lozupone CA, Knight R, Gordon JI. Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host & Microbe. 6: 279-89. PMID 19748469 DOI: 10.1016/j.chom.2009.08.003  0.88
2009 Goodman AL, Merighi M, Hyodo M, Ventre I, Filloux A, Lory S. Direct interaction between sensor kinase proteins mediates acute and chronic disease phenotypes in a bacterial pathogen Genes and Development. 23: 249-259. PMID 19171785 DOI: 10.1101/gad.1739009  0.88
2007 Rawls JF, Mahowald MA, Goodman AL, Trent CM, Gordon JI. In vivo imaging and genetic analysis link bacterial motility and symbiosis in the zebrafish gut. Proceedings of the National Academy of Sciences of the United States of America. 104: 7622-7. PMID 17456593 DOI: 10.1073/pnas.0702386104  0.88
2007 Ventre I, Goodman AL, Filloux A, Lory S. Modulation of bacterial lifestyles via two-component regulatory networks Pseudomonas. 5: 311-340. DOI: 10.1007/978-1-4020-6097-7_11  0.88
2006 Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford CA, Goodman AL, Joachimiak G, Ordoñez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ. A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. Science (New York, N.Y.). 312: 1526-30. PMID 16763151 DOI: 10.1126/science.1128393  0.88
2006 Ventre I, Goodman AL, Vallet-Gely I, Vasseur P, Soscia C, Molin S, Bleves S, Lazdunski A, Lory S, Filloux A. Multiple sensors control reciprocal expression of Pseudomonas aeruginosa regulatory RNA and virulence genes. Proceedings of the National Academy of Sciences of the United States of America. 103: 171-6. PMID 16373506 DOI: 10.1073/pnas.0507407103  0.88
2004 Goodman AL, Kulasekara B, Rietsch A, Boyd D, Smith RS, Lory S. A signaling network reciprocally regulates genes associated with acute infection and chronic persistence in Pseudomonas aeruginosa. Developmental Cell. 7: 745-54. PMID 15525535 DOI: 10.1016/j.devcel.2004.08.020  0.88
2004 Seth S, Goodman AL, Compans RW. Mutations in multiple domains activate paramyxovirus F protein-induced fusion. Journal of Virology. 78: 8513-23. PMID 15280460 DOI: 10.1128/JVI.78.16.8513-8523.2004  0.88
2004 Wolfgang MC, Jyot J, Goodman AL, Ramphal R, Lory S. Pseudomonas aeruginosa regulates flagellin expression as part of a global response to airway fluid from cystic fibrosis patients. Proceedings of the National Academy of Sciences of the United States of America. 101: 6664-8. PMID 15084751 DOI: 10.1073/pnas.0307553101  0.88
2004 Goodman AL, Lory S. Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling. Current Opinion in Microbiology. 7: 39-44. PMID 15036138 DOI: 10.1016/j.mib.2003.12.009  0.88
2003 Dasgupta N, Wolfgang MC, Goodman AL, Arora SK, Jyot J, Lory S, Ramphal R. A four-tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosa. Molecular Microbiology. 50: 809-24. PMID 14617143 DOI: 10.1046/j.1365-2958.2003.03740.x  0.88
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