Dominique Mouchiroud, Ph.D. - Publications

Affiliations: 
LBBE, UMR5558 Université Lyon 1, Université de Lyon 
Area:
molecular evolution

54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Lesecque Y, Glémin S, Lartillot N, Mouchiroud D, Duret L. The red queen model of recombination hotspots evolution in the light of archaic and modern human genomes. Plos Genetics. 10: e1004790. PMID 25393762 DOI: 10.1371/journal.pgen.1004790  0.6
2013 Lesecque Y, Mouchiroud D, Duret L. GC-biased gene conversion in yeast is specifically associated with crossovers: molecular mechanisms and evolutionary significance. Molecular Biology and Evolution. 30: 1409-19. PMID 23505044 DOI: 10.1093/molbev/mst056  0.6
2012 Popa A, Samollow P, Gautier C, Mouchiroud D. The sex-specific impact of meiotic recombination on nucleotide composition. Genome Biology and Evolution. 4: 412-22. PMID 22417915 DOI: 10.1093/gbe/evs023  0.6
2011 NecÅŸulea A, Popa A, Cooper DN, Stenson PD, Mouchiroud D, Gautier C, Duret L. Meiotic recombination favors the spreading of deleterious mutations in human populations. Human Mutation. 32: 198-206. PMID 21120948 DOI: 10.1002/humu.21407  0.6
2010 Tavares R, Cagnon M, Negrutiu I, Mouchiroud D. Testing the recent theories for the origin of the hermaphrodite flower by comparison of the transcriptomes of gymnosperms and angiosperms Bmc Evolutionary Biology. 10. DOI: 10.1186/1471-2148-10-240  0.6
2008 Navratil V, Penel S, Delmotte S, Mouchiroud D, Gautier C, Aouacheria A. DigiPINS: a database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies. Biochimie. 90: 563-9. PMID 17988782 DOI: 10.1016/j.biochi.2007.09.017  0.6
2007 Keime C, Sémon M, Mouchiroud D, Duret L, Gandrillon O. Unexpected observations after mapping LongSAGE tags to the human genome. Bmc Bioinformatics. 8: 154. PMID 17504516 DOI: 10.1186/1471-2105-8-154  0.6
2007 Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C. In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions. Bmc Genomics. 8: 2. PMID 17201911 DOI: 10.1186/1471-2164-8-2  0.6
2006 Khelifi A, Meunier J, Duret L, Mouchiroud D. GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates. Journal of Molecular Evolution. 62: 745-52. PMID 16752212 DOI: 10.1007/s00239-005-0186-0  0.6
2006 Aouacheria A, Navratil V, Barthelaix A, Mouchiroud D, Gautier C. Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues. Bmc Genomics. 7: 94. PMID 16640784 DOI: 10.1186/1471-2164-7-94  0.6
2006 de Laplanche E, Gouget K, Cléris G, Dragounoff F, Demont J, Morales A, Bezin L, Godinot C, Perrière G, Mouchiroud D, Simonnet H. Physiological oxygenation status is required for fully differentiated phenotype in kidney cortex proximal tubules. American Journal of Physiology. Renal Physiology. 291: F750-60. PMID 16597615 DOI: 10.1152/ajprenal.00022.2006  0.6
2005 Aouacheria A, Navratil V, Wen W, Jiang M, Mouchiroud D, Gautier C, Gouy M, Zhang M. In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant. Oncogene. 24: 6133-42. PMID 15897869 DOI: 10.1038/sj.onc.1208745  0.6
2005 Nicolas M, Marais G, Hykelova V, Janousek B, Laporte V, Vyskot B, Mouchiroud D, Negrutiu I, Charlesworth D, Monéger F. A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants Plos Biology. 3. PMID 15630476 DOI: 10.1371/journal.pbio.0030004  0.6
2005 Sémon M, Mouchiroud D, Duret L. Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance. Human Molecular Genetics. 14: 421-7. PMID 15590696 DOI: 10.1093/hmg/ddi038  0.6
2004 Keime C, Damiola F, Mouchiroud D, Duret L, Gandrillon O. Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. Bmc Bioinformatics. 5: 143. PMID 15469608 DOI: 10.1186/1471-2105-5-143  0.6
2003 Marais G, Mouchiroud D, Duret L. Neutral effect of recombination on base composition in Drosophila. Genetical Research. 81: 79-87. PMID 12872909 DOI: 10.1017/S0016672302006079  0.6
2002 Duret L, Semon M, Piganeau G, Mouchiroud D, Galtier N. Vanishing GC-rich isochores in mammalian genomes. Genetics. 162: 1837-47. PMID 12524353  0.6
2002 Ponger L, Mouchiroud D. CpGProD: Identifying CpG islands associated with transcription start sites in large genomic mammalian sequences Bioinformatics. 18: 631-633. PMID 12016061  0.6
2002 Piganeau G, Mouchiroud D, Duret L, Gautier C. Expected relationship between the silent substitution rate and the GC content: implications for the evolution of isochores. Journal of Molecular Evolution. 54: 129-33. PMID 11734906 DOI: 10.1007/s00239-001-0011-3  0.6
2002 Valière N, Berthier P, Mouchiroud D, Pontier D. Gemini: Software for testing the effects of genotyping errors and multitubes approach for individual identification Molecular Ecology Notes. 2: 83-86.  0.6
2001 Galtier N, Piganeau G, Mouchiroud D, Duret L. GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics. 159: 907-11. PMID 11693127  0.6
2001 Ponger L, Duret L, Mouchiroud D. Determinants of CpG islands: expression in early embryo and isochore structure. Genome Research. 11: 1854-60. PMID 11691850 DOI: 10.1101/gr.174501  0.6
2001 Hughes S, Mouchiroud D. High evolutionary rates in nuclear genes of squamates Journal of Molecular Evolution. 53: 70-76. PMID 11683325  0.6
2001 Marais G, Mouchiroud D, Duret L. Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes. Proceedings of the National Academy of Sciences of the United States of America. 98: 5688-92. PMID 11320215 DOI: 10.1073/pnas.091427698  0.6
2000 Robinson-Rechavi M, Ponger L, Mouchiroud D. Nuclear gene LCAT supports rodent monophyly. Molecular Biology and Evolution. 17: 1410-2. PMID 10960041  0.6
2000 Gonçalves I, Duret L, Mouchiroud D. Nature and structure of human genes that generate retropseudogenes. Genome Research. 10: 672-8. PMID 10810090 DOI: 10.1101/gr.10.5.672  0.6
2000 Duret L, Mouchiroud D. Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate. Molecular Biology and Evolution. 17: 68-74. PMID 10666707  0.6
1999 Charles H, Mouchiroud D, Lobry J, Gonçalves I, Rahbe Y. Gene size reduction in the bacterial aphid endosymbiont, Buchnera [4] Molecular Biology and Evolution. 16: 1820-1822. PMID 10605125  0.6
1999 Hughes S, Zelus D, Mouchiroud D. Warm-blooded isochore structure in Nile crocodile and turtle Molecular Biology and Evolution. 16: 1521-1527. PMID 10555283  0.6
1999 Gonçalves I, Robinson M, Perrière G, Mouchiroud D. JaDis: computing distances between nucleic acid sequences. Bioinformatics (Oxford, England). 15: 424-5. PMID 10366663 DOI: 10.1093/bioinformatics/15.5.424  0.6
1999 Duret L, Mouchiroud D. Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America. 96: 4482-7. PMID 10200288 DOI: 10.1073/pnas.96.8.4482  0.6
1998 Galtier N, Mouchiroud D. Isochore evolution in mammals: a human-like ancestral structure. Genetics. 150: 1577-84. PMID 9832533  0.6
1998 Robinson M, Gouy M, Gautier C, Mouchiroud D. Sensitivity of the relative-rate test to taxonomic sampling. Molecular Biology and Evolution. 15: 1091-8. PMID 9729873  0.6
1997 Mouchiroud D, Robinson M, Gautier C. Impact of changes in GC content on the silent molecular clock in murids Gene. 205: 317-322. PMID 9461406 DOI: 10.1016/S0378-1119(97)00480-0  0.6
1997 Robinson M, Catzeflis F, Briolay J, Mouchiroud D. Molecular Phylogeny of Rodents, with Special Emphasis on Murids: Evidence from Nuclear Gene LCAT Molecular Phylogenetics and Evolution. 8: 423-434. PMID 9417899 DOI: 10.1006/mpev.1997.0424  0.6
1997 Robinson M, Gautier C, Mouchiroud D. Evolution of isochores in rodents Molecular Biology and Evolution. 14: 823-828. PMID 9254920  0.6
1997 Bernardi G, Hughes S, Mouchiroud D. The major compositional transitions in the vertebrate genome Journal of Molecular Evolution. 44: S44-S51. PMID 9071011  0.6
1996 Clay O, Cacciò S, Zoubak S, Mouchiroud D, Bernardi G. Human coding and noncoding DNA: Compositional correlations Molecular Phylogenetics and Evolution. 5: 2-12. PMID 8673288 DOI: 10.1006/mpev.1996.0002  0.6
1995 Duret L, Mouchiroud D, Gautier C. Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores. Journal of Molecular Evolution. 40: 308-17. PMID 7723057 DOI: 10.1007/BF00163235  0.6
1995 Mouchiroud D, Gautier C, Bernardi G. Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions Journal of Molecular Evolution. 40: 107-113. PMID 7714909 DOI: 10.1007/BF00166602  0.6
1994 Duret L, Mouchiroud D, Gouy M. HOVERGEN: a database of homologous vertebrate genes. Nucleic Acids Research. 22: 2360-5. PMID 8036164  0.6
1993 Mouchiroud D, Bernardi G. Compositional properties of coding sequences and mammalian phylogeny Journal of Molecular Evolution. 37: 109-116. PMID 8411199 DOI: 10.1007/BF02407345  0.6
1993 Bernardi G, Mouchiroud D, Gautier C. Silent substitutions in mammalian genomes and their evolutionary implications Journal of Molecular Evolution. 37: 583-589. PMID 8114111 DOI: 10.1007/BF00182744  0.6
1993 Kadi F, Mouchiroud D, Sabeur G, Bernardi G. The compositional patterns of the avian genomes and their evolutionary implications Journal of Molecular Evolution. 37: 544-551. DOI: 10.1007/BF00160434  0.6
1992 Mounier N, Gouy M, Mouchiroud D, Prudhomme JC. Insect muscle actins differ distinctly from invertebrate and vertebrate cytoplasmic actins. Journal of Molecular Evolution. 34: 406-15. PMID 1602494 DOI: 10.1007/BF00162997  0.6
1991 Mouchiroud D, D'Onofrio G, Aïssani B, Macaya G, Gautier C, Bernardi G. The distribution of genes in the human genome. Gene. 100: 181-7. PMID 2055469 DOI: 10.1016/0378-1119(91)90364-H  0.6
1991 D'Onofrio G, Mouchiroud D, Aïssani B, Gautier C, Bernardi G. Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins Journal of Molecular Evolution. 32: 504-510. PMID 1908021 DOI: 10.1007/BF02102652  0.6
1991 Aïssani B, D'Onofrio G, Mouchiroud D, Gardiner K, Gautier C, Bernardi G. The compositional properties of human genes Journal of Molecular Evolution. 32: 493-503. PMID 1908020 DOI: 10.1007/BF02102651  0.6
1990 Mouchiroud D, Gautier C. Codon usage changes and sequence dissimilarity between human and rat Journal of Molecular Evolution. 31: 81-91. PMID 2120453 DOI: 10.1007/BF02109477  0.6
1988 Mouchiroud D, Gautier C. High codon-usage changes in mammalian genes. Molecular Biology and Evolution. 5: 192-194. PMID 3367784  0.6
1988 Bernardi G, Mouchiroud D, Gautier C. Compositional patterns in vertebrate genomes: Conservation and change in evolution Journal of Molecular Evolution. 28: 7-18. PMID 3148744 DOI: 10.1007/BF02143493  0.6
1988 Mouchiroud D, Gautier C, Bernardi G. The compositional distribution of coding sequences and DNA molecules in humans and murids Journal of Molecular Evolution. 27: 311-320. PMID 3146641 DOI: 10.1007/BF02101193  0.6
1987 Mouchiroud D, Fichant G, Bernardi G. Compositional compartmentalization and gene composition in the genome of vertebrates Journal of Molecular Evolution. 26: 198-204. PMID 3129567 DOI: 10.1007/BF02099852  0.6
1986 Mouchiroud D. Relation between base composition in non coding DNA and codon composition | RELATION ENTRE LA COMPOSITION EN BASE DE L'ADN NON CODANT DU GENE ET LA COMPOSITION EN CODON Comptes Rendus De L'Academie Des Sciences - Serie Iii. 303: 743-748. PMID 3101988  0.6
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