Nathan Michael Springer - Publications

Affiliations: 
2000 University of Minnesota, Twin Cities, Minneapolis, MN 

94 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Crisp PA, Hammond R, Zhou P, Vaillancourt B, Lipzen AM, Daum C, Barry KW, de Leon N, Buell CR, Kaeppler SM, Meyers BC, Hirsch C, Springer NM. Variation and inheritance of small RNAs in maize inbreds and F1 hybrids. Plant Physiology. PMID 31575624 DOI: 10.1104/pp.19.00817  0.36
2019 Anderson SN, Stitzer MC, Zhou P, Ross-Ibarra J, Hirsch CD, Springer NM. Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize. G3 (Bethesda, Md.). PMID 31506319 DOI: 10.1534/g3.119.400431  0.36
2019 Noshay JM, Anderson SN, Zhou P, Ji L, Ricci W, Lu Z, Stitzer MC, Crisp PA, Hirsch CN, Zhang X, Schmitz RJ, Springer NM. Monitoring the interplay between transposable element families and DNA methylation in maize. Plos Genetics. 15: e1008291. PMID 31498837 DOI: 10.1371/journal.pgen.1008291  0.44
2019 Li Z, Coffey L, Garfin J, Miller ND, White MR, Spalding EP, Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Correction: Genotype-by-environment interactions affecting heterosis in maize. Plos One. 14: e0219528. PMID 31381609 DOI: 10.1371/journal.pone.0219528  0.36
2019 Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, O'Connor CH, Hirsch CD, Ross-Ibarra J, Hirsch CN, Springer NM. Transposable elements contribute to dynamic genome content in maize. The Plant Journal : For Cell and Molecular Biology. PMID 31381222 DOI: 10.1111/tpj.14489  0.36
2019 Enders TA, St Dennis S, Oakland J, Callen ST, Gehan MA, Miller ND, Spalding EP, Springer NM, Hirsch CD. Classifying cold-stress responses of inbred maize seedlings using RGB imaging. Plant Direct. 3: e00104. PMID 31245751 DOI: 10.1002/pld3.104  0.36
2018 Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MMS, Scanlon MJ, Yu J, Schnable PS, Timmermans MCP, ... Springer NM, et al. Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology. 19: 122. PMID 30134966 DOI: 10.1186/s13059-018-1508-z  0.64
2018 Han Z, Crisp PA, Stelpflug S, Kaeppler SM, Li Q, Springer NM. Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture. Genetics. PMID 29848487 DOI: 10.1534/genetics.118.300987  0.36
2018 Li Z, Coffey L, Garfin J, Miller ND, White MR, Spalding EP, de Leon N, Kaeppler SM, Schnable PS, Springer NM, Hirsch CN. Genotype-by-environment interactions affecting heterosis in maize. Plos One. 13: e0191321. PMID 29342221 DOI: 10.1371/journal.pone.0191321  0.36
2018 Li Q, Hermanson PJ, Springer NM. Detection of DNA Methylation by Whole-Genome Bisulfite Sequencing. Methods in Molecular Biology (Clifton, N.J.). 1676: 185-196. PMID 28986911 DOI: 10.1007/978-1-4939-7315-6_11  0.56
2017 Springer NM, Schmitz RJ. Exploiting induced and natural epigenetic variation for crop improvement. Nature Reviews. Genetics. PMID 28669983 DOI: 10.1038/nrg.2017.45  0.44
2016 Waters AJ, Makarevitch I, Noshay J, Burghardt LT, Hirsch CN, Hirsch CD, Springer NM. Natural variation for gene expression responses to abiotic stress in maize. The Plant Journal : For Cell and Molecular Biology. PMID 28188666 DOI: 10.1111/tpj.13414  0.56
2016 Hirsch C, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler ES, et al. Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize. The Plant Cell. PMID 27803309 DOI: 10.1105/tpc.16.00353  0.36
2016 Niederhuth CE, Bewick AJ, Ji L, Alabady MS, Kim KD, Li Q, Rohr NA, Rambani A, Burke JM, Udall JA, Egesi C, Schmutz J, Grimwood J, Jackson SA, Springer NM, et al. Widespread natural variation of DNA methylation within angiosperms. Genome Biology. 17: 194. PMID 27671052 DOI: 10.1186/s13059-016-1059-0  0.44
2016 Altpeter F, Springer NM, Bartley LE, Blechl A, Brutnell TP, Citovsky V, Conrad L, Gelvin SB, Jackson D, Kausch AP, Lemaux PG, Medford JI, Orozo-Cardenas M, Tricoli D, VanEck J, et al. Advancing Crop Transformation in the Era of Genome Editing. The Plant Cell. PMID 27335450 DOI: 10.1105/tpc.16.00196  0.64
2016 Hirsch CD, Springer NM. Transposable element influences on gene expression in plants. Biochimica Et Biophysica Acta. PMID 27235540 DOI: 10.1016/j.bbagrm.2016.05.010  0.36
2016 Springer NM, Li Q, Lisch D. Creating order from chaos: epigenome dynamics in plants with complex genomes. The Plant Cell. PMID 26869701 DOI: 10.1105/tpc.15.00911  0.64
2015 Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM. RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 26553984 DOI: 10.1073/pnas.1514680112  0.64
2015 Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM. Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress. Plos Genetics. 11: e1005566. PMID 26452261 DOI: 10.1371/journal.pgen.1005566  0.64
2015 Hirsch CD, Springer NM, Hirsch CN. Genomic limitations to RNA sequencing expression profiling. The Plant Journal : For Cell and Molecular Biology. 84: 491-503. PMID 26331235 DOI: 10.1111/tpj.13014  0.64
2015 Springer NM, McGinnis KM. Paramutation in evolution, population genetics and breeding. Seminars in Cell & Developmental Biology. PMID 26325077 DOI: 10.1016/j.semcdb.2015.08.010  0.64
2015 Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ. Reassess the t Test: Interact with All Your Data via ANOVA. The Plant Cell. 27: 2088-94. PMID 26220933 DOI: 10.1105/tpc.15.00238  0.64
2015 Eichten SR, Springer NM. Minimal evidence for consistent changes in maize DNA methylation patterns following environmental stress. Frontiers in Plant Science. 6: 308. PMID 25999972 DOI: 10.3389/fpls.2015.00308  0.64
2015 Li Q, Song J, West PT, Zynda G, Eichten SR, Vaughn MW, Springer NM. Examining the causes and consequences of context-specific differential DNA methylation in maize. Plant Physiology. PMID 25869653 DOI: 10.1104/pp.15.00052  0.64
2015 Li Q, Suzuki M, Wendt J, Patterson N, Eichten SR, Hermanson PJ, Green D, Jeddeloh J, Richmond T, Rosenbaum H, Burgess D, Springer NM, Greally JM. Post-conversion targeted capture of modified cytosines in mammalian and plant genomes. Nucleic Acids Research. 43: e81. PMID 25813045 DOI: 10.1093/nar/gkv244  0.64
2015 Makarevitch I, Waters AJ, West PT, Stitzer M, Hirsch CN, Ross-Ibarra J, Springer NM. Transposable elements contribute to activation of maize genes in response to abiotic stress. Plos Genetics. 11: e1004915. PMID 25569788 DOI: 10.1371/journal.pgen.1004915  0.64
2015 Schaefer RJ, Briskine R, Springer NM, Myers CL. Correction: Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser Plos One. 10. DOI: 10.1371/journal.pone.0120222  0.64
2014 Li Q, Eichten SR, Hermanson PJ, Zaunbrecher VM, Song J, Wendt J, Rosenbaum H, Madzima TF, Sloan AE, Huang J, Burgess DL, Richmond TA, McGinnis KM, Meeley RB, Danilevskaya ON, ... ... Springer NM, et al. Genetic perturbation of the maize methylome. The Plant Cell. 26: 4602-16. PMID 25527708 DOI: 10.1105/tpc.114.133140  0.64
2014 Belova T, Grønvold L, Kumar A, Kianian S, He X, Lillemo M, Springer NM, Lien S, Olsen OA, Sandve SR. Utilization of deletion bins to anchor and order sequences along the wheat 7B chromosome. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 127: 2029-40. PMID 25134516 DOI: 10.1007/s00122-014-2358-z  0.64
2014 West PT, Li Q, Ji L, Eichten SR, Song J, Vaughn MW, Schmitz RJ, Springer NM. Genomic distribution of H3K9me2 and DNA methylation in a maize genome. Plos One. 9: e105267. PMID 25122127 DOI: 10.1371/journal.pone.0105267  0.64
2014 Hirsch CN, Flint-Garcia SA, Beissinger TM, Eichten SR, Deshpande S, Barry K, McMullen MD, Holland JB, Buckler ES, Springer N, Buell CR, de Leon N, Kaeppler SM. Insights into the effects of long-term artificial selection on seed size in maize. Genetics. 198: 409-21. PMID 25037958 DOI: 10.1534/genetics.114.167155  0.64
2014 Stelpflug SC, Eichten SR, Hermanson PJ, Springer NM, Kaeppler SM. Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize. Genetics. 198: 209-18. PMID 25023398 DOI: 10.1534/genetics.114.165480  0.64
2014 Penning BW, Sykes RW, Babcock NC, Dugard CK, Held MA, Klimek JF, Shreve JT, Fowler M, Ziebell A, Davis MF, Decker SR, Turner GB, Mosier NS, Springer NM, Thimmapuram J, et al. Genetic Determinants for Enzymatic Digestion of Lignocellulosic Biomass Are Independent of Those for Lignin Abundance in a Maize Recombinant Inbred Population. Plant Physiology. 165: 1475-1487. PMID 24972714 DOI: 10.1104/pp.114.242446  0.64
2014 Schaefer RJ, Briskine R, Springer NM, Myers CL. Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser. Plos One. 9: e99193. PMID 24922320 DOI: 10.1371/journal.pone.0099193  0.64
2014 Eichten SR, Schmitz RJ, Springer NM. Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation. Plant Physiology. 165: 933-947. PMID 24872382 DOI: 10.1104/pp.113.234211  0.64
2014 Li L, Eichten SR, Shimizu R, Petsch K, Yeh CT, Wu W, Chettoor AM, Givan SA, Cole RA, Fowler JE, Evans MM, Scanlon MJ, Yu J, Schnable PS, Timmermans MC, ... Springer NM, et al. Genome-wide discovery and characterization of maize long non-coding RNAs. Genome Biology. 15: R40. PMID 24576388 DOI: 10.1186/gb-2014-15-2-r40  0.64
2014 Li Q, Eichten SR, Hermanson PJ, Springer NM. Inheritance patterns and stability of DNA methylation variation in maize near-isogenic lines. Genetics. 196: 667-76. PMID 24361940 DOI: 10.1534/genetics.113.158980  0.64
2014 Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, De Leon N, Kaeppler SM. Correction: Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays (PLoS ONE) Plos One. 9. DOI: 10.1371/annotation/0444d495-9231-4097-abe0-4750b9045971  0.64
2013 Waters AJ, Bilinski P, Eichten SR, Vaughn MW, Ross-Ibarra J, Gehring M, Springer NM. Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species. Proceedings of the National Academy of Sciences of the United States of America. 110: 19639-44. PMID 24218619 DOI: 10.1073/pnas.1309182110  0.64
2013 Eichten SR, Briskine R, Song J, Li Q, Swanson-Wagner R, Hermanson PJ, Waters AJ, Starr E, West PT, Tiffin P, Myers CL, Vaughn MW, Springer NM. Epigenetic and genetic influences on DNA methylation variation in maize populations. The Plant Cell. 25: 2783-97. PMID 23922207 DOI: 10.1105/tpc.113.114793  0.64
2013 Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, et al. Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome. Genome Biology. 14: R58. PMID 23758725 DOI: 10.1186/gb-2013-14-6-r58  0.64
2013 Sekhon RS, Briskine R, Hirsch CN, Myers CL, Springer NM, Buell CR, de Leon N, Kaeppler SM. Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays. Plos One. 8: e61005. PMID 23637782 DOI: 10.1371/journal.pone.0061005  0.64
2013 Makarevitch I, Eichten SR, Briskine R, Waters AJ, Danilevskaya ON, Meeley RB, Myers CL, Vaughn MW, Springer NM. Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27. The Plant Cell. 25: 780-93. PMID 23463775 DOI: 10.1105/tpc.112.106427  0.64
2013 Schnable PS, Springer NM. Progress toward understanding heterosis in crop plants. Annual Review of Plant Biology. 64: 71-88. PMID 23394499 DOI: 10.1146/annurev-arplant-042110-103827  0.64
2013 Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ. Mendelian and non-Mendelian regulation of gene expression in maize. Plos Genetics. 9: e1003202. PMID 23341782 DOI: 10.1371/journal.pgen.1003202  0.64
2013 Springer NM. Epigenetics and crop improvement. Trends in Genetics : Tig. 29: 241-7. PMID 23128009 DOI: 10.1016/j.tig.2012.10.009  0.64
2013 Eichten SR, Vaughn MW, Hermanson PJ, Springer NM. Variation in DNA methylation patterns is more common among maize inbreds than among tissues Plant Genome. 6. DOI: 10.3835/plantgenome2012.06.0009  0.64
2012 Eichten SR, Ellis NA, Makarevitch I, Yeh CT, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW, Dawe RK, Springer NM. Spreading of heterochromatin is limited to specific families of maize retrotransposons. Plos Genetics. 8: e1003127. PMID 23271981 DOI: 10.1371/journal.pgen.1003127  0.64
2012 Swanson-Wagner R, Briskine R, Schaefer R, Hufford MB, Ross-Ibarra J, Myers CL, Tiffin P, Springer NM. Reshaping of the maize transcriptome by domestication. Proceedings of the National Academy of Sciences of the United States of America. 109: 11878-83. PMID 22753482 DOI: 10.1073/pnas.1201961109  0.64
2012 Liu S, Ying K, Yeh CT, Yang J, Swanson-Wagner R, Wu W, Richmond T, Gerhardt DJ, Lai J, Springer N, Nettleton D, Jeddeloh JA, Schnable PS. Changes in genome content generated via segregation of non-allelic homologs. The Plant Journal : For Cell and Molecular Biology. 72: 390-9. PMID 22731681 DOI: 10.1111/j.1365-313X.2012.05087.x  0.64
2012 Hufford MB, Xu X, van Heerwaarden J, Pyhäjärvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, et al. Comparative population genomics of maize domestication and improvement. Nature Genetics. 44: 808-11. PMID 22660546 DOI: 10.1038/ng.2309  0.64
2012 Makarevitch I, Thompson A, Muehlbauer GJ, Springer NM. Brd1 gene in maize encodes a brassinosteroid C-6 oxidase. Plos One. 7: e30798. PMID 22292043 DOI: 10.1371/journal.pone.0030798  0.64
2011 Waters AJ, Makarevitch I, Eichten SR, Swanson-Wagner RA, Yeh CT, Xu W, Schnable PS, Vaughn MW, Gehring M, Springer NM. Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm. The Plant Cell. 23: 4221-33. PMID 22198147 DOI: 10.1105/tpc.111.092668  0.64
2011 Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM. Heritable epigenetic variation among maize inbreds. Plos Genetics. 7: e1002372. PMID 22125494 DOI: 10.1371/journal.pgen.1002372  0.64
2011 Eichten SR, Foerster JM, de Leon N, Kai Y, Yeh CT, Liu S, Jeddeloh JA, Schnable PS, Kaeppler SM, Springer NM. B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize. Plant Physiology. 156: 1679-90. PMID 21705654 DOI: 10.1104/pp.111.174748  0.64
2011 Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, Stupar RM. The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiology. 155: 645-55. PMID 21115807 DOI: 10.1104/pp.110.166736  0.64
2010 Fu Y, Springer NM, Ying K, Yeh CT, Iniguez AL, Richmond T, Wu W, Barbazuk B, Nettleton D, Jeddeloh J, Schnable PS. High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes. Plos One. 5: e14178. PMID 21152036 DOI: 10.1371/journal.pone.0014178  0.64
2010 Springer NM. Isolation of plant DNA for PCR and genotyping using organic extraction and CTAB. Cold Spring Harbor Protocols. 2010: pdb.prot5515. PMID 21041388 DOI: 10.1101/pdb.prot5515  0.64
2010 Swanson-Wagner RA, Eichten SR, Kumari S, Tiffin P, Stein JC, Ware D, Springer NM. Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Research. 20: 1689-99. PMID 21036921 DOI: 10.1101/gr.109165.110  0.64
2010 Lai J, Li R, Xu X, Jin W, Xu M, Zhao H, Xiang Z, Song W, Ying K, Zhang M, Jiao Y, Ni P, Zhang J, Li D, Guo X, ... ... Springer NM, et al. Genome-wide patterns of genetic variation among elite maize inbred lines. Nature Genetics. 42: 1027-30. PMID 20972441 DOI: 10.1038/ng.684  0.64
2010 Springer N. Shaping a better rice plant Nature Genetics. 42: 475-476. PMID 20502488 DOI: 10.1038/ng0610-475  0.64
2010 Douglas RN, Wiley D, Sarkar A, Springer N, Timmermans MCP, Scanlon MJ. Ragged seedling2 encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves Plant Cell. 22: 1441-1451. PMID 20453116 DOI: 10.1105/tpc.109.071613  0.64
2010 Springer NM, Jackson SA. Realizing the potential of genomics for crop improvement. Briefings in Functional Genomics. 9: 93-4. PMID 20332093 DOI: 10.1093/bfgp/elq006  0.64
2010 Fu Y, Springer NM, Gerhardt DJ, Ying K, Yeh CT, Wu W, Swanson-Wagner R, D'Ascenzo M, Millard T, Freeberg L, Aoyama N, Kitzman J, Burgess D, Richmond T, Albert TJ, et al. Repeat subtraction-mediated sequence capture from a complex genome. The Plant Journal : For Cell and Molecular Biology. 62: 898-909. PMID 20230488 DOI: 10.1111/j.1365-313X.2010.04196.x  0.64
2010 Liu S, Chen HD, Makarevitch I, Shirmer R, Emrich SJ, Dietrich CR, Barbazuk WB, Springer NM, Schnable PS. High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics. 184: 19-26. PMID 19884313 DOI: 10.1534/genetics.109.107557  0.64
2009 Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS. Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. Plos Genetics. 5: e1000734. PMID 19956538 DOI: 10.1371/journal.pgen.1000734  0.64
2009 Flint-Garcia SA, Buckler ES, Tiffin P, Ersoz E, Springer NM. Heterosis is prevalent for multiple traits in diverse maize germplasm. Plos One. 4: e7433. PMID 19823591 DOI: 10.1371/journal.pone.0007433  0.64
2009 Springer NM. Small RNAs: how seeds remember to obey their mother. Current Biology : Cb. 19: R649-51. PMID 19674547 DOI: 10.1016/j.cub.2009.06.049  0.64
2009 Johnson KJ, Springer NM, Bielinsky AK, Largaespada DA, Ross JA. Developmental origins of cancer. Cancer Research. 69: 6375-7. PMID 19654290 DOI: 10.1158/0008-5472.CAN-09-1391  0.64
2009 Chaudhary B, Flagel L, Stupar RM, Udall JA, Verma N, Springer NM, Wendel JF. Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium). Genetics. 182: 503-17. PMID 19363125 DOI: 10.1534/genetics.109.102608  0.64
2009 Haun WJ, Danilevskaya ON, Meeley RB, Springer NM. Disruption of imprinting by mutator transposon insertions in the 5' proximal regions of the Zea mays Mez1 locus. Genetics. 181: 1229-37. PMID 19204379 DOI: 10.1534/genetics.108.093666  0.64
2009 Gray J, Bevan M, Brutnell T, Buell CR, Cone K, Hake S, Jackson D, Kellogg E, Lawrence C, McCouch S, Mockler T, Moose S, Paterson A, Peterson T, Rokshar D, ... ... Springer N, et al. A recommendation for naming transcription factor proteins in the grasses. Plant Physiology. 149: 4-6. PMID 19126689 DOI: 10.1104/pp.108.128504  0.64
2009 Springer NM, Kaeppler SM. Chapter 3 Epigenetics. The Second Genetic Code Advances in Agronomy. 100: 59-80. DOI: 10.1016/S0065-2113(08)00603-2  0.64
2009 Hollick JB, Springer N. Epigenetic phenomena and epigenomics in maize Epigenomics. 119-147. DOI: 10.1007/978-1-4020-9187-2_8  0.64
2009 Springer NM, Gutierrez-Marcos JF. Imprinting in maize Handbook of Maize: Genetics and Genomics. 429-440. DOI: 10.1007/978-0-387-77863-1_21  0.64
2009 Springer NM, Eichten S, Smith A, Papa CM, Steinway S, Kaeppler SM. Characterization of a novel maize retrotransposon family sprite that shows high levels of variability among maize inbred lines Maydica. 54: 417-428.  0.64
2008 Haun WJ, Springer NM. Maternal and paternal alleles exhibit differential histone methylation and acetylation at maize imprinted genes. The Plant Journal : For Cell and Molecular Biology. 56: 903-12. PMID 18694457 DOI: 10.1111/j.1365-313X.2008.03649.x  0.64
2008 Stupar RM, Gardiner JM, Oldre AG, Haun WJ, Chandler VL, Springer NM. Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. Bmc Plant Biology. 8: 33. PMID 18402703 DOI: 10.1186/1471-2229-8-33  0.64
2008 Makarevitch I, Phillips RL, Springer NM. Profiling expression changes caused by a segmental aneuploid in maize. Bmc Genomics. 9: 7. PMID 18186930 DOI: 10.1186/1471-2164-9-7  0.64
2007 Stupar RM, Hermanson PJ, Springer NM. Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm. Plant Physiology. 145: 411-25. PMID 17766400 DOI: 10.1104/pp.107.101428  0.64
2007 Springer NM, Stupar RM. Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize. The Plant Cell. 19: 2391-402. PMID 17693532 DOI: 10.1105/tpc.107.052258  0.64
2007 Makarevitch I, Stupar RM, Iniguez AL, Haun WJ, Barbazuk WB, Kaeppler SM, Springer NM. Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2. Genetics. 177: 749-60. PMID 17660570 DOI: 10.1534/genetics.107.072702  0.64
2007 McGinnis K, Murphy N, Carlson AR, Akula A, Akula C, Basinger H, Carlson M, Hermanson P, Kovacevic N, McGill MA, Seshadri V, Yoyokie J, Cone K, Kaeppler HF, Kaeppler SM, ... Springer NM, et al. Assessing the efficiency of RNA interference for maize functional genomics. Plant Physiology. 143: 1441-51. PMID 17307899 DOI: 10.1104/pp.106.094334  0.64
2007 Springer NM, Stupar RM. Allelic variation and heterosis in maize: how do two halves make more than a whole? Genome Research. 17: 264-75. PMID 17255553 DOI: 10.1101/gr.5347007  0.64
2007 Haun WJ, Laoueillé-Duprat S, O'connell MJ, Spillane C, Grossniklaus U, Phillips AR, Kaeppler SM, Springer NM. Genomic imprinting, methylation and molecular evolution of maize Enhancer of zeste (Mez) homologs. The Plant Journal : For Cell and Molecular Biology. 49: 325-37. PMID 17181776 DOI: 10.1111/j.1365-313X.2006.02965.x  0.64
2006 Stupar RM, Springer NM. Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics. 173: 2199-210. PMID 16702414 DOI: 10.1534/genetics.106.060699  0.64
2005 Springer NM, Kaeppler SM. Evolutionary divergence of monocot and dicot methyl-CpG-binding domain proteins. Plant Physiology. 138: 92-104. PMID 15888682 DOI: 10.1104/pp.105.060566  0.64
2005 McGinnis K, Chandler V, Cone K, Kaeppler H, Kaeppler S, Kerschen A, Pikaard C, Richards E, Sidorenko L, Smith T, Springer N, Wulan T. Transgene-induced RNA interference as a tool for plant functional genomics. Methods in Enzymology. 392: 1-24. PMID 15644172 DOI: 10.1016/S0076-6879(04)92001-0  0.64
2004 Springer NM, Xu X, Barbazuk WB. Utility of different gene enrichment approaches toward identifying and sequencing the maize gene space. Plant Physiology. 136: 3023-33. PMID 15299128 DOI: 10.1104/pp.104.043323  0.64
2004 Till BJ, Reynolds SH, Weil C, Springer N, Burtner C, Young K, Bowers E, Codomo CA, Enns LC, Odden AR, Greene EA, Comai L, Henikoff S. Discovery of induced point mutations in maize genes by TILLING. Bmc Plant Biology. 4: 12. PMID 15282033 DOI: 10.1186/1471-2229-4-12  0.64
2003 Springer NM, Napoli CA, Selinger DA, Pandey R, Cone KC, Chandler VL, Kaeppler HF, Kaeppler SM. Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiology. 132: 907-25. PMID 12805620 DOI: 10.1104/pp.102.013722  0.64
2002 Springer NM, Danilevskaya ON, Hermon P, Helentjaris TG, Phillips RL, Kaeppler HF, Kaeppler SM. Sequence relationships, conserved domains, and expression patterns for maize homologs of the polycomb group genes E(z), esc, and E(Pc). Plant Physiology. 128: 1332-45. PMID 11950982 DOI: 10.1104/pp.010742  0.64
2001 Papa CM, Springer NM, Muszynski MG, Meeley R, Kaeppler SM. Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation. The Plant Cell. 13: 1919-28. PMID 11487702 DOI: 10.1105/tpc.13.8.1919  0.64
2000 Cao X, Springer NM, Muszynski MG, Phillips RL, Kaeppler S, Jacobsen SE. Conserved plant genes with similarity to mammalian de novo DNA methyltransferases. Proceedings of the National Academy of Sciences of the United States of America. 97: 4979-84. PMID 10781108 DOI: 10.1073/pnas.97.9.4979  0.64
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