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Timothy A. Johnson - Publications

Affiliations: 
2013 Crop and Soil Sciences- Environmental Toxicology - Doctor of Philosophy Michigan State University, East Lansing, MI 
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Fu Y, Dou Q, Smalla K, Wang Y, Johnson TA, Brandt KK, Mei Z, Liao M, Hashsham SA, Schäffer A, Smidt H, Zhang T, Li H, Stedtfeld R, Sheng H, et al. Gut microbiota research nexus: One Health relationship between human, animal, and environmental resistomes. Mlife. 2: 350-364. PMID 38818274 DOI: 10.1002/mlf2.12101  0.507
2023 Kim JJ, Seong HJ, Johnson TA, Cha CJ, Sul WJ, Chae JC. Persistence of antibiotic resistance from animal agricultural effluents to surface water revealed by genome-centric metagenomics. Journal of Hazardous Materials. 457: 131761. PMID 37290355 DOI: 10.1016/j.jhazmat.2023.131761  0.637
2022 Hayer SS, Casanova-Higes A, Paladino E, Elnekave E, Nault A, Johnson T, Bender J, Perez A, Alvarez J. Global Distribution of Extended Spectrum Cephalosporin and Carbapenem Resistance and Associated Resistance Markers in of Swine Origin - A Systematic Review and Meta-Analysis. Frontiers in Microbiology. 13: 853810. PMID 35620091 DOI: 10.3389/fmicb.2022.853810  0.352
2022 Muurinen J, Cairns J, Ekakoro JE, Wickware CL, Ruple A, Johnson TA. Biological units of antimicrobial resistance and strategies for their containment in animal production. Fems Microbiology Ecology. PMID 35587376 DOI: 10.1093/femsec/fiac060  0.343
2021 Muurinen J, Richert J, Wickware CL, Richert B, Johnson TA. Swine growth promotion with antibiotics or alternatives can increase antibiotic resistance gene mobility potential. Scientific Reports. 11: 5485. PMID 33750827 DOI: 10.1038/s41598-021-84759-9  0.389
2020 Yarlagadda V, Medina R, Johnson TA, Koteva KP, Cox G, Thaker MN, Wright GD. Resistance-Guided Discovery of Elfamycin Antibiotic Producers with Antigonococcal Activity. Acs Infectious Diseases. PMID 33164482 DOI: 10.1021/acsinfecdis.0c00467  0.373
2020 Hayer SS, Lim S, Hong S, Elnekave E, Johnson T, Rovira A, Vannucci F, Clayton JB, Perez A, Alvarez J. Genetic Determinants of Resistance to Extended-Spectrum Cephalosporin and Fluoroquinolone in Escherichia coli Isolated from Diseased Pigs in the United States. Msphere. 5. PMID 33115839 DOI: 10.1128/mSphere.00990-20  0.363
2019 Wickware CL, Johnson TA, Koziol JH. Composition and diversity of the preputial microbiota in healthy bulls. Theriogenology. PMID 31732161 DOI: 10.1016/J.Theriogenology.2019.11.002  0.352
2019 Johnson TA, Sylte MJ, Looft T. In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner. Scientific Reports. 9: 8212. PMID 31160613 DOI: 10.1038/S41598-019-44338-5  0.392
2019 Sylte MJ, Johnson TA, Meyer EL, Inbody MH, Trachsel J, Looft T, Susta L, Wu Z, Zhang Q. Intestinal colonization and acute immune response in commercial turkeys following inoculation with Campylobacter jejuni constructs encoding antibiotic-resistance markers. Veterinary Immunology and Immunopathology. 210: 6-14. PMID 30947981 DOI: 10.1016/J.Vetimm.2019.02.003  0.338
2019 Peck K, Stedtfeld R, RoseFigura J, Reed B, McUsic D, Irish J, Etchebarne B, Johnson T, Kurihara L, Makarov V. Abstract 1484: Microbial sequencing using a single-pool target enrichment of multiple variable regions of the 16S rRNA gene, the nuclear ribosomal internal transcribed spacer (ITS) region, and antimicrobial resistance genes Cancer Research. 79: 1484-1484. DOI: 10.1158/1538-7445.Am2019-1484  0.461
2018 Sylte MJ, Inbody MH, Johnson TA, Looft T, Line JE. Evaluation of different Campylobacter jejuni isolates to colonize the intestinal tract of commercial turkey poults and selective media for enumeration. Poultry Science. PMID 29514291 DOI: 10.3382/Ps/Pex384  0.312
2017 Etchebarne BE, Li Z, Stedtfeld RD, Nicholas MC, Williams MR, Johnson TA, Stedtfeld TM, Kostic T, Khalife WT, Tiedje JM, Hashsham SA, Hughes MJ. Evaluation of Nucleic Acid Isothermal Amplification Methods for Human Clinical Microbial Infection Detection. Frontiers in Microbiology. 8: 2211. PMID 29312154 DOI: 10.3389/Fmicb.2017.02211  0.456
2017 Johnson TA, Looft T, Severin AJ, Bayles DO, Nasko DJ, Wommack KE, Howe A, Allen HK. The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome. Mbio. 8. PMID 28790203 DOI: 10.1128/Mbio.00709-17  0.515
2016 Jia B, Raphenya AR, Alcock B, Waglechner N, Guo P, Tsang KK, Lago BA, Dave BM, Pereira S, Sharma AN, Doshi S, Courtot M, Lo R, Williams LE, Frye JG, ... ... Johnson TA, et al. CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database. Nucleic Acids Research. PMID 27789705 DOI: 10.1093/Nar/Gkw1004  0.425
2016 Chai B, Tsoi TV, Iwai S, Liu C, Fish JA, Gu C, Johnson TA, Zylstra G, Teppen BJ, Li H, Hashsham SA, Boyd SA, Cole JR, Tiedje JM. Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay. Plos One. 11: e0157008. PMID 27309357 DOI: 10.1371/Journal.Pone.0157008  0.495
2016 Johnson TA, Stedtfeld RD, Wang Q, Cole JR, Hashsham SA, Looft T, Zhu YG, Tiedje JM. Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture. Mbio. 7. PMID 27073098 DOI: 10.1128/Mbio.02214-15  0.571
2016 Muziasari WI, Pärnänen K, Johnson TA, Lyra C, Karkman A, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M. Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments. Fems Microbiology Ecology. PMID 26976842 DOI: 10.1093/Femsec/Fiw052  0.584
2016 Stedtfeld RD, Williams M, Fakher U, Johnson TA, Stedtfeld TM, Wang F, Khalife WT, Hughes M, Etchebarne B, Tiedje JM, Hashsham SA. Antimicrobial Resistance (AR) Dashboard Application for Mapping Environmental Occurrence and Resistant Pathogens. Fems Microbiology Ecology. PMID 26850162 DOI: 10.1093/Femsec/Fiw020  0.565
2016 Karkman A, Johnson TA, Lyra C, Stedtfeld RD, Tamminen M, Tiedje JM, Virta M. High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant. Fems Microbiology Ecology. PMID 26832203 DOI: 10.1093/Femsec/Fiw014  0.593
2013 Penton CR, Johnson TA, Quensen JF, Iwai S, Cole JR, Tiedje JM. Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter. Frontiers in Microbiology. 4: 279. PMID 24062736 DOI: 10.3389/Fmicb.2013.00279  0.648
2013 Zhu YG, Johnson TA, Su JQ, Qiao M, Guo GX, Stedtfeld RD, Hashsham SA, Tiedje JM. Diverse and abundant antibiotic resistance genes in Chinese swine farms. Proceedings of the National Academy of Sciences of the United States of America. 110: 3435-40. PMID 23401528 DOI: 10.1073/Pnas.1222743110  0.594
2012 Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham SA, Tiedje JM, Stanton TB. In-feed antibiotic effects on the swine intestinal microbiome. Proceedings of the National Academy of Sciences of the United States of America. 109: 1691-6. PMID 22307632 DOI: 10.1073/Pnas.1120238109  0.672
2011 Iwai S, Johnson TA, Chai B, Hashsham SA, Tiedje JM. Comparison of the specificities and efficacies of primers for aromatic dioxygenase gene analysis of environmental samples. Applied and Environmental Microbiology. 77: 3551-7. PMID 21498766 DOI: 10.1128/Aem.00331-11  0.526
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