Claire C. Morgan, PhD - Related publications

2008-2009 ITMAT School of Medicine University of Pennsylvania, Philadelphia, PA, United States 
 2009-2012 Biotechnology Dublin City University, Dublin, County Dublin, Ireland 
 2013- Imperial College London, London, England, United Kingdom 
adaptive evolution, computational biology, mammal phylogenetics
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 van Kruistum H, Nijland R, Reznick DN, Groenen MAM, Megens HJ, Pollux BJA. Parallel genomic changes drive repeated evolution of placentas in live-bearing fish. Molecular Biology and Evolution. PMID 33620468 DOI: 10.1093/molbev/msab057   
2021 Power JJ, Pinheiro F, Pompei S, Kovacova V, Yüksel M, Rathmann I, Förster M, Lässig M, Maier B. Adaptive evolution of hybrid bacteria by horizontal gene transfer. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33649202 DOI: 10.1073/pnas.2007873118   
2021 Liu K, Liu S, Chen Y, Liu F, Zhao Y, Chen N. Complete mitochondrial genome of (Mediophyceae, Bacillariophyta). Mitochondrial Dna. Part B, Resources. 6: 1560-1562. PMID 33969218 DOI: 10.1080/23802359.2021.1916409   
2021 Ping J, Feng P, Li J, Zhang R, Su Y, Wang T. Molecular evolution and SSRs analysis based on the chloroplast genome of . Ecology and Evolution. 11: 4786-4802. PMID 33976848 DOI: 10.1002/ece3.7381   
2021 Chase MA, Ellegren H, Mugal CF. Positive selection plays a major role in shaping signatures of differentiation across the genomic landscape of two independent Ficedula flycatcher species pairs. Evolution; International Journal of Organic Evolution. PMID 33851440 DOI: 10.1111/evo.14234   
2021 Feng J, Guo Y, Yan C, Ye Y, Yan X, Li J, Xu K, Guo B, Lü Z. Novel gene rearrangement in the mitochondrial genome of Siliqua minima (Bivalvia, Adapedonta) and phylogenetic implications for Imparidentia. Plos One. 16: e0249446. PMID 33822813 DOI: 10.1371/journal.pone.0249446   
2021 Rogers TF, Pizzari T, Wright AE. Multi-copy gene family evolution on the avian W chromosome. The Journal of Heredity. PMID 33758922 DOI: 10.1093/jhered/esab016   
2021 Mohammadi S, Yang L, Harpak A, Herrera-Álvarez S, Del Pilar Rodríguez-Ordoñez M, Peng J, Zhang K, Storz JF, Dobler S, Crawford AJ, Andolfatto P. Concerted evolution reveals co-adapted amino acid substitutions in NaK-ATPase of frogs that prey on toxic toads. Current Biology : Cb. PMID 33887183 DOI: 10.1016/j.cub.2021.03.089   
2021 Qian S, Zhang Y, Lee SY. Comparative Analysis of Complete Chloroplast Genome Sequences in (Thymelaeaceae) and New Insights Into Phylogenetic Relationships. Frontiers in Genetics. 12: 643552. PMID 33790948 DOI: 10.3389/fgene.2021.643552   
2021 Qian S, Zhang Y, Lee SY. Comparative Analysis of Complete Chloroplast Genome Sequences in (Thymelaeaceae) and New Insights Into Phylogenetic Relationships. Frontiers in Genetics. 12: 643552. PMID 33790948 DOI: 10.3389/fgene.2021.643552   
2021 Singh-Babak SD, Babak T, Fraser HB, Johnson AD. Lineage-specific selection and the evolution of virulence in the clade. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33723044 DOI: 10.1073/pnas.2016818118   
2021 Zhang D, Rheindt FE, She H, Cheng Y, Song G, Jia C, Qu Y, Alström P, Lei F. Most genomic loci misrepresent the phylogeny of an avian radiation because of ancient gene flow. Systematic Biology. PMID 33787929 DOI: 10.1093/sysbio/syab024   
2021 Policarpo M, Bemis KE, Tyler JC, Metcalfe CJ, Laurenti P, Sandoz JC, Rétaux S, Casane D. Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape. Molecular Biology and Evolution. PMID 33950257 DOI: 10.1093/molbev/msab145   
2021 Qin B, Sun K, Huang X. The complete chloroplast genome of , an endangered species of genus native to China. Mitochondrial Dna. Part B, Resources. 6: 684-685. PMID 33763549 DOI: 10.1080/23802359.2021.1882352   
2021 Vargas-Aguilar AL, Yáñez-Rivera B, Vega-García PD, Gomez-Gil B. Genomic and molecular evolutionary dynamics of transcriptional response regulator genes in bacterial species of the Harveyi clade of Vibrio. Gene. 783: 145577. PMID 33737123 DOI: 10.1016/j.gene.2021.145577   
2021 Zhang H, Xie J, Wang W, Wang J. Comparison of Brassica Genomes reveals asymmetrical gene retention between functional groups of genes in recurrent polyploidizations. Plant Molecular Biology. PMID 33742369 DOI: 10.1007/s11103-021-01137-9   
2021 Zhang J, Shi SZ, Jiang Y, Zhong F, Liu G, Yu C, Lian B, Chen Y. Genome-wide investigation of the AP2/ERF superfamily and their expression under salt stress in Chinese willow (). Peerj. 9: e11076. PMID 33954030 DOI: 10.7717/peerj.11076   
2021 Wu M, Haak DC, Anderson GJ, Hahn MW, Moyle LC, Guerrero RF. Inferring the genetic basis of sex determination from the genome of a dioecious nightshade. Molecular Biology and Evolution. PMID 33769517 DOI: 10.1093/molbev/msab089   
2021 Morales-Briones DF, Gehrke B, Huang CH, Liston A, Ma H, Marx HE, Tank DC, Yang Y. Analysis of paralogs in target enrichment data pinpoints multiple ancient polyploidy events in Alchemilla s.l. (Rosaceae). Systematic Biology. PMID 33978764 DOI: 10.1093/sysbio/syab032   
2021 Qing J, Du Q, Meng Y, Liu P, Du H, Wang L. Genome-wide identification and expression pattern analysis of the ribonuclease T2 family in Eucommia ulmoides. Scientific Reports. 11: 6900. PMID 33767357 DOI: 10.1038/s41598-021-86337-5   
2021 Wei X, Li X, Chen T, Chen Z, Jin Y, Malik K, Li C. Complete chloroplast genomes of Achnatherum inebrians and comparative analyses with related species from Poaceae. Febs Open Bio. PMID 33932143 DOI: 10.1002/2211-5463.13170   
2021 Giraud D, Lima O, Rousseau-Gueutin M, Salmon A, Aïnouche M. Gene and Transposable Element Expression Evolution Following Recent and Past Polyploidy Events in (Poaceae). Frontiers in Genetics. 12: 589160. PMID 33841492 DOI: 10.3389/fgene.2021.589160   
2021 Linard B, Ebersberger I, McGlynn SE, Glover N, Mochizuki T, Patricio M, Lecompte O, Nevers Y, , Thomas PD, Gabaldón T, Sonnhammer E, Dessimoz C, Uchiyama I. Ten years of collaborative progress in the Quest for Orthologs. Molecular Biology and Evolution. PMID 33822172 DOI: 10.1093/molbev/msab098   
2021 Tian P, Xiao J, Jia Z, Guo F, Wang X, Wang W, Wang J, Huang D, Niu W. Complete mitochondrial DNA sequence of the (Scleractinia, Psammocoridae): mitogenome characterisation and phylogenetic implications. Biodiversity Data Journal. 9: e62395. PMID 33911915 DOI: 10.3897/BDJ.9.e62395   
2021 Suk HY, Jeon JY, Kim DY, Cha S, Min MS. The complete mitochondrial genome information of (Amphibia, Anura, Ranidae) and the phylogenetic implication. Mitochondrial Dna. Part B, Resources. 6: 689-690. PMID 33763550 DOI: 10.1080/23802359.2021.1882896   
2021 Cui Y, Yang H, Tian X. The complete mitochondrial genome sequence of (Hemiptera: Gerridae). Mitochondrial Dna. Part B, Resources. 6: 1016-1017. PMID 33796722 DOI: 10.1080/23802359.2021.1895001   
2021 Park TH. Complete chloroplast genome sequence of the wild diploid potato relative, . Mitochondrial Dna. Part B, Resources. 6: 1189-1191. PMID 33829083 DOI: 10.1080/23802359.2021.1902414   
2021 He X, Zheng Z, Wang Q, Zhou M, Liao G, Ge Y, Cheng R. Complete chloroplast genome sequence of the medicinal plant ramie ( L. gaud) and its phylogenetic relationship to other Urticaceae species. Mitochondrial Dna. Part B, Resources. 6: 1136-1137. PMID 33796767 DOI: 10.1080/23802359.2021.1878959   
2021 Li N, Bai JQ, Gao S, Yang L, Li J, Du SB, Wang XP. The complete molecular sequence of chloroplast genome of (L.) Sweet. Mitochondrial Dna. Part B, Resources. 6: 758-759. PMID 33763570 DOI: 10.1080/23802359.2021.1878958   
2021 Modak TH, Literman R, Puritz JB, Johnson KM, Roberts EM, Proestou D, Guo X, Gomez-Chiarri M, Schwartz RS. Extensive genome-wide duplications in the eastern oyster (). Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 376: 20200164. PMID 33813893 DOI: 10.1098/rstb.2020.0164   
2021 Li Y, Leveau A, Zhao Q, Feng Q, Lu H, Miao J, Xue Z, Martin AC, Wegel E, Wang J, Orme A, Rey MD, Karafiátová M, Vrána J, Steuernagel B, et al. Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals. Nature Communications. 12: 2563. PMID 33963185 DOI: 10.1038/s41467-021-22920-8   
2021 Haase MAB, Kominek J, Opulente DA, Shen XX, LaBella AL, Zhou X, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT. Repeated horizontal gene transfer of GALactose metabolism genes violates Dollo's law of irreversible loss. Genetics. 217. PMID 33724406 DOI: 10.1093/genetics/iyaa012   
2021 Chen D, Fu C, Lei Z, Li Y, Zhao T, Fan H, Hu T, Wang Q, Zong H. Complete mitochondrial genome and phylogenetic analysis of (Teleostei: Cypriniformes: Cyprinidae). Mitochondrial Dna. Part B, Resources. 6: 1118-1119. PMID 33796760 DOI: 10.1080/23802359.2021.1901622   
2021 Deng Y, Meng M, Fang J, Jiang H, Sun N, Lv W, Lei Y, Wang C, Bo J, Liu C, Wang Y, Yang L, He S. Genome of the butterfly hillstream loach provides insights into adaptations to torrential mountain stream life. Molecular Ecology Resources. PMID 33893720 DOI: 10.1111/1755-0998.13400   
2021 Li M, Guo G, Pidon H, Melzer M, Prina AR, Börner T, Stein N. , , Is a Strong Candidate Gene for Barley Variegation Mutant as Revealed by Genetic Mapping and Genomic Re-sequencing. Frontiers in Plant Science. 12: 664085. PMID 33936155 DOI: 10.3389/fpls.2021.664085   
2021 Tian R, Geng Y, Guo H, Yang C, Seim I, Yang G. Comparative analysis of the superoxide dismutase (SOD) gene family in Cetartiodactyla. Journal of Evolutionary Biology. PMID 33896059 DOI: 10.1111/jeb.13792   
2021 Liu B, Sun H, Zhan Q, Gai Y. The complete mitochondrial genome of (Lepidoptera: Pyralidae). Mitochondrial Dna. Part B, Resources. 6: 821-823. PMID 33763590 DOI: 10.1080/23802359.2021.1884016   
2021 Guérin C, Mouzeyar S, Roche J. The Landscape of the Genomic Distribution and the Expression of the F-Box Genes Unveil Genome Plasticity in Hexaploid Wheat during Grain Development and in Response to Heat and Drought Stress. International Journal of Molecular Sciences. 22. PMID 33803701 DOI: 10.3390/ijms22063111   
2021 Liu X, Li Z, Yan Y, Li Y, Wu H, Pei J, Yan P, Yang R, Guo X, Lan X. Selection and introgression facilitated the adaptation of Chinese native endangered cattle in extreme environments. Evolutionary Applications. 14: 860-873. PMID 33767758 DOI: 10.1111/eva.13168   
2021 Xiang L, Zhang L, Hu J. The complete chloroplast genome of , an important economic and medicinal plant endemic in China. Mitochondrial Dna. Part B, Resources. 6: 1025-1027. PMID 33796726 DOI: 10.1080/23802359.2021.1895691   
2021 Xia L, Qin Y, Liu J, Zhang H, Wu L, Gao S, Zhuang M, Xia J, Zhao S, Xu Y, Fu M, Sun Y, Tong Y, Zhang J, He P. Complete chloroplast genome of (Ulvales: Ulvaceae). Mitochondrial Dna. Part B, Resources. 6: 720-722. PMID 33763560 DOI: 10.1080/23802359.2020.1860696   
2021 Wang H, Zhang Y, Tong L, Tian Y, Jiang X, Xu X. The complete chloroplast genome sequence of (Lour.) G. Don (Styracaceae). Mitochondrial Dna. Part B, Resources. 6: 774-775. PMID 33763575 DOI: 10.1080/23802359.2021.1882351   
2021 Tria FDK, Brueckner J, Skejo J, Xavier JC, Kapust N, Knopp M, Wimmer JLE, Nagies FSP, Zimorski V, Gould SB, Garg SG, Martin WF. Gene duplications trace mitochondria to the onset of eukaryote complexity. Genome Biology and Evolution. PMID 33739376 DOI: 10.1093/gbe/evab055   
2021 Balart-García P, Cieslak A, Escuer P, Rozas J, Ribera I, Fernández R. Smelling in the dark: phylogenomic insights into the chemosensory system of a subterranean beetle. Molecular Ecology. PMID 33856058 DOI: 10.1111/mec.15921   
2021 Yang C, Zhou Y, Marcus S, Formenti G, Bergeron LA, Song Z, Bi X, Bergman J, Rousselle MMC, Zhou C, Zhou L, Deng Y, Fang M, Xie D, Zhu Y, et al. Evolutionary and biomedical insights from a marmoset diploid genome assembly. Nature. PMID 33910227 DOI: 10.1038/s41586-021-03535-x   
2021 Wang X, Zeng S. The complete mitochondrial genome of (Cyprinidae: Labeoninae). Mitochondrial Dna. Part B, Resources. 6: 1351-1352. PMID 33889746 DOI: 10.1080/23802359.2021.1907799   
2021 LaBella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Signatures of optimal codon usage in metabolic genes inform budding yeast ecology. Plos Biology. 19: e3001185. PMID 33872297 DOI: 10.1371/journal.pbio.3001185   
2021 Christmas MJ, Jones JC, Olsson A, Wallerman O, Bunikis I, Kierczak M, Peona V, Whitley KM, Larva T, Suh A, Miller-Struttmann NE, Geib JC, Webster MT. Genetic barriers to historical gene flow between cryptic species of alpine bumblebees revealed by comparative population genomics. Molecular Biology and Evolution. PMID 33823537 DOI: 10.1093/molbev/msab086   
2021 Castillo AI, Almeida RPP. Evidence of gene nucleotide composition favoring replication and growth in a fastidious plant pathogen. G3 (Bethesda, Md.). PMID 33715000 DOI: 10.1093/g3journal/jkab076   
2021 Forsythe ES, Williams AM, Sloan DB. Genome-wide signatures of plastid-nuclear coevolution point to repeated perturbations of plastid proteostasis systems across angiosperms. The Plant Cell. PMID 33764472 DOI: 10.1093/plcell/koab021