| Year |
Citation |
Score |
| 2023 |
Hara Y, Kuraku S. The impact of local genomic properties on the evolutionary fate of genes. Elife. 12. PMID 37223962 DOI: 10.7554/eLife.82290 |
0.658 |
|
| 2023 |
Linz DM, Hara Y, Deem KD, Kuraku S, Hayashi S, Tomoyasu Y. Transcriptomic exploration of the Coleopteran wings reveals insight into the evolution of novel structures associated with the beetle elytron. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. PMID 36617687 DOI: 10.1002/jez.b.23188 |
0.647 |
|
| 2020 |
Kadota M, Yamaguchi K, Hara Y, Kuraku S. Early vertebrate origin of CTCFL, a CTCF paralog, revealed by proximity-guided shark genome scaffolding. Scientific Reports. 10: 14629. PMID 32884037 DOI: 10.1038/S41598-020-71602-W |
0.675 |
|
| 2020 |
Kajikawa E, Horo U, Ide T, Mizuno K, Minegishi K, Hara Y, Ikawa Y, Nishimura H, Uchikawa M, Kiyonari H, Kuraku S, Hamada H. Nodal paralogues underlie distinct mechanisms for visceral left-right asymmetry in reptiles and mammals. Nature Ecology & Evolution. PMID 31907383 DOI: 10.1038/S41559-019-1072-2 |
0.529 |
|
| 2019 |
Imaseki I, Wakabayashi M, Hara Y, Watanabe T, Takabe S, Kakumura K, Honda Y, Ueda K, Murakumo K, Matsumoto R, Matsumoto Y, Nakamura M, Takagi W, Kuraku S, Hyodo S. Comprehensive analysis of genes contributing to euryhalinity in the bull shark, ; Na-Cl co-transporter is one of the key renal factors up-regulated in acclimation to low-salinity environment in bull sharks, but not in houndsharks, . The Journal of Experimental Biology. PMID 31138636 DOI: 10.1242/Jeb.201780 |
0.571 |
|
| 2019 |
Nishimura O, Hara Y, Kuraku S. Evaluating Genome Assemblies and Gene Models Using gVolante. Methods in Molecular Biology (Clifton, N.J.). 1962: 247-256. PMID 31020565 DOI: 10.1007/978-1-4939-9173-0_15 |
0.607 |
|
| 2018 |
Hara Y, Yamaguchi K, Onimaru K, Kadota M, Koyanagi M, Keeley SD, Tatsumi K, Tanaka K, Motone F, Kageyama Y, Nozu R, Adachi N, Nishimura O, Nakagawa R, Tanegashima C, et al. Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates. Nature Ecology & Evolution. 2: 1761-1771. PMID 30297745 DOI: 10.1038/S41559-018-0673-5 |
0.688 |
|
| 2018 |
Hara Y, Takeuchi M, Kageyama Y, Tatsumi K, Hibi M, Kiyonari H, Kuraku S. Madagascar ground gecko genome analysis characterizes asymmetric fates of duplicated genes. Bmc Biology. 16: 40. PMID 29661185 DOI: 10.1186/S12915-018-0509-4 |
0.645 |
|
| 2017 |
Nishimura O, Hara Y, Kuraku S. gVolante for standardizing completeness assessment of genome and transcriptome assemblies. Bioinformatics (Oxford, England). PMID 29036533 DOI: 10.1093/Bioinformatics/Btx445 |
0.587 |
|
| 2017 |
Kadota M, Hara Y, Tanaka K, Takagi W, Tanegashima C, Nishimura O, Kuraku S. CTCF binding landscape in jawless fish with reference to Hox cluster evolution. Scientific Reports. 7: 4957. PMID 28694486 DOI: 10.1038/S41598-017-04506-X |
0.56 |
|
| 2016 |
Hashimoto T, Horikawa DD, Saito Y, Kuwahara H, Kozuka-Hata H, Shin-I T, Minakuchi Y, Ohishi K, Motoyama A, Aizu T, Enomoto A, Kondo K, Tanaka S, Hara Y, Koshikawa S, et al. Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein. Nature Communications. 7: 12808. PMID 27649274 DOI: 10.1038/ncomms12808 |
0.432 |
|
| 2016 |
Takeuchi M, Yamaguchi S, Sakakibara M, Hayashi T, Matsuda K, Hara Y, Tanegashima C, Shimizu T, Kuraku S, Hibi M. Gene expression profiling of granule cells and Purkinje cells in the zebrafish cerebellum. The Journal of Comparative Neurology. PMID 27615194 DOI: 10.1002/Cne.24114 |
0.569 |
|
| 2016 |
Kuraku S, Feiner N, Keeley SD, Hara Y. Incorporating tree-thinking and evolutionary time scale into developmental biology. Development, Growth & Differentiation. 58: 131-42. PMID 26818824 DOI: 10.1111/Dgd.12258 |
0.682 |
|
| 2015 |
Hara Y, Tatsumi K, Yoshida M, Kajikawa E, Kiyonari H, Kuraku S. Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation. Bmc Genomics. 16: 977. PMID 26581708 DOI: 10.1186/S12864-015-2007-1 |
0.593 |
|
| 2015 |
Hara Y. Tempo and mode of genomic mutations unveil human evolutionary history. Genes & Genetic Systems. 90: 123-31. PMID 26510567 DOI: 10.1266/ggs.90.123 |
0.321 |
|
| 2015 |
Koyanagi M, Wada S, Kawano-Yamashita E, Hara Y, Kuraku S, Kosaka S, Kawakami K, Tamotsu S, Tsukamoto H, Shichida Y, Terakita A. Diversification of non-visual photopigment parapinopsin in spectral sensitivity for diverse pineal functions. Bmc Biology. 13: 73. PMID 26370232 DOI: 10.1186/S12915-015-0174-9 |
0.526 |
|
| 2013 |
Takeda J, Yamasaki C, Murakami K, Nagai Y, Sera M, Hara Y, Obi N, Habara T, Gojobori T, Imanishi T. H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery. Nucleic Acids Research. 41: D915-9. PMID 23197657 DOI: 10.1093/Nar/Gks1245 |
0.361 |
|
| 2012 |
Hayashida K, Hara Y, Abe T, Yamasaki C, Toyoda A, Kosuge T, Suzuki Y, Sato Y, Kawashima S, Katayama T, Wakaguri H, Inoue N, Homma K, Tada-Umezaki M, Yagi Y, et al. Comparative genome analysis of three eukaryotic parasites with differing abilities to transform leukocytes reveals key mediators of Theileria-induced leukocyte transformation. Mbio. 3: e00204-12. PMID 22951932 DOI: 10.1128/Mbio.00204-12 |
0.309 |
|
| 2005 |
Iwabe N, Hara Y, Kumazawa Y, Shibamoto K, Saito Y, Miyata T, Katoh K. Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins. Molecular Biology and Evolution. 22: 810-3. PMID 15625185 DOI: 10.1093/molbev/msi075 |
0.565 |
|
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