Chris T. Hittinger - Publications

Affiliations: 
2012- Genetics University of Wisconsin, Madison, Madison, WI 

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Shen XX, Steenwyk JL, LaBella AL, Opulente DA, Zhou X, Kominek J, Li Y, Groenewald M, Hittinger CT, Rokas A. Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota. Science Advances. 6. PMID 33148650 DOI: 10.1126/sciadv.abd0079  1
2020 Peris D, Alexander WG, Fisher KJ, Moriarty RV, Basuino MG, Ubbelohde EJ, Wrobel RL, Hittinger CT. Synthetic hybrids of six yeast species. Nature Communications. 11: 2085. PMID 32350251 DOI: 10.1038/S41467-020-15559-4  0.88
2020 Dharampal PS, Diaz-Garcia L, Haase MAB, Zalapa J, Currie CR, Hittinger CT, Steffan SA. Microbial Diversity Associated with the Pollen Stores of Captive-Bred Bumble Bee Colonies. Insects. 11. PMID 32316296 DOI: 10.3390/Insects11040250  0.76
2020 Langdon QK, Peris D, Eizaguirre JI, Opulente DA, Buh KV, Sylvester K, Jarzyna M, Rodríguez ME, Lopes CA, Libkind D, Hittinger CT. Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids. Plos Genetics. 16: e1008680. PMID 32251477 DOI: 10.1371/Journal.Pgen.1008680  0.88
2019 Langdon QK, Peris D, Baker EP, Opulente DA, Nguyen HV, Bond U, Gonçalves P, Sampaio JP, Libkind D, Hittinger CT. Fermentation innovation through complex hybridization of wild and domesticated yeasts. Nature Ecology & Evolution. PMID 31636426 DOI: 10.1038/S41559-019-0998-8  1
2019 Labella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Variation and selection on codon usage bias across an entire subphylum. Plos Genetics. 15: e1008304. PMID 31365533 DOI: 10.1371/Journal.Pgen.1008304  1
2019 Krassowski T, Kominek J, Shen XX, Opulente DA, Zhou X, Rokas A, Hittinger CT, Wolfe KH. Multiple Reinventions of Mating-type Switching during Budding Yeast Evolution. Current Biology : Cb. PMID 31353182 DOI: 10.1016/J.Cub.2019.06.056  1
2019 Steenwyk JL, Opulente DA, Kominek J, Shen XX, Zhou X, Labella AL, Bradley NP, Eichman BF, Čadež N, Libkind D, DeVirgilio J, Hulfachor AB, Kurtzman CP, Hittinger CT, Rokas A. Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts. Plos Biology. 17: e3000255. PMID 31112549 DOI: 10.1371/Journal.Pbio.3000255  1
2019 Opulente DA, Langdon QK, Buh KV, Haase MAB, Sylvester K, Moriarty RV, Jarzyna M, Considine SL, Schneider RM, Hittinger CT. Pathogenic budding yeasts isolated outside of clinical settings. Fems Yeast Research. 19. PMID 31076749 DOI: 10.1093/Femsyr/Foz032  0.84
2019 Baker EP, Hittinger CT. Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function. Plos Genetics. 15: e1007786. PMID 30946740 DOI: 10.1371/Journal.Pgen.1007786  1
2019 Kominek J, Doering DT, Opulente DA, Shen XX, Zhou X, DeVirgilio J, Hulfachor AB, Groenewald M, Mcgee MA, Karlen SD, Kurtzman CP, Rokas A, Hittinger CT. Eukaryotic Acquisition of a Bacterial Operon. Cell. PMID 30799038 DOI: 10.1016/J.Cell.2019.01.034  1
2019 Baker EP, Peris D, Moriarty RV, Li XC, Fay JC, Hittinger CT. Mitochondrial DNA and temperature tolerance in lager yeasts. Science Advances. 5: eaav1869. PMID 30729163 DOI: 10.1126/Sciadv.Aav1869  1
2019 Čadež N, Bellora N, Ulloa R, Hittinger CT, Libkind D. Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina. Plos One. 14: e0210792. PMID 30699175 DOI: 10.1371/Journal.Pone.0210792  0.52
2018 Krause DJ, Kominek J, Opulente DA, Shen XX, Zhou X, Langdon QK, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT. Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 30297402 DOI: 10.1073/Pnas.1806268115  1
2018 Langdon QK, Peris D, Kyle B, Hittinger CT. sppIDer: a species identification tool to investigate hybrid genomes with high-throughput sequencing. Molecular Biology and Evolution. PMID 30184140 DOI: 10.1093/Molbev/Msy166  0.88
2018 Eizaguirre JI, Peris D, Rodríguez ME, Lopes CA, De Los Ríos P, Hittinger CT, Libkind D. Phylogeography of the wild Lager-brewing ancestor (Saccharomyces eubayanus) in Patagonia. Environmental Microbiology. PMID 30105823 DOI: 10.1111/1462-2920.14375  0.88
2018 Higgins DA, Young MK, Tremaine M, Sardi M, Fletcher JM, Agnew M, Liu L, Dickinson Q, Peris D, Wrobel RL, Hittinger CT, Gasch AP, Singer SW, Simmons BA, Landick R, et al. Natural Variation in the Multidrug Efflux Pump Underlies Ionic Liquid Tolerance in Yeast. Genetics. PMID 30045857 DOI: 10.1534/Genetics.118.301161  0.88
2018 Kuang MC, Kominek J, Alexander WG, Cheng JF, Wrobel RL, Hittinger CT. Repeated cis-regulatory tuning of a metabolic bottleneck gene during evolution. Molecular Biology and Evolution. PMID 29788479 DOI: 10.1093/Molbev/Msy102  0.84
2018 Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH. Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. Nature Communications. 9: 1887. PMID 29760453 DOI: 10.1038/S41467-018-04374-7  1
2018 Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen XX, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P. Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage. Elife. 7. PMID 29648535 DOI: 10.7554/Elife.33034  1
2018 Opulente DA, Rollinson EJ, Bernick-Roehr C, Hulfachor AB, Rokas A, Kurtzman CP, Hittinger CT. Factors driving metabolic diversity in the budding yeast subphylum. Bmc Biology. 16: 26. PMID 29499717 DOI: 10.1186/S12915-018-0498-3  1
2017 Vakirlis NN, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I. A molecular portrait of de novo genes in yeasts. Molecular Biology and Evolution. PMID 29220506 DOI: 10.1093/Molbev/Msx315  0.8
2017 Zhou X, Shen X, Hittinger CT, Rokas A. Evaluating fast maximum likelihood-based phylogenetic programs using empirical phylogenomic data sets. Molecular Biology and Evolution. PMID 29177474 DOI: 10.1093/Molbev/Msx302  1
2017 Peris D, Pérez-Torrado R, Hittinger CT, Barrio E, Querol A. On the origins and industrial applications of Saccharomyces cerevisiae x Saccharomyces kudriavzevii hybrids. Yeast (Chichester, England). PMID 29027262 DOI: 10.1002/Yea.3283  0.88
2017 Morais CG, Batista TM, Kominek J, Borelli BM, Furtado C, Moreira RG, Franco GR, Rosa LH, Fonseca C, Hittinger CT, Lachance MA, Rosa CA. Spathaspora boniae sp. nov., a D-xylose-fermenting species in the Candida albicans/Lodderomyces clade. International Journal of Systematic and Evolutionary Microbiology. PMID 28884677 DOI: 10.1099/Ijsem.0.002186  0.76
2017 Shen XX, Hittinger CT, Rokas A. Contentious relationships in phylogenomic studies can be driven by a handful of genes. Nature Ecology & Evolution. 1: 126. PMID 28812701 DOI: 10.1038/S41559-017-0126  1
2017 Gibson B, Geertman JA, Hittinger CT, Krogerus K, Libkind D, Louis EJ, Magalhães F, Sampaio JP. New yeasts - new brews: modern approaches to brewing yeast design and development. Fems Yeast Research. PMID 28582493 DOI: 10.1093/Femsyr/Fox038  0.6
2017 Haase MAB, Kominek J, Langdon QK, Kurtzman CP, Hittinger CT. Genome sequence and physiological analysis of Yamadazyma laniorum f.a. sp. nov. and a reevaluation of the apocryphal xylose fermentation of its sister species Candida tenuis. Fems Yeast Research. PMID 28419220 DOI: 10.1093/Femsyr/Fox019  0.8
2017 Peris D, Moriarty RV, Alexander WG, Baker E, Sylvester K, Sardi M, Langdon QK, Libkind D, Wang QM, Bai FY, Leducq JB, Charron G, Landry CR, Sampaio JP, Gonçalves P, ... ... Hittinger CT, et al. Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production. Biotechnology For Biofuels. 10: 78. PMID 28360936 DOI: 10.1186/S13068-017-0763-7  0.88
2016 Bellora N, Moliné M, David-Palma M, Coelho MA, Hittinger CT, Sampaio JP, Gonçalves P, Libkind D. Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma. Bmc Genomics. 17: 901. PMID 27829365 DOI: 10.1186/S12864-016-3244-7  0.6
2016 Kuang MC, Hutchins PD, Russell JD, Coon JJ, Hittinger CT. Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network. Elife. 5. PMID 27690225 DOI: 10.7554/Elife.19027  0.64
2016 Shen XX, Zhou X, Kominek J, Kurtzman CP, Hittinger CT, Rokas A. Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data. G3 (Bethesda, Md.). PMID 27672114 DOI: 10.1534/G3.116.034744  1
2016 Zhou X, Peris D, Kominek J, Kurtzman CP, Hittinger CT, Rokas A. in silico Whole Genome Sequencer & Analyzer (iWGS): A Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies. G3 (Bethesda, Md.). PMID 27638685 DOI: 10.1534/G3.116.034249  1
2016 Leducq JB, Nielly-Thibault L, Charron G, Eberlein C, Verta JP, Samani P, Sylvester K, Hittinger CT, Bell G, Landry CR. Speciation driven by hybridization and chromosomal plasticity in a wild yeast. Nature Microbiology. 1: 15003. PMID 27571751 DOI: 10.1038/Nmicrobiol.2015.3  0.76
2016 Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, et al. Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535936 DOI: 10.1073/Pnas.1603941113  1
2016 Peris D, Langdon QK, Moriarty RV, Sylvester K, Bontrager M, Charron G, Leducq JB, Landry CR, Libkind D, Hittinger CT. Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus. Plos Genetics. 12: e1006155. PMID 27385107 DOI: 10.1371/Journal.Pgen.1006155  0.88
2016 Wisecaver JH, Alexander WG, King SB, Todd Hittinger C, Rokas A. Dynamic Evolution of Nitric Oxide Detoxifying Flavohemoglobins, a Family of Single-Protein Metabolic Modules in Bacteria and Eukaryotes. Molecular Biology and Evolution. PMID 27189567 DOI: 10.1093/Molbev/Msw073  0.52
2016 Lopes MR, Morais CG, Kominek J, Cadete RM, Soares MA, Uetanabaro AP, Fonseca C, Lachance MA, Hittinger CT, Rosa CA. Genomic analysis and D-xylose fermentation of three novel Spathaspora species: Spathaspora girioi sp. nov., Spathaspora hagerdaliae f. a., sp. nov., and Spathaspora gorwiae f. a., sp. nov. Fems Yeast Research. PMID 27188884 DOI: 10.1093/Femsyr/Fow044  0.76
2016 McIlwain SJ, Peris D, Sardi M, Moskvin OV, Zhan F, Myers KS, Riley NM, Buzzell A, Parreiras LS, Ong IM, Landick R, Coon JJ, Gasch AP, Sato TK, Hittinger CT. Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research. G3 (Bethesda, Md.). 6: 1757-66. PMID 27172212 DOI: 10.1534/G3.116.029389  1
2016 Alexander WG, Wisecaver JH, Rokas A, Hittinger CT. Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035945 DOI: 10.1073/Pnas.1517242113  1
2015 Hittinger CT, Rokas A, Bai FY, Boekhout T, Gonçalves P, Jeffries TW, Kominek J, Lachance MA, Libkind D, Rosa CA, Sampaio JP, Kurtzman CP. Genomics and the making of yeast biodiversity. Current Opinion in Genetics & Development. 35: 100-109. PMID 26649756 DOI: 10.1016/J.Gde.2015.10.008  1
2015 Alexander WG, Peris D, Pfannenstiel BT, Opulente DA, Kuang M, Hittinger CT. Efficient engineering of marker-free synthetic allotetraploids of Saccharomyces. Fungal Genetics and Biology : Fg & B. PMID 26555931 DOI: 10.1016/J.Fgb.2015.11.002  1
2015 Baker E, Wang B, Bellora N, Peris D, Hulfachor AB, Koshalek JA, Adams M, Libkind D, Hittinger CT. The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts. Molecular Biology and Evolution. PMID 26269586 DOI: 10.1093/Molbev/Msv168  1
2015 Coelho MA, Almeida JM, Hittinger CT, Gonçalves P. Draft Genome Sequence of Sporidiobolus salmonicolor CBS 6832, a Red-Pigmented Basidiomycetous Yeast. Genome Announcements. 3. PMID 25999568 DOI: 10.1128/Genomea.00444-15  0.6
2015 Sylvester K, Wang QM, James B, Mendez R, Hulfachor AB, Hittinger CT. Temperature and host preferences drive the diversification of Saccharomyces and other yeasts: a survey and the discovery of eight new yeast species. Fems Yeast Research. 15. PMID 25743785 DOI: 10.1093/Femsyr/Fov002  1
2014 Alexander WG, Doering DT, Hittinger CT. High-efficiency genome editing and allele replacement in prototrophic and wild strains of Saccharomyces. Genetics. 198: 859-66. PMID 25209147 DOI: 10.1534/Genetics.114.170118  1
2014 Peris D, Sylvester K, Libkind D, Gonçalves P, Sampaio JP, Alexander WG, Hittinger CT. Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids. Molecular Ecology. 23: 2031-45. PMID 24612382 DOI: 10.1111/Mec.12702  1
2014 Leducq JB, Charron G, Samani P, Dubé AK, Sylvester K, James B, Almeida P, Sampaio JP, Hittinger CT, Bell G, Landry CR. Local climatic adaptation in a widespread microorganism. Proceedings. Biological Sciences / the Royal Society. 281: 20132472. PMID 24403328 DOI: 10.1098/Rspb.2013.2472  1
2013 Hittinger CT. Saccharomyces diversity and evolution: a budding model genus. Trends in Genetics : Tig. 29: 309-17. PMID 23395329 DOI: 10.1016/J.Tig.2013.01.002  1
2012 Hittinger CT. Evolution. Endless rots most beautiful. Science (New York, N.Y.). 336: 1649-50. PMID 22745411 DOI: 10.1126/Science.1224682  1
2011 Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, Eisen MB, Rine J, Johnston M, Hittinger CT. The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus. G3 (Bethesda, Md.). 1: 11-25. PMID 22384314 DOI: 10.1534/G3.111.000273  1
2011 Libkind D, Hittinger CT, Valério E, Gonçalves C, Dover J, Johnston M, Gonçalves P, Sampaio JP. Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proceedings of the National Academy of Sciences of the United States of America. 108: 14539-44. PMID 21873232 DOI: 10.1073/Pnas.1105430108  1
2010 Hittinger CT, Hesselberth JR. Nucleosome patterning evolution: steady aim despite moving targets. Molecular Systems Biology. 6: 376. PMID 20461077 DOI: 10.1038/Msb.2010.34  1
2010 Hittinger CT, Gonçalves P, Sampaio JP, Dover J, Johnston M, Rokas A. Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature. 464: 54-8. PMID 20164837 DOI: 10.1038/Nature08791  1
2010 Hittinger CT, Johnston M, Tossberg JT, Rokas A. Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 107: 1476-81. PMID 20080632 DOI: 10.1073/Pnas.0910449107  1
2009 Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A. Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics. Molecular Biology and Evolution. 26: 2731-44. PMID 19706727 DOI: 10.1093/Molbev/Msp188  1
2008 Hittinger CT, Carroll SB. Evolution of an insect-specific GROUCHO-interaction motif in the ENGRAILED selector protein. Evolution & Development. 10: 537-45. PMID 18803772 DOI: 10.1111/J.1525-142X.2008.00269.X  1
2007 Hittinger CT, Carroll SB. Gene duplication and the adaptive evolution of a classic genetic switch. Nature. 449: 677-81. PMID 17928853 DOI: 10.1038/Nature06151  1
2007 Rokas A, Hittinger CT. Transcriptional rewiring: the proof is in the eating. Current Biology : Cb. 17: R626-8. PMID 17714646 DOI: 10.1016/J.Cub.2007.06.025  1
2005 Tour E, Hittinger CT, McGinnis W. Evolutionarily conserved domains required for activation and repression functions of the Drosophila Hox protein Ultrabithorax. Development (Cambridge, England). 132: 5271-81. PMID 16284118 DOI: 10.1242/Dev.02138  1
2005 Hittinger CT, Stern DL, Carroll SB. Pleiotropic functions of a conserved insect-specific Hox peptide motif. Development (Cambridge, England). 132: 5261-70. PMID 16267091 DOI: 10.1242/Dev.02146  1
2004 Hittinger CT, Rokas A, Carroll SB. Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts. Proceedings of the National Academy of Sciences of the United States of America. 101: 14144-9. PMID 15381776 DOI: 10.1073/Pnas.0404319101  1
2004 Palangat M, Hittinger CT, Landick R. Downstream DNA selectively affects a paused conformation of human RNA polymerase II. Journal of Molecular Biology. 341: 429-42. PMID 15276834 DOI: 10.1016/J.Jmb.2004.06.009  1
2003 King N, Hittinger CT, Carroll SB. Evolution of key cell signaling and adhesion protein families predates animal origins. Science (New York, N.Y.). 301: 361-3. PMID 12869759 DOI: 10.1126/Science.1083853  1
2003 Guettler S, Jackson EN, Lucchese SA, Honaas L, Green A, Hittinger CT, Tian Y, Lilly WW, Gathman AC. ESTs from the basidiomycete Schizophyllum commune grown on nitrogen-replete and nitrogen-limited media. Fungal Genetics and Biology : Fg & B. 39: 191-8. PMID 12781677 DOI: 10.1016/S1087-1845(03)00017-3  1
2002 Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L, Kresovich S, Matsuoka Y, Doebley J. Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proceedings of the National Academy of Sciences of the United States of America. 99: 9650-5. PMID 12105270 DOI: 10.1073/Pnas.112324299  1
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