Noah Aubrey Rosenberg - Publications

Affiliations: 
2001 Stanford University, Palo Alto, CA 

162 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kim J, Edge MD, Goldberg A, Rosenberg NA. Skin deep: The decoupling of genetic admixture levels from phenotypes that differed between source populations. American Journal of Physical Anthropology. PMID 33772750 DOI: 10.1002/ajpa.24261  1
2021 Greenbaum G, Feldman MW, Rosenberg NA, Kim J. Designing gene drives to limit spillover to non-target populations. Plos Genetics. 17: e1009278. PMID 33630838 DOI: 10.1371/journal.pgen.1009278  0.8
2020 Harpak A, Garud N, Rosenberg NA, Petrov DA, Combs M, Pennings PS, Munshi-South J. Genetic Adaptation in New York City Rats. Genome Biology and Evolution. PMID 33211096 DOI: 10.1093/gbe/evaa247  0.56
2020 Kim J, Rosenberg NA, Palacios JA. Distance metrics for ranked evolutionary trees. Proceedings of the National Academy of Sciences of the United States of America. PMID 33139566 DOI: 10.1073/pnas.1922851117  0.36
2020 Fortier AL, Kim J, Rosenberg NA. Human-Genetic Ancestry Inference and False Positives in Forensic Familial Searching. G3 (Bethesda, Md.). PMID 32586848 DOI: 10.1534/G3.120.401473  0.36
2020 Goldberg A, Rastogi A, Rosenberg NA. Assortative mating by population of origin in a mechanistic model of admixture. Theoretical Population Biology. PMID 32275920 DOI: 10.1016/J.Tpb.2020.02.004  1
2020 Kang JTL, Rosenberg NA. Mathematical Properties of Linkage Disequilibrium Statistics Defined by Normalization of the Coefficient D = pAB - pApB. Human Heredity. 1-17. PMID 32045910 DOI: 10.1159/000504171  0.44
2020 Kopelman NM, Stone L, Hernandez DG, Gefel D, Singleton AB, Heyer E, Feldman MW, Hillel J, Rosenberg NA. High-resolution inference of genetic relationships among Jewish populations. European Journal of Human Genetics : Ejhg. PMID 31919450 DOI: 10.1038/S41431-019-0542-Y  0.8
2019 Greenbaum G, Rubin A, Templeton AR, Rosenberg NA. Network-based hierarchical population structure analysis for large genomic datasets. Genome Research. PMID 31694865 DOI: 10.1101/Gr.250092.119  0.4
2019 Greenbaum G, Getz WM, Rosenberg NA, Feldman MW, Hovers E, Kolodny O. Disease transmission and introgression can explain the long-lasting contact zone of modern humans and Neanderthals. Nature Communications. 10: 5003. PMID 31676766 DOI: 10.1038/S41467-019-12862-7  0.8
2019 Alcala N, Goldberg A, Ramakrishnan U, Rosenberg NA. Coalescent theory of migration network motifs. Molecular Biology and Evolution. PMID 31165149 DOI: 10.1093/Molbev/Msz136  1
2019 Rosenberg NA, Edge MD, Pritchard JK, Feldman MW. Interpreting polygenic scores, polygenic adaptation, and human phenotypic differences. Evolution, Medicine, and Public Health. 2019: 26-34. PMID 30838127 DOI: 10.1093/Emph/Eoy036  0.8
2018 Altenberg L, Creanza N, Fogarty L, Hadany L, Kolodny O, Laland KN, Lehmann L, Otto SP, Rosenberg NA, Van Cleve J, Wakeley J. Some topics in theoretical population genetics: Editorial commentaries on a selection of Marc Feldman's TPB papers. Theoretical Population Biology. PMID 30593784 DOI: 10.1016/J.Tpb.2018.10.003  0.92
2018 Alcala N, Rosenberg NA. G' , Jost's D, and F are similarly constrained by allele frequencies: a mathematical, simulation, and empirical study. Molecular Ecology. PMID 30589985 DOI: 10.1111/Mec.15000  0.36
2018 Kim J, Edge MD, Algee-Hewitt BFB, Li JZ, Rosenberg NA. Statistical Detection of Relatives Typed with Disjoint Forensic and Biomedical Loci. Cell. PMID 30318150 DOI: 10.1016/J.Cell.2018.09.008  0.56
2018 Alcala N, Launer AE, Westphal MF, Seymour R, Cole EM, Rosenberg NA. Use of stochastic patch-occupancy models in the California red-legged frog for Bayesian inference regarding past events and future persistence. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 30019427 DOI: 10.1111/Cobi.13192  0.36
2018 Pemberton TJ, Verdu P, Becker NS, Willer CJ, Hewlett BS, Le Bomin S, Froment A, Rosenberg NA, Heyer E. A genome scan for genes underlying adult body size differences between Central African hunter-gatherers and farmers. Human Genetics. PMID 30008065 DOI: 10.1007/S00439-018-1902-3  0.56
2018 Kim J, Disanto F, Kopelman NM, Rosenberg NA. Mathematical and Simulation-Based Analysis of the Behavior of Admixed Taxa in the Neighbor-Joining Algorithm. Bulletin of Mathematical Biology. PMID 29876842 DOI: 10.1007/S11538-018-0444-0  0.36
2018 Aw AJ, Rosenberg NA. Bounding measures of genetic similarity and diversity using majorization. Journal of Mathematical Biology. PMID 29569105 DOI: 10.1007/S00285-018-1226-X  0.44
2017 Kang JTL, Goldberg A, Edge MD, Behar DM, Rosenberg NA. Consanguinity Rates Predict Long Runs of Homozygosity in Jewish Populations. Human Heredity. 82: 87-102. PMID 28910803 DOI: 10.1159/000478897  1
2017 Verdu P, Jewett EM, Pemberton TJ, Rosenberg NA, Baptista M. Parallel Trajectories of Genetic and Linguistic Admixture in a Genetically Admixed Creole Population. Current Biology : Cb. PMID 28803872 DOI: 10.1016/J.Cub.2017.07.002  0.56
2017 Edge MD, Algee-Hewitt BFB, Pemberton TJ, Li JZ, Rosenberg NA. Linkage disequilibrium matches forensic genetic records to disjoint genomic marker sets. Proceedings of the National Academy of Sciences of the United States of America. PMID 28507140 DOI: 10.1073/Pnas.1619944114  0.56
2017 Alcala N, Rosenberg NA. Mathematical Constraints on FST: Biallelic Markers in Arbitrarily Many Populations. Genetics. PMID 28476869 DOI: 10.1534/Genetics.116.199141  0.36
2017 Goldberg A, Günther T, Rosenberg NA, Jakobsson M. Reply to Lazaridis and Reich: Robust model-based inference of male-biased admixture during Bronze Age migration from the Pontic-Caspian Steppe. Proceedings of the National Academy of Sciences of the United States of America. PMID 28476765 DOI: 10.1073/Pnas.1704442114  1
2017 Goldberg A, Günther T, Rosenberg NA, Jakobsson M. Ancient X chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations. Proceedings of the National Academy of Sciences of the United States of America. PMID 28223527 DOI: 10.1073/Pnas.1616392114  1
2016 Mehta RS, Bryant D, Rosenberg NA. The probability of monophyly of a sample of gene lineages on a species tree. Proceedings of the National Academy of Sciences of the United States of America. PMID 27432988 DOI: 10.1073/Pnas.1601074113  1
2016 DeGiorgio M, Rosenberg NA. Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure. Theoretical Population Biology. PMID 27086043 DOI: 10.1016/J.Tpb.2016.02.002  1
2016 Algee-Hewitt BF, Edge MD, Kim J, Li JZ, Rosenberg NA. Individual Identifiability Predicts Population Identifiability in Forensic Microsatellite Markers. Current Biology : Cb. PMID 26996508 DOI: 10.1016/J.Cub.2016.01.065  1
2016 Rosenberg NA. Admixture Models and the Breeding Systems of H. S. Jennings: A GENETICS Connection. Genetics. 202: 9-13. PMID 26733663 DOI: 10.1534/Genetics.115.181057  1
2015 Edge MD, Rosenberg NA. A General Model of the Relationship between the Apportionment of Human Genetic Diversity and the Apportionment of Human Phenotypic Diversity. Human Biology. 87: 313-337. PMID 27737590 DOI: 10.13110/Humanbiology.87.4.0313  0.56
2015 Ronen R, Tesler G, Akbari A, Zakov S, Rosenberg NA, Bafna V. Predicting Carriers of Ongoing Selective Sweeps without Knowledge of the Favored Allele. Plos Genetics. 11: e1005527. PMID 26402243 DOI: 10.1371/Journal.Pgen.1005527  1
2015 Rosenberg NA, Kang JT. Genetic Diversity and Societally Important Disparities. Genetics. 201: 1-12. PMID 26354973 DOI: 10.1534/Genetics.115.176750  1
2015 Kang JT, Zhang P, Zöllner S, Rosenberg NA. Choosing Subsamples for Sequencing Studies by Minimizing the Average Distance to the Closest Leaf. Genetics. 201: 499-511. PMID 26307072 DOI: 10.1534/Genetics.115.176909  0.56
2015 Goldberg A, Rosenberg NA. Beyond 2/3 and 1/3: The Complex Signatures of Sex-Biased Admixture on the X Chromosome. Genetics. 201: 263-79. PMID 26209245 DOI: 10.1534/Genetics.115.178509  1
2015 Lehmann L, Rosenberg NA. Hamilton's rule: Game theory meets coalescent theory. Theoretical Population Biology. PMID 25980950 DOI: 10.1016/J.Tpb.2015.05.001  1
2015 Disanto F, Rosenberg NA. Coalescent Histories for Lodgepole Species Trees. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 25973633 DOI: 10.1089/Cmb.2015.0015  1
2015 Garud NR, Rosenberg NA. Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps. Theoretical Population Biology. 102: 94-101. PMID 25891325 DOI: 10.1016/J.Tpb.2015.04.001  1
2015 Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I. Clumpak: a program for identifying clustering modes and packaging population structure inferences across K. Molecular Ecology Resources. PMID 25684545 DOI: 10.1111/1755-0998.12387  0.56
2015 Edge MD, Rosenberg NA. Implications of the apportionment of human genetic diversity for the apportionment of human phenotypic diversity. Studies in History and Philosophy of Biological and Biomedical Sciences. PMID 25677859 DOI: 10.1016/J.Shpsc.2014.12.005  0.56
2015 Rosenberg NA. Theory in population biology, or biologically inspired mathematics? Theoretical Population Biology. 102: 1-2. PMID 25625316 DOI: 10.1016/J.Tpb.2015.01.002  1
2015 Creanza N, Ruhlen M, Pemberton TJ, Rosenberg NA, Feldman MW, Ramachandran S. A comparison of worldwide phonemic and genetic variation in human populations. Proceedings of the National Academy of Sciences of the United States of America. 112: 1265-72. PMID 25605893 DOI: 10.1073/Pnas.1424033112  0.56
2015 Buzbas EO, Rosenberg NA. AABC: approximate approximate Bayesian computation for inference in population-genetic models. Theoretical Population Biology. 99: 31-42. PMID 25261426 DOI: 10.1016/J.Tpb.2014.09.002  1
2015 Ronen R, Tesler G, Akbari A, Zakov S, Rosenberg NA, Bafna V. Haplotype Allele Frequency (HAF) score: Predicting carriers of ongoing selective sweeps without knowledge of the adaptive allele Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9029: 276-280. DOI: 10.1007/978-3-319-16706-0_28  0.56
2014 Goldberg A, Verdu P, Rosenberg NA. Autosomal admixture levels are informative about sex bias in admixed populations. Genetics. 198: 1209-29. PMID 25194159 DOI: 10.1534/Genetics.114.166793  0.56
2014 Edge MD, Rosenberg NA. Upper bounds on FST in terms of the frequency of the most frequent allele and total homozygosity: the case of a specified number of alleles. Theoretical Population Biology. 97: 20-34. PMID 25132646 DOI: 10.1016/J.Tpb.2014.08.001  0.56
2014 Verdu P, Pemberton TJ, Laurent R, Kemp BM, Gonzalez-Oliver A, Gorodezky C, Hughes CE, Shattuck MR, Petzelt B, Mitchell J, Harry H, William T, Worl R, Cybulski JS, Rosenberg NA, et al. Patterns of admixture and population structure in native populations of Northwest North America. Plos Genetics. 10: e1004530. PMID 25122539 DOI: 10.1371/Journal.Pgen.1004530  1
2014 Pemberton TJ, Rosenberg NA. Population-genetic influences on genomic estimates of the inbreeding coefficient: a global perspective. Human Heredity. 77: 37-48. PMID 25060268 DOI: 10.1159/000362878  0.56
2014 DeGiorgio M, Syring J, Eckert AJ, Liston A, Cronn R, Neale DB, Rosenberg NA. An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines. Bmc Evolutionary Biology. 14: 67. PMID 24678701 DOI: 10.1186/1471-2148-14-67  1
2014 Jewett EM, Rosenberg NA. Theory and applications of a deterministic approximation to the coalescent model. Theoretical Population Biology. 93: 14-29. PMID 24412419 DOI: 10.1016/J.Tpb.2013.12.007  1
2014 Rosenberg NA. Core elements of a TPB paper. Theoretical Population Biology. 92: 118-9. PMID 24309494 DOI: 10.1016/J.Tpb.2013.11.003  1
2014 Disanto F, Rosenberg NA. On the number of ranked species trees producing anomalous ranked gene trees Ieee/Acm Transactions On Computational Biology and Bioinformatics. 11: 1229-1238. DOI: 10.1109/TCBB.2014.2343977  1
2014 Than CV, Rosenberg NA. Mean deep coalescence cost under exchangeable probability distributions Discrete Applied Mathematics. 174: 11-26. DOI: 10.1016/J.Dam.2014.02.010  1
2013 Behar DM, Metspalu M, Baran Y, Kopelman NM, Yunusbayev B, Gladstein A, Tzur S, Sahakyan H, Bahmanimehr A, Yepiskoposyan L, Tambets K, Khusnutdinova EK, Kushniarevich A, Balanovsky O, Balanovsky E, ... ... Rosenberg NA, et al. No evidence from genome-wide data of a Khazar origin for the Ashkenazi Jews. Human Biology. 85: 859-900. PMID 25079123 DOI: 10.3378/027.085.0604  1
2013 Oefner PJ, Hölzi G, Shen P, Shpirer I, Gefel D, Lavi T, Woolf E, Cohen J, Cinnioglu C, Underhill PA, Rosenberg NA, Hochrein J, Granka JM, Hillel J, Feldman MW. Genetics and the history of the Samaritans: Y-chromosomal microsatellites and genetic affinity between Samaritans and Cohanim. Human Biology. 85: 825-58. PMID 25079122 DOI: 10.3378/027.085.0601  0.56
2013 Rosenberg NA, Weitzman SP. From generation to generation: the genetics of Jewish populations. Introduction. Human Biology. 85: 817-24. PMID 25079121 DOI: 10.3378/027.085.0603  1
2013 Rosenberg NA. Coalescent histories for caterpillar-like families. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 1253-62. PMID 24524157 DOI: 10.1109/Tcbb.2013.123  1
2013 Edge MD, Gorroochurn P, Rosenberg NA. Windfalls and pitfalls: Applications of population genetics to the search for disease genes. Evolution, Medicine, and Public Health. 2013: 254-72. PMID 24481204 DOI: 10.1093/Emph/Eot021  0.56
2013 Rosenberg NA. Discordance of species trees with their most likely gene trees: a unifying principle. Molecular Biology and Evolution. 30: 2709-13. PMID 24030555 DOI: 10.1093/Molbev/Mst160  1
2013 Rosenberg NA, Pemberton TJ, Li JZ, Belmont JW. Runs of homozygosity and parental relatedness. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 15: 753-4. PMID 24008258 DOI: 10.1038/Gim.2013.108  1
2013 Zhang P, Zhan X, Rosenberg NA, Zöllner S. Genotype imputation reference panel selection using maximal phylogenetic diversity. Genetics. 195: 319-30. PMID 23934887 DOI: 10.1534/Genetics.113.154591  0.56
2013 Szpiech ZA, Xu J, Pemberton TJ, Peng W, Zöllner S, Rosenberg NA, Li JZ. Long runs of homozygosity are enriched for deleterious variation. American Journal of Human Genetics. 93: 90-102. PMID 23746547 DOI: 10.1016/J.Ajhg.2013.05.003  0.56
2013 Than CV, Rosenberg NA. Mathematical properties of the deep coalescence cost. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 10: 61-72. PMID 23702544 DOI: 10.1109/Tcbb.2012.133  1
2013 Pemberton TJ, DeGiorgio M, Rosenberg NA. Population structure in a comprehensive genomic data set on human microsatellite variation. G3 (Bethesda, Md.). 3: 891-907. PMID 23550135 DOI: 10.1534/G3.113.005728  0.56
2013 Kopelman NM, Stone L, Gascuel O, Rosenberg NA. The behavior of admixed populations in neighbor-joining inference of population trees. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 273-84. PMID 23424132  1
2013 Jakobsson M, Edge MD, Rosenberg NA. The relationship between F(ST) and the frequency of the most frequent allele. Genetics. 193: 515-28. PMID 23172852 DOI: 10.1534/Genetics.112.144758  0.56
2013 Huang L, Buzbas EO, Rosenberg NA. Genotype imputation in a coalescent model with infinitely-many-sites mutation. Theoretical Population Biology. 87: 62-74. PMID 23079542 DOI: 10.1016/J.Tpb.2012.09.006  1
2013 DeGiorgio M, Rosenberg NA. Geographic sampling scheme as a determinant of the major axis of genetic variation in principal components analysis. Molecular Biology and Evolution. 30: 480-8. PMID 23051843 DOI: 10.1093/Molbev/Mss233  0.56
2013 Rosenberg NA. Editorial Theoretical Population Biology. 83: A2-A3. DOI: 10.1016/j.tpb.2012.10.009  1
2012 Wang C, Zöllner S, Rosenberg NA. A quantitative comparison of the similarity between genes and geography in worldwide human populations. Plos Genetics. 8: e1002886. PMID 22927824 DOI: 10.1371/Journal.Pgen.1002886  0.56
2012 Pemberton TJ, Absher D, Feldman MW, Myers RM, Rosenberg NA, Li JZ. Genomic patterns of homozygosity in worldwide human populations. American Journal of Human Genetics. 91: 275-92. PMID 22883143 DOI: 10.1016/J.Ajhg.2012.06.014  0.56
2012 Degnan JH, Rosenberg NA, Stadler T. A characterization of the set of species trees that produce anomalous ranked gene trees. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1558-68. PMID 22868677 DOI: 10.1109/Tcbb.2012.110  1
2012 Wang C, Schroeder KB, Rosenberg NA. A maximum-likelihood method to correct for allelic dropout in microsatellite data with no replicate genotypes. Genetics. 192: 651-69. PMID 22851645 DOI: 10.1534/Genetics.112.139519  0.56
2012 Pemberton TJ, Li FY, Hanson EK, Mehta NU, Choi S, Ballantyne J, Belmont JW, Rosenberg NA, Tyler-Smith C, Patel PI. Impact of restricted marital practices on genetic variation in an endogamous Gujarati group. American Journal of Physical Anthropology. 149: 92-103. PMID 22729696 DOI: 10.1002/Ajpa.22101  0.56
2012 Helmkamp LJ, Jewett EM, Rosenberg NA. Improvements to a class of distance matrix methods for inferring species trees from gene trees. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 632-49. PMID 22697239 DOI: 10.1089/Cmb.2012.0042  0.56
2012 Jewett EM, Zawistowski M, Rosenberg NA, Zöllner S. A coalescent model for genotype imputation. Genetics. 191: 1239-55. PMID 22595242 DOI: 10.1534/Genetics.111.137984  0.56
2012 Bryant D, Bouckaert R, Felsenstein J, Rosenberg NA, RoyChoudhury A. Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis. Molecular Biology and Evolution. 29: 1917-32. PMID 22422763 DOI: 10.1093/Molbev/Mss086  0.56
2012 Jewett EM, Rosenberg NA. iGLASS: an improvement to the GLASS method for estimating species trees from gene trees. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 293-315. PMID 22216756 DOI: 10.1089/Cmb.2011.0231  0.56
2012 San Lucas FA, Rosenberg NA, Scheet P. Haploscope: a tool for the graphical display of haplotype structure in populations. Genetic Epidemiology. 36: 17-21. PMID 22147662 DOI: 10.1002/Gepi.20640  1
2012 Degnan JH, Rosenberg NA, Stadler T. The probability distribution of ranked gene trees on a species tree. Mathematical Biosciences. 235: 45-55. PMID 22075548 DOI: 10.1016/J.Mbs.2011.10.006  1
2012 Reddy SB, Rosenberg NA. Refining the relationship between homozygosity and the frequency of the most frequent allele. Journal of Mathematical Biology. 64: 87-108. PMID 21305294 DOI: 10.1007/S00285-011-0406-8  1
2011 Rosenberg NA. A population-genetic perspective on the similarities and differences among worldwide human populations. Human Biology. 83: 659-84. PMID 22276967 DOI: 10.3378/027.083.0601  1
2011 Huang L, Jakobsson M, Pemberton TJ, Ibrahim M, Nyambo T, Omar S, Pritchard JK, Tishkoff SA, Rosenberg NA. Haplotype variation and genotype imputation in African populations. Genetic Epidemiology. 35: 766-80. PMID 22125220 DOI: 10.1002/Gepi.20626  1
2011 Verdu P, Rosenberg NA. A general mechanistic model for admixture histories of hybrid populations. Genetics. 189: 1413-26. PMID 21968194 DOI: 10.1534/Genetics.111.132787  1
2011 Ramachandran S, Rosenberg NA. A test of the influence of continental axes of orientation on patterns of human gene flow. American Journal of Physical Anthropology. 146: 515-29. PMID 21913175 DOI: 10.1002/Ajpa.21533  1
2011 DeGiorgio M, Degnan JH, Rosenberg NA. Coalescence-time distributions in a serial founder model of human evolutionary history. Genetics. 189: 579-93. PMID 21775469 DOI: 10.1534/Genetics.111.129296  1
2011 Boca SM, Rosenberg NA. Mathematical properties of Fst between admixed populations and their parental source populations. Theoretical Population Biology. 80: 208-16. PMID 21640742 DOI: 10.1016/J.Tpb.2011.05.003  1
2011 Szpiech ZA, Rosenberg NA. On the size distribution of private microsatellite alleles. Theoretical Population Biology. 80: 100-13. PMID 21514313 DOI: 10.1016/J.Tpb.2011.03.006  1
2011 Yang Z, Rosenthal M, Rosenberg NA, Talarico S, Zhang L, Marrs C, Thomsen VØ, Lillebaek T, Andersen AB. How dormant is Mycobacterium tuberculosis during latency? A study integrating genomics and molecular epidemiology. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1164-7. PMID 21315848 DOI: 10.1016/J.Meegid.2011.02.002  1
2011 Buzbas EO, Joyce P, Rosenberg NA. Inference on the strength of balancing selection for epistatically interacting loci. Theoretical Population Biology. 79: 102-13. PMID 21277883 DOI: 10.1016/J.Tpb.2011.01.002  1
2011 Than CV, Rosenberg NA. Consistency properties of species tree inference by minimizing deep coalescences. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1-15. PMID 21210728 DOI: 10.1089/Cmb.2010.0102  1
2010 DeGiorgio M, Jankovic I, Rosenberg NA. Unbiased estimation of gene diversity in samples containing related individuals: exact variance and arbitrary ploidy. Genetics. 186: 1367-87. PMID 20923981 DOI: 10.1534/Genetics.110.121756  1
2010 Pemberton TJ, Wang C, Li JZ, Rosenberg NA. Inference of unexpected genetic relatedness among individuals in HapMap Phase III. American Journal of Human Genetics. 87: 457-64. PMID 20869033 DOI: 10.1016/J.Ajhg.2010.08.014  1
2010 Borràs E, Pineda M, Blanco I, Jewett EM, Wang F, Teulé A, Caldés T, Urioste M, Martínez-Bouzas C, Brunet J, Balmaña J, Torres A, Ramón y Cajal T, Sanz J, Pérez-Cabornero L, ... ... Rosenberg NA, et al. MLH1 founder mutations with moderate penetrance in Spanish Lynch syndrome families. Cancer Research. 70: 7379-91. PMID 20858721 DOI: 10.1158/0008-5472.Can-10-0570  1
2010 Jankovic I, vonHoldt BM, Rosenberg NA. Heterozygosity of the Yellowstone wolves. Molecular Ecology. 19: 3246-9. PMID 20670367 DOI: 10.1111/J.1365-294X.2010.04746.X  1
2010 Rosenberg NA, Huang L, Jewett EM, Szpiech ZA, Jankovic I, Boehnke M. Genome-wide association studies in diverse populations. Nature Reviews. Genetics. 11: 356-66. PMID 20395969 DOI: 10.1038/Nrg2760  1
2010 Wang C, Szpiech ZA, Degnan JH, Jakobsson M, Pemberton TJ, Hardy JA, Singleton AB, Rosenberg NA. Comparing spatial maps of human population-genetic variation using Procrustes analysis. Statistical Applications in Genetics and Molecular Biology. 9: Article 13. PMID 20196748 DOI: 10.2202/1544-6115.1493  1
2010 Rosenberg NA, Degnan JH. Coalescent histories for discordant gene trees and species trees. Theoretical Population Biology. 77: 145-51. PMID 20064540 DOI: 10.1016/J.Tpb.2009.12.004  1
2010 Mosher JT, Pemberton TJ, Harter K, Wang C, Buzbas EO, Dvorak P, Simón C, Morrison SJ, Rosenberg NA. Lack of population diversity in commonly used human embryonic stem-cell lines. The New England Journal of Medicine. 362: 183-5. PMID 20018958 DOI: 10.1056/Nejmc0910371  1
2009 Degnan JH, DeGiorgio M, Bryant D, Rosenberg NA. Properties of consensus methods for inferring species trees from gene trees. Systematic Biology. 58: 35-54. PMID 20525567 DOI: 10.1093/Sysbio/Syp008  1
2009 Pemberton TJ, Sandefur CI, Jakobsson M, Rosenberg NA. Sequence determinants of human microsatellite variability. Bmc Genomics. 10: 612. PMID 20015383 DOI: 10.1186/1471-2164-10-612  1
2009 Kopelman NM, Stone L, Wang C, Gefel D, Feldman MW, Hillel J, Rosenberg NA. Genomic microsatellites identify shared Jewish ancestry intermediate between Middle Eastern and European populations. Bmc Genetics. 10: 80. PMID 19995433 DOI: 10.1186/1471-2156-10-80  1
2009 Huang L, Wang C, Rosenberg NA. The relationship between imputation error and statistical power in genetic association studies in diverse populations. American Journal of Human Genetics. 85: 692-8. PMID 19853241 DOI: 10.1016/J.Ajhg.2009.09.017  1
2009 DeGiorgio M, Jakobsson M, Rosenberg NA. Out of Africa: modern human origins special feature: explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa. Proceedings of the National Academy of Sciences of the United States of America. 106: 16057-62. PMID 19706453 DOI: 10.1073/Pnas.0903341106  1
2009 Benner JS, Chapman RH, Petrilla AA, Tang SS, Rosenberg N, Schwartz JS. Association between prescription burden and medication adherence in patients initiating antihypertensive and lipid-lowering therapy. American Journal of Health-System Pharmacy : Ajhp : Official Journal of the American Society of Health-System Pharmacists. 66: 1471-7. PMID 19667004 DOI: 10.2146/ajhp080238  1
2009 Degnan JH, Rosenberg NA. Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in Ecology & Evolution. 24: 332-40. PMID 19307040 DOI: 10.1016/J.Tree.2009.01.009  1
2009 Schroeder KB, Jakobsson M, Crawford MH, Schurr TG, Boca SM, Conrad DF, Tito RY, Osipova LP, Tarskaia LA, Zhadanov SI, Wall JD, Pritchard JK, Malhi RS, Smith DG, Rosenberg NA. Haplotypic background of a private allele at high frequency in the Americas. Molecular Biology and Evolution. 26: 995-1016. PMID 19221006 DOI: 10.1093/Molbev/Msp024  1
2009 Huang L, Li Y, Singleton AB, Hardy JA, Abecasis G, Rosenberg NA, Scheet P. Genotype-imputation accuracy across worldwide human populations. American Journal of Human Genetics. 84: 235-50. PMID 19215730 DOI: 10.1016/J.Ajhg.2009.01.013  1
2009 Rosenberg NA, Vanliere JM. Replication of genetic associations as pseudoreplication due to shared genealogy. Genetic Epidemiology. 33: 479-87. PMID 19191270 DOI: 10.1002/Gepi.20400  1
2009 Agarwal S, Tang SS, Rosenberg N, Pettitt D, McLaughlin T, Joyce A, Schwartz JS. Does synchronizing initiation of therapy affect adherence to concomitant use of antihypertensive and lipid-lowering therapy? American Journal of Therapeutics. 16: 119-26. PMID 19114872 DOI: 10.1097/MJT.0b013e31816b69bc  1
2009 DeGiorgio M, Rosenberg NA. An unbiased estimator of gene diversity in samples containing related individuals. Molecular Biology and Evolution. 26: 501-12. PMID 18988687 DOI: 10.1093/Molbev/Msn254  1
2008 Ramachandran S, Rosenberg NA, Feldman MW, Wakeley J. Population differentiation and migration: coalescence times in a two-sex island model for autosomal and X-linked loci. Theoretical Population Biology. 74: 291-301. PMID 18817799 DOI: 10.1016/J.Tpb.2008.08.003  1
2008 Szpiech ZA, Jakobsson M, Rosenberg NA. ADZE: a rarefaction approach for counting alleles private to combinations of populations. Bioinformatics (Oxford, England). 24: 2498-504. PMID 18779233 DOI: 10.1093/Bioinformatics/Btn478  1
2008 Rosenberg NA, Jakobsson M. The relationship between homozygosity and the frequency of the most frequent allele. Genetics. 179: 2027-36. PMID 18689892 DOI: 10.1534/Genetics.107.084772  1
2008 VanLiere JM, Rosenberg NA. Mathematical properties of the r2 measure of linkage disequilibrium. Theoretical Population Biology. 74: 130-7. PMID 18572214 DOI: 10.1016/J.Tpb.2008.05.006  1
2008 Pemberton TJ, Jakobsson M, Conrad DF, Coop G, Wall JD, Pritchard JK, Patel PI, Rosenberg NA. Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India. Annals of Human Genetics. 72: 535-46. PMID 18513279 DOI: 10.1111/J.1469-1809.2008.00457.X  1
2008 François O, Blum MG, Jakobsson M, Rosenberg NA. Demographic history of european populations of Arabidopsis thaliana. Plos Genetics. 4: e1000075. PMID 18483550 DOI: 10.1371/Journal.Pgen.1000075  1
2008 Rosenberg NA, Tao R. Discordance of species trees with their most likely gene trees: the case of five taxa. Systematic Biology. 57: 131-40. PMID 18300026 DOI: 10.1080/10635150801905535  1
2008 Jakobsson M, Scholz SW, Scheet P, Gibbs JR, VanLiere JM, Fung HC, Szpiech ZA, Degnan JH, Wang K, Guerreiro R, Bras JM, Schymick JC, Hernandez DG, Traynor BJ, Simon-Sanchez J, ... ... Rosenberg NA, et al. Genotype, haplotype and copy-number variation in worldwide human populations. Nature. 451: 998-1003. PMID 18288195 DOI: 10.1038/Nature06742  1
2008 Macpherson JM, González J, Witten DM, Davis JC, Rosenberg NA, Hirsh AE, Petrov DA. Nonadaptive explanations for signatures of partial selective sweeps in Drosophila. Molecular Biology and Evolution. 25: 1025-42. PMID 18199829 DOI: 10.1093/Molbev/Msn007  1
2007 Wang S, Lewis CM, Jakobsson M, Ramachandran S, Ray N, Bedoya G, Rojas W, Parra MV, Molina JA, Gallo C, Mazzotti G, Poletti G, Hill K, Hurtado AM, Labuda D, ... ... Rosenberg NA, et al. Genetic variation and population structure in native Americans. Plos Genetics. 3: e185. PMID 18039031 DOI: 10.1371/Journal.Pgen.0030185  1
2007 Zhang K, Rosenberg NA. On the genealogy of a duplicated microsatellite. Genetics. 177: 2109-22. PMID 17947445 DOI: 10.1534/Genetics.106.063131  1
2007 Chaudhuri A, Miller M, Nesto R, Rosenberg N, Dandona P. Targeting glucose in acute myocardial infarction: Has glucose, insulin, and potassium infusion missed the target? Diabetes Care. 30: 3026-3028. PMID 17848612 DOI: 10.2337/Dc07-1220  1
2007 Rosenberg NA. Counting coalescent histories. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 360-77. PMID 17563317 DOI: 10.1089/Cmb.2006.0109  1
2007 Jakobsson M, Rosenberg NA. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics (Oxford, England). 23: 1801-6. PMID 17485429 DOI: 10.1093/Bioinformatics/Btm233  1
2007 Blum MG, Rosenberg NA. Estimating the number of ancestral lineages using a maximum-likelihood method based on rejection sampling. Genetics. 176: 1741-57. PMID 17435232 DOI: 10.1534/Genetics.106.066233  1
2007 David L, Rosenberg NA, Lavi U, Feldman MW, Hillel J. Genetic diversity and population structure inferred from the partially duplicated genome of domesticated carp, Cyprinus carpio L. Genetics, Selection, Evolution : Gse. 39: 319-40. PMID 17433244 DOI: 10.1186/1297-9686-39-3-319  1
2007 Jakobsson M, Rosenberg NA. The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species. Theoretical Population Biology. 71: 502-23. PMID 17383701 DOI: 10.1016/J.Tpb.2007.01.004  1
2007 Rosenberg NA. Statistical tests for taxonomic distinctiveness from observations of monophyly. Evolution; International Journal of Organic Evolution. 61: 317-23. PMID 17348942 DOI: 10.1111/J.1558-5646.2007.00023.X  1
2007 Schroeder KB, Schurr TG, Long JC, Rosenberg NA, Crawford MH, Tarskaia LA, Osipova LP, Zhadanov SI, Smith DG. A private allele ubiquitous in the Americas. Biology Letters. 3: 218-23. PMID 17301009 DOI: 10.1098/Rsbl.2006.0609  1
2007 Rosenberg NA, Blum MG. Sampling properties of homozygosity-based statistics for linkage disequilibrium. Mathematical Biosciences. 208: 33-47. PMID 17157882 DOI: 10.1016/J.Mbs.2006.07.001  1
2006 Rosenberg NA, Mahajan S, Gonzalez-Quevedo C, Blum MG, Nino-Rosales L, Ninis V, Das P, Hegde M, Molinari L, Zapata G, Weber JL, Belmont JW, Patel PI. Low levels of genetic divergence across geographically and linguistically diverse populations from India. Plos Genetics. 2: e215. PMID 17194221 DOI: 10.1371/Journal.Pgen.0020215  1
2006 Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics. 38: 1251-60. PMID 17057719 DOI: 10.1038/Ng1911  1
2006 Rosenberg NA. Standardized subsets of the HGDP-CEPH Human Genome Diversity Cell Line Panel, accounting for atypical and duplicated samples and pairs of close relatives. Annals of Human Genetics. 70: 841-7. PMID 17044859 DOI: 10.1111/J.1469-1809.2006.00285.X  1
2006 Degnan JH, Rosenberg NA. Discordance of species trees with their most likely gene trees. Plos Genetics. 2: e68. PMID 16733550 DOI: 10.1371/Journal.Pgen.0020068  1
2006 Rosenberg NA, Nordborg M. A general population-genetic model for the production by population structure of spurious genotype-phenotype associations in discrete, admixed or spatially distributed populations. Genetics. 173: 1665-78. PMID 16582435 DOI: 10.1534/Genetics.105.055335  1
2006 Rosenberg NA. The mean and variance of the numbers of r-pronged nodes and r-caterpillars in Yule-generated genealogical trees Annals of Combinatorics. 10: 129-146. DOI: 10.1007/S00026-006-0278-6  1
2005 Rosenberg NA, Mahajan S, Ramachandran S, Zhao C, Pritchard JK, Feldman MW. Clines, clusters, and the effect of study design on the inference of human population structure. Plos Genetics. 1: e70. PMID 16355252 DOI: 10.1371/Journal.Pgen.0010070  1
2005 Rosenberg NA. Algorithms for selecting informative marker panels for population assignment. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 1183-201. PMID 16305328 DOI: 10.1089/Cmb.2005.12.1183  1
2005 Ramachandran S, Deshpande O, Roseman CC, Rosenberg NA, Feldman MW, Cavalli-Sforza LL. Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Proceedings of the National Academy of Sciences of the United States of America. 102: 15942-7. PMID 16243969 DOI: 10.1073/Pnas.0507611102  1
2005 Rosenberg NA. A sharp minimum on the mean number of steps taken in adaptive walks. Journal of Theoretical Biology. 237: 17-22. PMID 15979094 DOI: 10.1016/J.Jtbi.2005.03.026  1
2005 Nordborg M, Hu TT, Ishino Y, Jhaveri J, Toomajian C, Zheng H, Bakker E, Calabrese P, Gladstone J, Goyal R, Jakobsson M, Kim S, Morozov Y, Padhukasahasram B, Plagnol V, ... Rosenberg NA, et al. The pattern of polymorphism in Arabidopsis thaliana. Plos Biology. 3: e196. PMID 15907155 DOI: 10.1371/Journal.Pbio.0030196  1
2005 Innan H, Zhang K, Marjoram P, Tavaré S, Rosenberg NA. Statistical tests of the coalescent model based on the haplotype frequency distribution and the number of segregating sites. Genetics. 169: 1763-77. PMID 15654103 DOI: 10.1534/Genetics.104.032219  1
2004 Ramachandran S, Rosenberg NA, Zhivotovsky LA, Feldman MW. Robustness of the inference of human population structure: a comparison of X-chromosomal and autosomal microsatellites. Human Genomics. 1: 87-97. PMID 15601537 DOI: 10.1186/1479-7364-1-2-87  1
2004 Rosenberg NA, Calabrese PP. Polyploid and multilocus extensions of the Wahlund inequality. Theoretical Population Biology. 66: 381-91. PMID 15560915 DOI: 10.1016/J.Tpb.2004.07.001  1
2004 Tanaka MM, Rosenberg NA, Small PM. The control of copy number of IS6110 in Mycobacterium tuberculosis. Molecular Biology and Evolution. 21: 2195-201. PMID 15317877 DOI: 10.1093/Molbev/Msh234  1
2004 Rosenberg NA. DISTRUCT: A program for the graphical display of population structure Molecular Ecology Notes. 4: 137-138. DOI: 10.1046/J.1471-8286.2003.00566.X  1
2003 Horton R, Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. Read all about it: The Lancet's Paper of the Year, 2003. Lancet. 362: 2101-3. PMID 14697815  1
2003 Rosenberg NA, Li LM, Ward R, Pritchard JK. Informativeness of genetic markers for inference of ancestry. American Journal of Human Genetics. 73: 1402-22. PMID 14631557 DOI: 10.1086/380416  1
2003 Rosenberg NA. The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly, and polyphyly in a coalescent model. Evolution; International Journal of Organic Evolution. 57: 1465-77. PMID 12940352 DOI: 10.1111/J.0014-3820.2003.Tb00355.X  1
2003 Rosenberg NA, Hirsh AE. On the use of star-shaped genealogies in inference of coalescence times. Genetics. 164: 1677-82. PMID 12930771  1
2003 Rosenberg NA, Tsolaki AG, Tanaka MM. Estimating change rates of genetic markers using serial samples: applications to the transposon IS6110 in Mycobacterium tuberculosis. Theoretical Population Biology. 63: 347-63. PMID 12742178 DOI: 10.1016/S0040-5809(03)00010-8  1
2003 Zhivotovsky LA, Rosenberg NA, Feldman MW. Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers. American Journal of Human Genetics. 72: 1171-86. PMID 12690579 DOI: 10.1086/375120  1
2002 Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. Genetic structure of human populations. Science (New York, N.Y.). 298: 2381-5. PMID 12493913 DOI: 10.1126/Science.1078311  1
2002 Rosenberg NA, Nordborg M. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nature Reviews. Genetics. 3: 380-90. PMID 11988763 DOI: 10.1038/Nrg795  1
2002 Rosenberg NA. The probability of topological concordance of gene trees and species trees. Theoretical Population Biology. 61: 225-47. PMID 11969392 DOI: 10.1006/Tpbi.2001.1568  1
2002 Rosenberg NA, Nettle D. Joining forces to uncover human evolutionary history Trends in Ecology and Evolution. 17: 301-302. DOI: 10.1016/S0169-5347(02)02506-5  1
2001 Rosenberg NA, Burke T, Elo K, Feldman MW, Freidlin PJ, Groenen MA, Hillel J, Mäki-Tanila A, Tixier-Boichard M, Vignal A, Wimmers K, Weigend S. Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds. Genetics. 159: 699-713. PMID 11606545  1
2001 Tanaka MM, Rosenberg NA. Optimal estimation of transposition rates of insertion sequences for molecular epidemiology. Statistics in Medicine. 20: 2409-20. PMID 11512131 DOI: 10.1002/Sim.910  1
2001 Rosenberg NA, Woolf E, Pritchard JK, Schaap T, Gefel D, Shpirer I, Lavi U, Bonne-Tamir B, Hillel J, Feldman MW. Distinctive genetic signatures in the Libyan Jews. Proceedings of the National Academy of Sciences of the United States of America. 98: 858-63. PMID 11158561 DOI: 10.1073/Pnas.98.3.858  1
2000 Jin L, Baskett ML, Cavalli-Sforza LL, Zhivotovsky LA, Feldman MW, Rosenberg NA. Microsatellite evolution in modern humans: a comparison of two data sets from the same populations. Annals of Human Genetics. 64: 117-34. PMID 11246466 DOI: 10.1046/J.1469-1809.2000.6420117.X  1
2000 Pritchard JK, Stephens M, Rosenberg NA, Donnelly P. Association mapping in structured populations. American Journal of Human Genetics. 67: 170-81. PMID 10827107 DOI: 10.1086/302959  1
1999 Pritchard JK, Rosenberg NA. Use of unlinked genetic markers to detect population stratification in association studies. American Journal of Human Genetics. 65: 220-8. PMID 10364535 DOI: 10.1086/302449  1
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