| Year |
Citation |
Score |
| 2023 |
Noel B, Denoeud F, Rouan A, Buitrago-López C, Capasso L, Poulain J, Boissin E, Pousse M, Da Silva C, Couloux A, Armstrong E, Carradec Q, Cruaud C, Labadie K, Lê-Hoang J, ... ... Sunagawa S, et al. Pervasive tandem duplications and convergent evolution shape coral genomes. Genome Biology. 24: 123. PMID 37264421 DOI: 10.1186/s13059-023-02960-7 |
0.59 |
|
| 2023 |
Veglia AJ, Bistolas KSI, Voolstra CR, Hume BCC, Ruscheweyh HJ, Planes S, Allemand D, Boissin E, Wincker P, Poulain J, Moulin C, Bourdin G, Iwankow G, Romac S, Agostini S, ... ... Sunagawa S, et al. Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes. Communications Biology. 6: 566. PMID 37264063 DOI: 10.1038/s42003-023-04917-9 |
0.55 |
|
| 2023 |
Belser C, Poulain J, Labadie K, Gavory F, Alberti A, Guy J, Carradec Q, Cruaud C, Da Silva C, Engelen S, Mielle P, Perdereau A, Samson G, Gas S, Voolstra CR, ... ... Sunagawa S, et al. Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition. Scientific Data. 10: 326. PMID 37264047 DOI: 10.1038/s41597-023-02204-0 |
0.604 |
|
| 2023 |
Armstrong EJ, Lê-Hoang J, Carradec Q, Aury JM, Noel B, Hume BCC, Voolstra CR, Poulain J, Belser C, Paz-García DA, Cruaud C, Labadie K, Da Silva C, Moulin C, Boissin E, ... ... Sunagawa S, et al. Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean. Nature Communications. 14: 3056. PMID 37264036 DOI: 10.1038/s41467-023-38610-6 |
0.599 |
|
| 2023 |
Lombard F, Bourdin G, Pesant S, Agostini S, Baudena A, Boissin E, Cassar N, Clampitt M, Conan P, Da Silva O, Dimier C, Douville E, Elineau A, Fin J, Flores JM, ... ... Sunagawa S, et al. Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems. Scientific Data. 10: 324. PMID 37264023 DOI: 10.1038/s41597-022-01757-w |
0.533 |
|
| 2023 |
Hochart C, Paoli L, Ruscheweyh HJ, Salazar G, Boissin E, Romac S, Poulain J, Bourdin G, Iwankow G, Moulin C, Ziegler M, Porro B, Armstrong EJ, Hume BCC, Aury JM, ... ... Sunagawa S, et al. Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean. Nature Communications. 14: 3037. PMID 37264015 DOI: 10.1038/s41467-023-38502-9 |
0.621 |
|
| 2023 |
Galand PE, Ruscheweyh HJ, Salazar G, Hochart C, Henry N, Hume BCC, Oliveira PH, Perdereau A, Labadie K, Belser C, Boissin E, Romac S, Poulain J, Bourdin G, Iwankow G, ... ... Sunagawa S, et al. Diversity of the Pacific Ocean coral reef microbiome. Nature Communications. 14: 3039. PMID 37264002 DOI: 10.1038/s41467-023-38500-x |
0.596 |
|
| 2023 |
Rouan A, Pousse M, Djerbi N, Porro B, Bourdin G, Carradec Q, Hume BC, Poulain J, Lê-Hoang J, Armstrong E, Agostini S, Salazar G, Ruscheweyh HJ, Aury JM, Paz-García DA, ... ... Sunagawa S, et al. Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals. Nature Communications. 14: 3038. PMID 37263999 DOI: 10.1038/s41467-023-38499-1 |
0.51 |
|
| 2022 |
Ruscheweyh HJ, Milanese A, Paoli L, Karcher N, Clayssen Q, Keller MI, Wirbel J, Bork P, Mende DR, Zeller G, Sunagawa S. Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments. Microbiome. 10: 212. PMID 36464731 DOI: 10.1186/s40168-022-01410-z |
0.319 |
|
| 2022 |
Paoli L, Ruscheweyh HJ, Forneris CC, Hubrich F, Kautsar S, Bhushan A, Lotti A, Clayssen Q, Salazar G, Milanese A, Carlström CI, Papadopoulou C, Gehrig D, Karasikov M, Mustafa H, ... ... Sunagawa S, et al. Biosynthetic potential of the global ocean microbiome. Nature. PMID 35732736 DOI: 10.1038/s41586-022-04862-3 |
0.335 |
|
| 2022 |
Vernette C, Lecubin J, Sánchez P, Sunagawa S, Delmont TO, Acinas SG, Pelletier E, Hingamp P, Lescot M. The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. Nucleic Acids Research. PMID 35687095 DOI: 10.1093/nar/gkac420 |
0.316 |
|
| 2021 |
Coelho LP, Alves R, Del Río ÁR, Myers PN, Cantalapiedra CP, Giner-Lamia J, Schmidt TS, Mende DR, Orakov A, Letunic I, Hildebrand F, Van Rossum T, Forslund SK, Khedkar S, Maistrenko OM, ... ... Sunagawa S, et al. Towards the biogeography of prokaryotic genes. Nature. PMID 34912116 DOI: 10.1038/s41586-021-04233-4 |
0.338 |
|
| 2021 |
Van Rossum T, Costea PI, Paoli L, Alves R, Thielemann R, Sunagawa S, Bork P. metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes. Bioinformatics (Oxford, England). PMID 34791031 DOI: 10.1093/bioinformatics/btab789 |
0.316 |
|
| 2021 |
Royo-Llonch M, Sánchez P, Ruiz-González C, Salazar G, Pedrós-Alió C, Sebastián M, Labadie K, Paoli L, M Ibarbalz F, Zinger L, Churcheward B, Chaffron S, Eveillard D, Karsenti E, ... Sunagawa S, et al. Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean. Nature Microbiology. PMID 34782724 DOI: 10.1038/s41564-021-00979-9 |
0.331 |
|
| 2021 |
Maier BA, Kiefer P, Field CM, Hemmerle L, Bortfeld-Miller M, Emmenegger B, Schäfer M, Pfeilmeier S, Sunagawa S, Vogel CM, Vorholt JA. A general non-self response as part of plant immunity. Nature Plants. 7: 696-705. PMID 34007033 DOI: 10.1038/s41477-021-00913-1 |
0.302 |
|
| 2021 |
Zünd M, Ruscheweyh HJ, Field CM, Meyer N, Cuenca M, Hoces D, Hardt WD, Sunagawa S. High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains. Microbiome. 9: 77. PMID 33781335 DOI: 10.1186/s40168-021-01033-w |
0.307 |
|
| 2021 |
Dittami SM, Arboleda E, Auguet JC, Bigalke A, Briand E, Cárdenas P, Cardini U, Decelle J, Engelen AH, Eveillard D, Gachon CMM, Griffiths SM, Harder T, Kayal E, Kazamia E, ... ... Sunagawa S, et al. A community perspective on the concept of marine holobionts: current status, challenges, and future directions. Peerj. 9: e10911. PMID 33665032 DOI: 10.7717/peerj.10911 |
0.63 |
|
| 2020 |
Maistrenko OM, Mende DR, Luetge M, Hildebrand F, Schmidt TSB, Li SS, Rodrigues JFM, von Mering C, Pedro Coelho L, Huerta-Cepas J, Sunagawa S, Bork P. Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity. The Isme Journal. PMID 32047279 DOI: 10.1038/S41396-020-0600-Z |
0.354 |
|
| 2019 |
Salazar G, Paoli L, Alberti A, Huerta-Cepas J, Ruscheweyh HJ, Cuenca M, Field CM, Coelho LP, Cruaud C, Engelen S, Gregory AC, Labadie K, Marec C, Pelletier E, Royo-Llonch M, ... ... Sunagawa S, et al. Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome. Cell. 179: 1068-1083.e21. PMID 31730850 DOI: 10.1016/J.Cell.2019.10.014 |
0.311 |
|
| 2019 |
Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Bourdin G, Bowler C, Douville E, Flores JM, Forcioli D, Furla P, Galand PE, Ghiglione JF, Gilson E, ... ... Sunagawa S, et al. The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean. Plos Biology. 17: e3000483. PMID 31545807 DOI: 10.1371/Journal.Pbio.3000483 |
0.61 |
|
| 2019 |
Milanese A, Mende DR, Paoli L, Salazar G, Ruscheweyh HJ, Cuenca M, Hingamp P, Alves R, Costea PI, Coelho LP, Schmidt TSB, Almeida A, Mitchell AL, Finn RD, Huerta-Cepas J, ... ... Sunagawa S, et al. Microbial abundance, activity and population genomic profiling with mOTUs2. Nature Communications. 10: 1014. PMID 30833550 DOI: 10.1038/S41467-019-08844-4 |
0.336 |
|
| 2018 |
Carradec Q, Pelletier E, Da Silva C, Alberti A, Seeleuthner Y, Blanc-Mathieu R, Lima-Mendez G, Rocha F, Tirichine L, Labadie K, Kirilovsky A, Bertrand A, Engelen S, Madoui MA, Méheust R, ... ... Sunagawa S, et al. A global ocean atlas of eukaryotic genes. Nature Communications. 9: 373. PMID 29371626 DOI: 10.1038/S41467-017-02342-1 |
0.372 |
|
| 2017 |
Costea PI, Coelho LP, Sunagawa S, Munch R, Huerta-Cepas J, Forslund K, Hildebrand F, Kushugulova A, Zeller G, Bork P. Subspecies in the global human gut microbiome. Molecular Systems Biology. 13: 960. PMID 29242367 DOI: 10.15252/Msb.20177589 |
0.385 |
|
| 2015 |
Heras J, McClintock K, Sunagawa S, Aguilar A. Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes). Bmc Genomics. 16: 656. PMID 26329285 DOI: 10.1186/S12864-015-1870-0 |
0.351 |
|
| 2015 |
de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, ... ... Sunagawa S, et al. Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean. Science (New York, N.Y.). 348: 1261605. PMID 25999516 DOI: 10.1126/Science.1261605 |
0.32 |
|
| 2015 |
Sunagawa S, Coelho LP, Chaffron S, Kultima JR, Labadie K, Salazar G, Djahanschiri B, Zeller G, Mende DR, Alberti A, Cornejo-Castillo FM, Costea PI, Cruaud C, d'Ovidio F, Engelen S, et al. Ocean plankton. Structure and function of the global ocean microbiome. Science (New York, N.Y.). 348: 1261359. PMID 25999513 DOI: 10.1126/Science.1261359 |
0.344 |
|
| 2015 |
Zhu A, Sunagawa S, Mende DR, Bork P. Inter-individual differences in the gene content of human gut bacterial species. Genome Biology. 16: 82. PMID 25896518 DOI: 10.1186/S13059-015-0646-9 |
0.333 |
|
| 2014 |
Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, Arumugam M, Kultima JR, Prifti E, Nielsen T, Juncker AS, Manichanh C, Chen B, Zhang W, Levenez F, et al. An integrated catalog of reference genes in the human gut microbiome. Nature Biotechnology. 32: 834-41. PMID 24997786 DOI: 10.1038/Nbt.2942 |
0.321 |
|
| 2014 |
Closek CJ, Sunagawa S, DeSalvo MK, Piceno YM, DeSantis TZ, Brodie EL, Weber MX, Voolstra CR, Andersen GL, Medina M. Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata. The Isme Journal. 8: 2411-22. PMID 24950107 DOI: 10.1038/ismej.2014.85 |
0.668 |
|
| 2013 |
Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, et al. Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. The Isme Journal. 7: 1678-95. PMID 23575371 DOI: 10.1038/Ismej.2013.59 |
0.343 |
|
| 2012 |
Bayer T, Aranda M, Sunagawa S, Yum LK, Desalvo MK, Lindquist E, Coffroth MA, Voolstra CR, Medina M. Symbiodinium transcriptomes: genome insights into the dinoflagellate symbionts of reef-building corals. Plos One. 7: e35269. PMID 22529998 DOI: 10.1371/journal.pone.0035269 |
0.735 |
|
| 2011 |
Voolstra CR, Sunagawa S, Matz MV, Bayer T, Aranda M, Buschiazzo E, Desalvo MK, Lindquist E, Szmant AM, Coffroth MA, Medina M. Rapid evolution of coral proteins responsible for interaction with the environment. Plos One. 6: e20392. PMID 21633702 DOI: 10.1371/Journal.Pone.0020392 |
0.725 |
|
| 2011 |
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, ... ... Sunagawa S, et al. Enterotypes of the human gut microbiome. Nature. 473: 174-80. PMID 21508958 DOI: 10.1038/Nature09944 |
0.333 |
|
| 2010 |
Sunagawa S, Woodley CM, Medina M. Threatened corals provide underexplored microbial habitats. Plos One. 5: e9554. PMID 20221265 DOI: 10.1371/journal.pone.0009554 |
0.644 |
|
| 2009 |
Reyes-Bermudez A, Desalvo MK, Voolstra CR, Sunagawa S, Szmant AM, Iglesias-Prieto R, Medina M. Gene expression microarray analysis encompassing metamorphosis and the onset of calcification in the scleractinian coral Montastraea faveolata. Marine Genomics. 2: 149-59. PMID 21798184 DOI: 10.1016/J.Margen.2009.07.002 |
0.712 |
|
| 2009 |
Voolstra CR, Sunagawa S, Schwarz JA, Coffroth MA, Yellowlees D, Leggat W, Medina M. Evolutionary analysis of orthologous cDNA sequences from cultured and symbiotic dinoflagellate symbionts of reef-building corals (Dinophyceae: Symbiodinium). Comparative Biochemistry and Physiology. Part D, Genomics & Proteomics. 4: 67-74. PMID 20403741 DOI: 10.1016/j.cbd.2008.11.001 |
0.733 |
|
| 2009 |
Sunagawa S, Wilson EC, Thaler M, Smith ML, Caruso C, Pringle JR, Weis VM, Medina M, Schwarz JA. Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont. Bmc Genomics. 10: 258. PMID 19500365 DOI: 10.1186/1471-2164-10-258 |
0.677 |
|
| 2009 |
Voolstra CR, Schwarz JA, Schnetzer J, Sunagawa S, Desalvo MK, Szmant AM, Coffroth MA, Medina M. The host transcriptome remains unaltered during the establishment of coral-algal symbioses. Molecular Ecology. 18: 1823-33. PMID 19317843 DOI: 10.1111/j.1365-294X.2009.04167.x |
0.718 |
|
| 2009 |
Sunagawa S, DeSalvo MK, Voolstra CR, Reyes-Bermudez A, Medina M. Identification and gene expression analysis of a taxonomically restricted cysteine-rich protein family in reef-building corals. Plos One. 4: e4865. PMID 19283069 DOI: 10.1371/journal.pone.0004865 |
0.696 |
|
| 2009 |
Sunagawa S, DeSantis TZ, Piceno YM, Brodie EL, DeSalvo MK, Voolstra CR, Weil E, Andersen GL, Medina M. Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolata. The Isme Journal. 3: 512-21. PMID 19129866 DOI: 10.1038/Ismej.2008.131 |
0.726 |
|
| 2008 |
Sunagawa S, Choi J, Forman HJ, Medina M. Hyperthermic stress-induced increase in the expression of glutamate-cysteine ligase and glutathione levels in the symbiotic sea anemone Aiptasia pallida. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. 151: 133-8. PMID 18602489 DOI: 10.1016/J.Cbpb.2008.06.007 |
0.593 |
|
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