| Year |
Citation |
Score |
| 2023 |
Rivas M, Fox GE. Ancestry of RNA/RNA interaction regions within segmented ribosomes. Rna (New York, N.Y.). PMID 37263782 DOI: 10.1261/rna.079654.123 |
0.339 |
|
| 2023 |
Rivas M, Fox GE. How to build a protoribosome: structural insights from the first protoribosome constructs that have proven to be catalytically active. Rna (New York, N.Y.). 29: 263-272. PMID 36604112 DOI: 10.1261/rna.079417.122 |
0.337 |
|
| 2021 |
Rivas M, Fox GE. Nonstandard RNA/RNA Interactions Likely Enhance Folding and Stability of Segmented Ribosomes. Rna (New York, N.Y.). PMID 34876487 DOI: 10.1261/rna.079006.121 |
0.353 |
|
| 2021 |
Tirumalai MR, Rivas M, Tran Q, Fox GE. The Peptidyl Transferase Center: a Window to the Past. Microbiology and Molecular Biology Reviews : Mmbr. e0010421. PMID 34756086 DOI: 10.1128/MMBR.00104-21 |
0.309 |
|
| 2020 |
Stepanov VG, Fox GE. Expansion Segments in Bacterial and Archaeal 5S Ribosomal RNAs. Rna (New York, N.Y.). PMID 33184227 DOI: 10.1261/rna.077123.120 |
0.384 |
|
| 2020 |
Rivas M, Fox GE. Further Characterization of the Pseudo-Symmetrical Ribosomal Region. Life (Basel, Switzerland). 10. PMID 32937913 DOI: 10.3390/Life10090201 |
0.406 |
|
| 2020 |
Tirumalai MR, Kaelber JT, Park DR, Tran Q, Fox GE. Cryo-Electron Microscopy Visualization of a Large Insertion in the 5S ribosomal RNA of the Extremely Halophilic Archaeon Halococcus morrhuae. Febs Open Bio. PMID 32865340 DOI: 10.1002/2211-5463.12962 |
0.345 |
|
| 2018 |
Tirumalai MR, Tran Q, Paci M, Chavan D, Marathe A, Fox GE. Exploration of RNA Sequence Space in the Absence of a Replicase. Journal of Molecular Evolution. PMID 29748740 DOI: 10.1007/S00239-018-9846-8 |
0.46 |
|
| 2017 |
Stepanov VG, Roberts DJ, Fox GE. Draft Genome Sequence of Marinobacter vinifirmus Type Strain FB1. Genome Announcements. 5. PMID 28963221 DOI: 10.1128/Genomea.01058-17 |
0.352 |
|
| 2017 |
Venkateswaran K, Checinska Sielaff A, Ratnayake S, Pope RK, Blank TE, Stepanov VG, Fox GE, van Tongeren SP, Torres C, Allen J, Jaing C, Pierson D, Perry J, Koren S, Phillippy A, et al. Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station. Genome Announcements. 5. PMID 28798168 DOI: 10.1128/Genomea.00680-17 |
0.308 |
|
| 2016 |
Stepanov VG, Tirumalai MR, Montazari S, Checinska A, Venkateswaran K, Fox GE. Bacillus pumilus SAFR-032 Genome Revisited: Sequence Update and Re-Annotation. Plos One. 11: e0157331. PMID 27351589 DOI: 10.1371/Journal.Pone.0157331 |
0.349 |
|
| 2016 |
Stepanov VG, Xiao Y, Lopez AJ, Roberts DJ, Fox GE. Draft Genome Sequence of Marinobacter sp. Strain P4B1, an Electrogenic Perchlorate-Reducing Strain Isolated from a Long-Term Mixed Enrichment Culture of Marine Bacteria. Genome Announcements. 4. PMID 26798109 DOI: 10.1128/Genomea.01617-15 |
0.316 |
|
| 2016 |
Paci M, Fox GE. Centers of Motion Associated with EF-Tu Binding to the Ribosome. Rna Biology. 0. PMID 26786136 DOI: 10.1080/15476286.2015.1114204 |
0.316 |
|
| 2015 |
Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD. History of the ribosome and the origin of translation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621738 DOI: 10.1073/Pnas.1509761112 |
0.368 |
|
| 2015 |
Stepanov VG, Fox GE. In Vivo Production of Small Recombinant RNAs Embedded in a 5S rRNA-Derived Protective Scaffold. Methods in Molecular Biology (Clifton, N.J.). 1316: 45-65. PMID 25967052 DOI: 10.1007/978-1-4939-2730-2_5 |
0.413 |
|
| 2015 |
Yerrapragada S, Shukla A, Hallsworth-Pepin K, Choi K, Wollam A, Clifton S, Qin X, Muzny D, Raghuraman S, Ashki H, Uzman A, Highlander SK, Fryszczyn BG, Fox GE, Tirumalai MR, et al. Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601. Genome Announcements. 3. PMID 25953173 DOI: 10.1128/Genomea.00355-15 |
0.736 |
|
| 2015 |
Paci M, Fox GE. Major centers of motion in the large ribosomal RNAs. Nucleic Acids Research. 43: 4640-9. PMID 25870411 DOI: 10.1093/Nar/Gkv289 |
0.339 |
|
| 2015 |
Fox GE, Paci M, Tran Q, Petrov AS, Williams LD. Ribosome dynamics and the evolutionary history of ribosomes Proceedings of Spie - the International Society For Optical Engineering. 9606. DOI: 10.1117/12.2187098 |
0.326 |
|
| 2014 |
Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, Williams LD. Evolution of the ribosome at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 10251-6. PMID 24982194 DOI: 10.1073/Pnas.1407205111 |
0.41 |
|
| 2014 |
Stepanov VG, Vaishampayan P, Venkateswaran K, Fox GE. Draft Genome Sequence of Deinococcus phoenicis, a Novel Strain Isolated during the Phoenix Lander Spacecraft Assembly. Genome Announcements. 2. PMID 24762934 DOI: 10.1128/Genomea.00301-14 |
0.32 |
|
| 2014 |
Sripakdeevong P, Cevec M, Chang AT, Erat MC, Ziegeler M, Zhao Q, Fox GE, Gao X, Kennedy SD, Kierzek R, Nikonowicz EP, Schwalbe H, Sigel RK, Turner DH, Das R. Structure determination of noncanonical RNA motifs guided by ¹H NMR chemical shifts. Nature Methods. 11: 413-6. PMID 24584194 DOI: 10.1038/Nmeth.2876 |
0.416 |
|
| 2014 |
Petrov AS, Bernier CR, Gulen B, Waterbury CC, Hershkovits E, Hsiao C, Harvey SC, Hud NV, Fox GE, Wartell RM, Williams LD. Secondary structures of rRNAs from all three domains of life. Plos One. 9: e88222. PMID 24505437 DOI: 10.1371/Journal.Pone.0088222 |
0.351 |
|
| 2013 |
Rivas M, Tran Q, Fox GE. Nanometer scale pores similar in size to the entrance of the ribosomal exit cavity are a common feature of large RNAs. Rna (New York, N.Y.). 19: 1349-54. PMID 23940386 DOI: 10.1261/Rna.038828.113 |
0.433 |
|
| 2013 |
Tirumalai MR, Fox GE. An ICEBs1-like element may be associated with the extreme radiation and desiccation resistance of Bacillus pumilus SAFR-032 spores. Extremophiles : Life Under Extreme Conditions. 17: 767-74. PMID 23812891 DOI: 10.1007/S00792-013-0559-Z |
0.332 |
|
| 2013 |
Tirumalai MR, Rastogi R, Zamani N, O'Bryant Williams E, Allen S, Diouf F, Kwende S, Weinstock GM, Venkateswaran KJ, Fox GE. Candidate genes that may be responsible for the unusual resistances exhibited by Bacillus pumilus SAFR-032 spores. Plos One. 8: e66012. PMID 23799069 DOI: 10.1371/Journal.Pone.0066012 |
0.303 |
|
| 2013 |
Fox GE, Tran Q, Rivas M, Stepanov V. 3 Origins and evolution of the translation machinery Journal of Biomolecular Structure and Dynamics. 31: 2-2. DOI: 10.1080/07391102.2013.786329 |
0.339 |
|
| 2012 |
Zhao Q, Huang HC, Nagaswamy U, Xia Y, Gao X, Fox GE. UNAC tetraloops: to what extent do they mimic GNRA tetraloops? Biopolymers. 97: 617-28. PMID 22605553 DOI: 10.1002/Bip.22049 |
0.806 |
|
| 2012 |
Gijavanekar C, Drabek R, Soni M, Jackson GW, Strych U, Fox GE, Fofanov Y, Willson RC. Detection and typing of viruses using broadly sensitive cocktail-PCR and mass spectrometric cataloging: demonstration with dengue virus. The Journal of Molecular Diagnostics : Jmd. 14: 402-7. PMID 22579629 DOI: 10.1016/J.Jmoldx.2012.02.006 |
0.315 |
|
| 2012 |
Fox GE, Tran Q, Yonath A. An exit cavity was crucial to the polymerase activity of the early ribosome. Astrobiology. 12: 57-60. PMID 22191510 DOI: 10.1089/Ast.2011.0692 |
0.374 |
|
| 2012 |
Dasgupta I, Gao X, Fox GE. Structural properties of DNA oligomers containing (GACX)(n) and (GAXC)(n) tandem repeats. Biopolymers. 97: 155-64. PMID 21953019 DOI: 10.1002/Bip.21719 |
0.316 |
|
| 2011 |
Lu Q, Fox GE. Resurrection of an ancestral 5S rRNA. Bmc Evolutionary Biology. 11: 218. PMID 21781330 DOI: 10.1186/1471-2148-11-218 |
0.44 |
|
| 2011 |
Nayar M, Fox GE. Defining 5S rRNA structure space: point mutation data can be used to predict the phenotype of multichange variants. Molecular Biology and Evolution. 28: 2629-36. PMID 21470967 DOI: 10.1093/Molbev/Msr090 |
0.783 |
|
| 2011 |
Gijavanekar C, Añez-Lingerfelt M, Feng C, Putonti C, Fox GE, Sabo A, Fofanov Y, Willson RC. PCR detection of nearly any dengue virus strain using a highly sensitive primer 'cocktail'. The Febs Journal. 278: 1676-87. PMID 21410643 DOI: 10.1111/J.1742-4658.2011.08091.X |
0.321 |
|
| 2011 |
Kanakaraj I, Jewell DL, Murphy JC, Fox GE, Willson RC. Removal of PCR error products and unincorporated primers by metal-chelate affinity chromatography. Plos One. 6: e14512. PMID 21264292 DOI: 10.1371/Journal.Pone.0014512 |
0.315 |
|
| 2011 |
Zhu D, Vaishampayan PA, Venkateswaran K, Fox GE. STITCH: algorithm to splice, trim, identify, track, and capture the uniqueness of 16S rRNAs sequence pairs using public or in-house database. Microbial Ecology. 61: 669-75. PMID 21113709 DOI: 10.1007/S00248-010-9779-2 |
0.385 |
|
| 2010 |
Liu Y, Stepanov VG, Strych U, Willson RC, Jackson GW, Fox GE. DNAzyme-mediated recovery of small recombinant RNAs from a 5S rRNA-derived chimera expressed in Escherichia coli. Bmc Biotechnology. 10: 85. PMID 21134283 DOI: 10.1186/1472-6750-10-85 |
0.461 |
|
| 2010 |
Fox GE. Origin and evolution of the ribosome. Cold Spring Harbor Perspectives in Biology. 2: a003483. PMID 20534711 DOI: 10.1101/Cshperspect.A003483 |
0.431 |
|
| 2010 |
Fox GE. Origins and early evolution of the translation machinery Proceedings of Spie - the International Society For Optical Engineering. 7819. DOI: 10.1117/12.863130 |
0.302 |
|
| 2009 |
Rastogi R, Wu M, Dasgupta I, Fox GE. Visualization of ribosomal RNA operon copy number distribution. Bmc Microbiology. 9: 208. PMID 19781086 DOI: 10.1186/1471-2180-9-208 |
0.372 |
|
| 2009 |
Wang J, Dasgupta I, Fox GE. Many nonuniversal archaeal ribosomal proteins are found in conserved gene clusters. Archaea (Vancouver, B.C.). 2: 241-51. PMID 19478915 DOI: 10.1155/2009/971494 |
0.556 |
|
| 2009 |
Yerrapragada S, Siefert JL, Fox GE. Horizontal gene transfer in cyanobacterial signature genes. Methods in Molecular Biology (Clifton, N.J.). 532: 339-66. PMID 19271195 DOI: 10.1007/978-1-60327-853-9_20 |
0.726 |
|
| 2009 |
Zhang X, Potty AS, Jackson GW, Stepanov V, Tang A, Liu Y, Kourentzi K, Strych U, Fox GE, Willson RC. Engineered 5S ribosomal RNAs displaying aptamers recognizing vascular endothelial growth factor and malachite green. Journal of Molecular Recognition : Jmr. 22: 154-61. PMID 19195013 DOI: 10.1002/Jmr.917 |
0.403 |
|
| 2009 |
Zhang ZD, Nayar M, Ammons D, Rampersad J, Fox GE. Rapid in vivo exploration of a 5S rRNA neutral network. Journal of Microbiological Methods. 76: 181-7. PMID 19041908 DOI: 10.1016/J.Mimet.2008.10.010 |
0.768 |
|
| 2009 |
Añez-Lingerfelt M, Fox GE, Willson RC. Reduction of DNA contamination in RNA samples for reverse transcription-polymerase chain reaction using selective precipitation by compaction agents. Analytical Biochemistry. 384: 79-85. PMID 18831957 DOI: 10.1016/J.Ab.2008.09.009 |
0.346 |
|
| 2008 |
Añez M, Putonti C, Fox GE, Fofanov Y, Willson RC. Exhaustive computational identification of pathogen sequences far-distant from background genomes: Identification and experimental verification of human-blind dengue PCR primers. Journal of Biotechnology. 133: 267-76. PMID 17996971 DOI: 10.1016/J.Jbiotec.2007.09.007 |
0.333 |
|
| 2007 |
Highlander SK, Hultén KG, Qin X, Jiang H, Yerrapragada S, Mason EO, Shang Y, Williams TM, Fortunov RM, Liu Y, Igboeli O, Petrosino J, Tirumalai M, Uzman A, Fox GE, et al. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. Bmc Microbiology. 7: 99. PMID 17986343 DOI: 10.1186/1471-2180-7-99 |
0.698 |
|
| 2007 |
Zhu D, Fox GE, Chakravarty S. RECOVIR: an application package to automatically identify some single stranded RNA viruses using capsid protein residues that uniquely distinguish among these viruses. Bmc Bioinformatics. 8: 379. PMID 17927830 DOI: 10.1186/1471-2105-8-379 |
0.37 |
|
| 2007 |
Gioia J, Yerrapragada S, Qin X, Jiang H, Igboeli OC, Muzny D, Dugan-Rocha S, Ding Y, Hawes A, Liu W, Perez L, Kovar C, Dinh H, Lee S, Nazareth L, ... ... Fox GE, et al. Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032. Plos One. 2: e928. PMID 17895969 DOI: 10.1371/Journal.Pone.0000928 |
0.702 |
|
| 2007 |
Karpathy SE, Qin X, Gioia J, Jiang H, Liu Y, Petrosino JF, Yerrapragada S, Fox GE, Haake SK, Weinstock GM, Highlander SK. Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium. Plos One. 2: e659. PMID 17668047 DOI: 10.1371/Journal.Pone.0000659 |
0.737 |
|
| 2007 |
Stepanov VG, Fox GE. Stress-driven in vivo selection of a functional mini-gene from a randomized DNA library expressing combinatorial peptides in Escherichia coli. Molecular Biology and Evolution. 24: 1480-91. PMID 17420171 DOI: 10.1093/Molbev/Msm067 |
0.315 |
|
| 2007 |
Jackson GW, McNichols RJ, Fox GE, Willson RC. Universal bacterial identification by mass spectrometry of 16S ribosomal RNA cleavage products International Journal of Mass Spectrometry. 261: 218-226. DOI: 10.1016/J.Ijms.2006.09.021 |
0.412 |
|
| 2006 |
Gioia J, Qin X, Jiang H, Clinkenbeard K, Lo R, Liu Y, Fox GE, Yerrapragada S, McLeod MP, McNeill TZ, Hemphill L, Sodergren E, Wang Q, Muzny DM, Homsi FJ, et al. The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny. Journal of Bacteriology. 188: 7257-66. PMID 17015664 DOI: 10.1128/Jb.00675-06 |
0.748 |
|
| 2006 |
Petrosino JF, Xiang Q, Karpathy SE, Jiang H, Yerrapragada S, Liu Y, Gioia J, Hemphill L, Gonzalez A, Raghavan TM, Uzman A, Fox GE, Highlander S, Reichard M, Morton RJ, et al. Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence. Journal of Bacteriology. 188: 6977-85. PMID 16980500 DOI: 10.1128/Jb.00506-06 |
0.734 |
|
| 2006 |
Hury J, Nagaswamy U, Larios-Sanz M, Fox GE. Ribosome origins: the relative age of 23S rRNA Domains. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 36: 421-9. PMID 16972151 DOI: 10.1007/S11084-006-9011-Z |
0.8 |
|
| 2006 |
Putonti C, Luo Y, Katili C, Chumakov S, Fox GE, Graur D, Fofanov Y. A computational tool for the genomic identification of regions of unusual compositional properties and its utilization in the detection of horizontally transferred sequences. Molecular Biology and Evolution. 23: 1863-8. PMID 16829541 DOI: 10.1093/Molbev/Msl053 |
0.352 |
|
| 2006 |
Jackson GW, McNichols RJ, Fox GE, Willson RC. Bacterial genotyping by 16S rRNA mass cataloging. Bmc Bioinformatics. 7: 321. PMID 16796754 DOI: 10.1186/1471-2105-7-321 |
0.381 |
|
| 2006 |
Zhang Z, Jackson GW, Fox GE, Willson RC. Microbial identification by mass cataloging. Bmc Bioinformatics. 7: 117. PMID 16524471 DOI: 10.1186/1471-2105-7-117 |
0.336 |
|
| 2006 |
Putonti C, Chumakov S, Mitra R, Fox GE, Willson RC, Fofanov Y. Human-blind probes and primers for dengue virus identification. The Febs Journal. 273: 398-408. PMID 16403026 DOI: 10.1111/J.1742-4658.2005.05074.X |
0.335 |
|
| 2006 |
Zhu D, Fofanov Y, Willson RC, Fox GE. A parallel computing algorithm for 16S rRNA probe design Journal of Parallel and Distributed Computing. 66: 1546-1551. DOI: 10.1016/J.Jpdc.2006.03.002 |
0.305 |
|
| 2005 |
Tucker DL, Karouia F, Wang J, Luo Y, Li TB, Willson RC, Fofanov Y, Fox GE. Effect of an artificial RNA marker on gene expression in Escherichia coli. Applied and Environmental Microbiology. 71: 4156-9. PMID 16000839 DOI: 10.1128/Aem.71.7.4156-4159.2005 |
0.398 |
|
| 2005 |
Zhao Q, Nagaswamy U, Lee H, Xia Y, Huang HC, Gao X, Fox GE. NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit. Nucleic Acids Research. 33: 3145-53. PMID 15939932 DOI: 10.1093/Nar/Gki621 |
0.781 |
|
| 2005 |
Huang HC, Nagaswamy U, Fox GE. The application of cluster analysis in the intercomparison of loop structures in RNA. Rna (New York, N.Y.). 11: 412-23. PMID 15769871 DOI: 10.1261/Rna.7104605 |
0.8 |
|
| 2005 |
Forsman ZH, Guzman HM, Chen CA, Fox GE, Wellington GM. An ITS region phylogeny of Siderastrea (Cnidaria: Anthozoa): Is S. glynni endangered or introduced? Coral Reefs. 24: 343-347. DOI: 10.1007/S00338-005-0497-Z |
0.335 |
|
| 2004 |
Forsman ZH, Lednicky JA, Fox GE, Willson RC, White ZS, Halvorson SJ, Wong C, Lewis AM, Butel JS. Phylogenetic analysis of polyomavirus simian virus 40 from monkeys and humans reveals genetic variation. Journal of Virology. 78: 9306-16. PMID 15308725 DOI: 10.1128/Jvi.78.17.9306-9316.2004 |
0.323 |
|
| 2003 |
Martin KA, Siefert JL, Yerrapragada S, Lu Y, McNeill TZ, Moreno PA, Weinstock GM, Widger WR, Fox GE. Cyanobacterial signature genes. Photosynthesis Research. 75: 211-21. PMID 16228602 DOI: 10.1023/A:1023990402346 |
0.764 |
|
| 2003 |
Nagaswamy U, Fox GE. RNA ligation and the origin of tRNA. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 33: 199-209. PMID 12967267 DOI: 10.1023/A:1024658727570 |
0.816 |
|
| 2003 |
Balan S, Murphy J, Galaev I, Kumar A, Fox GE, Mattiasson B, Willson RC. Metal chelate affinity precipitation of RNA and purification of plasmid DNA. Biotechnology Letters. 25: 1111-6. PMID 12889823 DOI: 10.1023/A:1024148316322 |
0.359 |
|
| 2003 |
Murphy JC, Jewell DL, White KI, Fox GE, Willson RC. Nucleic acid separations utilizing immobilized metal affinity chromatography. Biotechnology Progress. 19: 982-6. PMID 12790665 DOI: 10.1021/Bp025563O |
0.336 |
|
| 2003 |
D'Souza LM, Larios-Sanz M, Setterquist RA, Willson RC, Fox GE. Small RNA sequences are readily stabilized by inclusion in a carrier rRNA. Biotechnology Progress. 19: 734-8. PMID 12790632 DOI: 10.1021/Bp025755J |
0.461 |
|
| 2003 |
DeWalt BW, Murphy JC, Fox GE, Willson RC. Compaction agent clarification of microbial lysates. Protein Expression and Purification. 28: 220-3. PMID 12699684 DOI: 10.1016/S1046-5928(02)00677-0 |
0.307 |
|
| 2003 |
Zhang Z, D'Souza LM, Lee YH, Fox GE. Common 5S rRNA variants are likely to be accepted in many sequence contexts. Journal of Molecular Evolution. 56: 69-76. PMID 12569424 DOI: 10.1007/S00239-002-2381-6 |
0.466 |
|
| 2002 |
Nagaswamy U, Fox GE. Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs. Rna (New York, N.Y.). 8: 1112-9. PMID 12358430 DOI: 10.1017/S135583820202006X |
0.808 |
|
| 2002 |
Larkin DC, Williams AM, Martinis SA, Fox GE. Identification of essential domains for Escherichia coli tRNA(leu) aminoacylation and amino acid editing using minimalist RNA molecules. Nucleic Acids Research. 30: 2103-13. PMID 12000830 DOI: 10.1093/Nar/30.10.2103 |
0.779 |
|
| 2002 |
Kourentzi KD, Fox GE, Willson RC. Microbial identification by immunohybridization assay of artificial RNA labels. Journal of Microbiological Methods. 49: 301-6. PMID 11869795 DOI: 10.1016/S0167-7012(02)00006-4 |
0.419 |
|
| 2002 |
Zhang Z, Willson RC, Fox GE. Identification of characteristic oligonucleotides in the bacterial 16S ribosomal RNA sequence dataset. Bioinformatics (Oxford, England). 18: 244-50. PMID 11847072 DOI: 10.1093/Bioinformatics/18.2.244 |
0.422 |
|
| 2002 |
Nagaswamy U, Larios-Sanz M, Hury J, Collins S, Zhang Z, Zhao Q, Fox GE. NCIR: a database of non-canonical interactions in known RNA structures. Nucleic Acids Research. 30: 395-7. PMID 11752347 DOI: 10.1093/Nar/30.1.395 |
0.802 |
|
| 2002 |
Fox GE, Hury J, Nagaswamy U, Wang J, Naik AK. Origins of the protein synthesis machinery: A genomics and structural perspective Proceedings of Spie - the International Society For Optical Engineering. 4859: 145-153. DOI: 10.1117/12.457570 |
0.789 |
|
| 2002 |
Starikov D, Boney C, Medelci N, Um JW, Bensaoula A, Larios Sanz M, Fox GE. Experimental simulation of integrated optoelectronic sensors based on III nitrides Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 20: 1815-1820. DOI: 10.1116/1.1498276 |
0.703 |
|
| 2001 |
Nagaswamy U, Gao X, Martinis SA, Fox GE. NMR structure of a ribosomal RNA hairpin containing a conserved CUCAA pentaloop. Nucleic Acids Research. 29: 5129-39. PMID 11812846 DOI: 10.1093/Nar/29.24.5129 |
0.809 |
|
| 2001 |
Larkin DC, Martinis SA, Roberts DJ, Fox GE. Ala-His mediated peptide bond formation revisited. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 31: 511-26. PMID 11770259 DOI: 10.1023/A:1012770720410 |
0.783 |
|
| 2001 |
Kourentzi KD, Fox GE, Willson RC. Microbial detection with low molecular weight RNA. Current Microbiology. 43: 444-7. PMID 11685514 DOI: 10.1007/S002840010336 |
0.393 |
|
| 2001 |
Murphy JC, Fox GE, Willson RC. RNA isolation and fractionation with compaction agents. Analytical Biochemistry. 295: 143-8. PMID 11488615 DOI: 10.1006/Abio.2001.5180 |
0.419 |
|
| 2000 |
Hedenstierna KO, Siefert JL, Fox GE, Murgola EJ. Co-conservation of rRNA tetraloop sequences and helix length suggests involvement of the tetraloops in higher-order interactions. Biochimie. 82: 221-7. PMID 10863005 DOI: 10.1016/S0300-9084(00)00212-1 |
0.419 |
|
| 2000 |
D'Souza LM, Willson RC, Fox GE. Expression of marker RNAs in Pseudomonas putida. Current Microbiology. 40: 91-5. PMID 10594220 DOI: 10.1007/S002849910017 |
0.426 |
|
| 2000 |
Nagaswamy U, Voss N, Zhang Z, Fox GE. Database of non-canonical base pairs found in known RNA structures. Nucleic Acids Research. 28: 375-6. PMID 10592279 DOI: 10.1093/Nar/28.1.375 |
0.782 |
|
| 1999 |
Ammons D, Rampersad J, Fox GE. 5S rRNA gene deletions cause an unexpectedly high fitness loss in Escherichia coli. Nucleic Acids Research. 27: 637-42. PMID 9862991 DOI: 10.1093/Nar/27.2.637 |
0.37 |
|
| 1998 |
Siefert JL, Fox GE. Phylogenetic mapping of bacterial morphology. Microbiology (Reading, England). 144: 2803-8. PMID 9802021 DOI: 10.1099/00221287-144-10-2803 |
0.345 |
|
| 1998 |
Ammons D, Rampersad J, Fox GE. A genomically modified marker strain of Escherichia coli. Current Microbiology. 37: 341-6. PMID 9767715 DOI: 10.1007/S002849900389 |
0.315 |
|
| 1997 |
Pitulle C, Dsouza L, Fox GE. A low molecular weight artificial RNA of unique size with multiple probe target regions. Systematic and Applied Microbiology. 20: 133-6. PMID 11540055 DOI: 10.1016/S0723-2020(97)80057-4 |
0.413 |
|
| 1997 |
Siefert JL, Martin KA, Abdi F, Widger WR, Fox GE. Conserved gene clusters in bacterial genomes provide further support for the primacy of RNA. Journal of Molecular Evolution. 45: 467-72. PMID 9342394 DOI: 10.1007/Pl00006251 |
0.623 |
|
| 1997 |
Lee YH, DSouza LM, Fox GE. Equally parsimonious pathways through an RNA sequence space are not equally likely. Journal of Molecular Evolution. 45: 278-84. PMID 9302322 DOI: 10.1007/Pl00006231 |
0.441 |
|
| 1996 |
Yang Y, Fox GE. An Archaea 5S rRNA analog is stably expressed in Escherichia coli. Gene. 168: 81-5. PMID 8626070 DOI: 10.1016/0378-1119(95)00683-4 |
0.46 |
|
| 1996 |
Fox GE, Martin KA, Widger WR, Abdi F, Siefert JL. Bacterial operons containing components of the translation machinery are of great antiquity Origins of Life and Evolution of the Biosphere. 26: 493-493. DOI: 10.1007/Bf02459889 |
0.556 |
|
| 1996 |
Siefert JL, Fox GE. The melding of morphology and molecular phylogeny: Insight into ancestral prokaryotic phenotypes Origins of Life and Evolution of the Biosphere. 26: 290-290. DOI: 10.1007/Bf02459764 |
0.323 |
|
| 1995 |
Pitulle C, Hedenstierna KO, Fox GE. A novel approach for monitoring genetically engineered microorganisms by using artificial, stable RNAs. Applied and Environmental Microbiology. 61: 3661-6. PMID 7487004 DOI: 10.1128/Aem.61.10.3661-3666.1995 |
0.473 |
|
| 1994 |
Pitulle C, Yang Y, Marchiani M, Moore ER, Siefert JL, Aragno M, Jurtshuk P, Fox GE. Phylogenetic position of the genus Hydrogenobacter. International Journal of Systematic Bacteriology. 44: 620-6. PMID 7981093 DOI: 10.1099/00207713-44-4-620 |
0.332 |
|
| 1993 |
Hedenstierna KO, Lee YH, Yang Y, Fox GE. A prototype stable RNA identification cassette for monitoring plasmids of genetically engineered microorganisms. Systematic and Applied Microbiology. 16: 280-6. PMID 11539559 DOI: 10.1016/S0723-2020(11)80481-9 |
0.436 |
|
| 1993 |
Lee YH, Dsouza L, Fox GE. Experimental investigation of an RNA sequence space. Origins of Life and Evolution of the Biosphere : the Journal of the International Society For the Study of the Origin of Life. 23: 365-72. PMID 7509477 DOI: 10.1007/Bf01582086 |
0.448 |
|
| 1992 |
Lee YH, Huang XY, Hirsh D, Fox GE, Hecht RM. Conservation of gene organization and trans-splicing in the glyceraldehyde-3-phosphate dehydrogenase-encoding genes of Caenorhabditis briggsae. Gene. 121: 227-35. PMID 1446820 DOI: 10.1016/0378-1119(92)90126-A |
0.364 |
|
| 1992 |
Wisotzkey JD, Jurtshuk P, Fox GE, Deinhard G, Poralla K. Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. International Journal of Systematic Bacteriology. 42: 263-9. PMID 1374624 DOI: 10.1099/00207713-42-2-263 |
0.332 |
|
| 1992 |
Fox GE, Wisotzkey JD, Jurtshuk P. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. International Journal of Systematic Bacteriology. 42: 166-70. PMID 1371061 DOI: 10.1099/00207713-42-1-166 |
0.355 |
|
| 1992 |
Lazcano A, Valverde V, Hernández G, Gariglio P, Fox GE, Oró J. On the early emergence of reverse transcription: theoretical basis and experimental evidence. Journal of Molecular Evolution. 35: 524-36. PMID 1282161 DOI: 10.1007/Bf00160213 |
0.382 |
|
| 1991 |
Hadwiger MA, Fox GE. Explicit distance geometry: identification of all the degrees of freedom in a large RNA molecule. Journal of Biomolecular Structure & Dynamics. 8: 759-79. PMID 1711857 DOI: 10.1080/07391102.1991.10507843 |
0.373 |
|
| 1990 |
Wisotzkey JD, Jurtshuk P, Fox GE. PCR amplification of 16S rDNA from lyophilized cell cultures facilitates studies in molecular systematics. Current Microbiology. 21: 325-7. PMID 11538071 DOI: 10.1007/Bf02092099 |
0.351 |
|
| 1990 |
Devereux R, Loeblich AR, Fox GE. Higher plant origins and the phylogeny of green algae. Journal of Molecular Evolution. 31: 18-24. PMID 2116527 DOI: 10.1007/Bf02101788 |
0.353 |
|
| 1989 |
Haselman T, Gutell RR, Jurka J, Fox GE. Additional Watson-Crick interactions suggest a structural core in large subunit ribosomal RNA. Journal of Biomolecular Structure & Dynamics. 7: 181-6. PMID 2684221 DOI: 10.1080/07391102.1989.10507759 |
0.415 |
|
| 1989 |
Hadwiger MA, Fox GE. Distances as degrees of freedom. Journal of Biomolecular Structure & Dynamics. 7: 749-71. PMID 2483316 DOI: 10.1080/07391102.1989.10508518 |
0.304 |
|
| 1989 |
Haselman T, Camp DG, Fox GE. Phylogenetic evidence for tertiary interactions in 16S-like ribosomal RNA. Nucleic Acids Research. 17: 2215-21. PMID 2468130 DOI: 10.1093/Nar/17.6.2215 |
0.413 |
|
| 1989 |
Lazcano A, Llaca V, Fox GE, Oró J. A classification of rna polymerases based on their evolutionary relatedness Origins of Life and Evolution of the Biosphere. 19: 407-408. DOI: 10.1007/Bf02388919 |
0.436 |
|
| 1988 |
Oren A, Lau PP, Fox GE. The taxonomic status of "Halobacterium marismortui" from the Dead Sea: a comparison with Halobacterium vallismortis. Systematic and Applied Microbiology. 10: 251-8. PMID 11538329 DOI: 10.1016/S0723-2020(88)80009-2 |
0.347 |
|
| 1988 |
Haselman T, Chappelear JE, Fox GE. Fidelity of secondary and tertiary interactions in tRNA. Nucleic Acids Research. 16: 5673-84. PMID 3387243 DOI: 10.1093/Nar/16.12.5673 |
0.35 |
|
| 1988 |
Gutell RR, Fox GE. A compilation of large subunit RNA sequences presented in a structural format. Nucleic Acids Research. 16: r175-269. PMID 3368328 DOI: 10.1093/Nar/16.Suppl.R175 |
0.456 |
|
| 1988 |
Fox GE, Stackebrandt E. 10 The Application of 16S rRNA Cataloguing and 5S rRNA Sequencing in Bacterial Systematics Methods in Microbiology. 19: 405-458. DOI: 10.1016/S0580-9517(08)70416-1 |
0.361 |
|
| 1987 |
Lau PP, DeBrunner-Vossbrinck B, Dunn B, Miotto K, MacDonnell MT, Rollins DM, Pillidge CJ, Hespell RB, Colwell RR, Sogin ML, Fox GE. Phylogenetic diversity and position of the genus Campylobacter. Systematic and Applied Microbiology. 9: 231-8. PMID 11542086 DOI: 10.1016/S0723-2020(87)80027-9 |
0.364 |
|
| 1987 |
Delihas N, Fox GE. Origins of the plant chloroplasts and mitochondria based on comparisons of 5S ribosomal RNAs Annals of the New York Academy of Sciences. 503: 92-102. PMID 11536580 DOI: 10.1111/J.1749-6632.1987.Tb40601.X |
0.457 |
|
| 1987 |
Stackebrandt E, Ludwig W, Weizenegger M, Dorn S, McGill TJ, Fox GE, Woese CR, Schubert W, Schleifer KH. Comparative 16S rRNA oligonucleotide analyses and murein types of round-spore-forming bacilli and non-spore-forming relatives. Journal of General Microbiology. 133: 2523-9. PMID 2452227 DOI: 10.1099/00221287-133-9-2523 |
0.516 |
|
| 1986 |
McGill TJ, Jurka J, Sobieski JM, Pickett MH, Woese CR, Fox GE. Characteristic archaebacterial 16S rRNA oligonucleotides. Systematic and Applied Microbiology. 7: 194-7. PMID 11542064 DOI: 10.1016/S0723-2020(86)80005-4 |
0.53 |
|
| 1985 |
Villanueva E, Luehrsen KR, Gibson J, Delihas N, Fox GE. Phylogenetic origins of the plant mitochondrion based on a comparative analysis of 5S ribosomal RNA sequences Journal of Molecular Evolution. 22: 46-52. PMID 11542018 DOI: 10.1007/Bf02105804 |
0.478 |
|
| 1985 |
Woese CR, Stackebrandt E, Macke TJ, Fox GE. A phylogenetic definition of the major eubacterial taxa. Systematic and Applied Microbiology. 6: 143-51. PMID 11542017 DOI: 10.1016/S0723-2020(85)80047-3 |
0.582 |
|
| 1985 |
Luehrsen KR, Nicholson DE, Fox GE. Widespread distribution of a 7S RNA in archaebacteria Current Microbiology. 12: 69-72. PMID 11540841 DOI: 10.1007/Bf01567394 |
0.437 |
|
| 1985 |
Daniels CJ, Hofman JD, MacWilliam JG, Doolittle WF, Woese CR, Luehrsen KR, Fox GE. Sequence of 5S ribosomal RNA gene regions and their products in the archaebacterium Halobacterium volcanii. Molecular & General Genetics : Mgg. 198: 270-4. PMID 3856725 DOI: 10.1007/Bf00383005 |
0.592 |
|
| 1985 |
Ludwig W, Seewaldt E, Kilpper-Bälz R, Schleifer KH, Magrum L, Woese CR, Fox GE, Stackebrandt E. The phylogenetic position of Streptococcus and Enterococcus. Journal of General Microbiology. 131: 543-51. PMID 2410543 DOI: 10.1099/00221287-131-3-543 |
0.551 |
|
| 1985 |
Stackebrandt E, Ludwig W, Fox GE. 3 16 S Ribosomal RNA Oligonucleotide Cataloguing Methods in Microbiology. 18: 75-107. DOI: 10.1016/S0580-9517(08)70472-0 |
0.457 |
|
| 1984 |
Woese CR, Stackebrandt E, Weisburg WG, Paster BJ, Madigan MT, Fowler VJ, Hahn CM, Blanz P, Gupta R, Nealson KH, Fox GE. The phylogeny of purple bacteria: the alpha subdivision. Systematic and Applied Microbiology. 5: 315-26. PMID 11541974 DOI: 10.1016/S0723-2020(84)80034-X |
0.486 |
|
| 1984 |
Deming JW, Hada H, Colwell RR, Luehrsen KR, Fox GE. The ribonucleotide sequence of 5S rRNA from two strains of deep-sea barophilic bacteria Journal of General Microbiology. 130: 1911-1920. PMID 6206199 DOI: 10.1099/00221287-130-8-1911 |
0.341 |
|
| 1983 |
Nicholson DE, Fox GE. Molecular evidence for a close phylogenetic relationship among box-shaped halophilic bacteria, Halobacterium vallismortis, and Halobacterium marismortui Canadian Journal of Microbiology. 29: 52-59. DOI: 10.1139/M83-009 |
0.353 |
|
| 1982 |
Fox GE, Luehrsen KR, Woese CR. Archaebacterial 5 S ribosomal RNA Zentralblatt Fur Bakteriologie.Allgemeine Angewandte Und Okologische Microbiologie Abt.1 Orig.C Hyg.. 3: 330-345. DOI: 10.1016/S0721-9571(82)80046-X |
0.609 |
|
| 1982 |
Tanner RS, Stackebrandt E, Fox GE, Gupta R, Magrum LJ, Woese CR. A phylogenetic analysis of anaerobic eubacteria capable of synthesizing acetate from carbon dioxide Current Microbiology. 7: 127-132. DOI: 10.1007/Bf01568961 |
0.534 |
|
| 1981 |
Butler MH, Wall SM, Luehrsen KR, Fox GE, Hecht RM. Molecular relationships between closely related strains and species of nematodes Journal of Molecular Evolution. 18: 18-23. PMID 7334524 DOI: 10.1007/Bf01733207 |
0.304 |
|
| 1981 |
Luehrsen KR, Fox GE, Kilpatrick MW, Walker RT, Domdey H, Krupp G, Gross HJ. The nucleotide sequence of the 5S rRNA from the archaebacterium thermoplasma acidophilum Nucleic Acids Research. 9: 965-970. PMID 7232209 DOI: 10.1093/Nar/9.4.965 |
0.43 |
|
| 1981 |
Luehrsen KR, Fox GE. Secondary structure of eukaryotic cytoplasmic 5S ribosomal RNA Proceedings of the National Academy of Sciences of the United States of America. 78: 2150-2154. PMID 6787600 DOI: 10.1073/Pnas.78.4.2150 |
0.388 |
|
| 1981 |
Ludwig W, Schleifer KH, Fox GE, Seewaldt E, Stackebrandt E. A phylogenetic analysis of Staphylococci, Peptococcus saccharolyticus and Micrococcus mucilaginosus Journal of General Microbiology. 125: 357-366. PMID 6172548 DOI: 10.1099/00221287-125-2-357 |
0.325 |
|
| 1981 |
Luehrsen KR, Nicholson DE, Eubanks DC, Fox GE. An archaebacterial 5S rRNA contains a long insertion sequence Nature. 293: 755-756. PMID 6169998 DOI: 10.1038/293755A0 |
0.447 |
|
| 1981 |
Tanner RS, Stackebrandt E, Fox GE, Woese CR. A phylogenetic analysis of Acetobacterium woodii, Clostridium barkeri, Clostridium butyricum, Clostridium lituseburense, Uubacterium limosum, and Eubacterium tenue Current Microbiology. 5: 35-38. DOI: 10.1007/Bf01566595 |
0.589 |
|
| 1980 |
Fox GE, Stackebrandt E, Hespell RB, Gibson J, Maniloff J, Dyer TA, Wolfe RS, Balch WE, Tanner RS, Magrum LJ, Zablen LB, Blakemore R, Gupta R, Bonen L, Lewis BJ, et al. The phylogeny of prokaryotes. Science (New York, N.Y.). 209: 457-63. PMID 6771870 DOI: 10.1126/Science.6771870 |
0.526 |
|
| 1980 |
Woese CR, Gibson J, Fox GE. Do genealogical patterns in purple photosynthetic bacteria reflect interspecific gene transfer? Nature. 283: 212-4. PMID 6243180 DOI: 10.1038/283212A0 |
0.566 |
|
| 1980 |
BROOKS BW, MURRAY RGE, JOHNSON JL, STACKEBRANDT E, WOESE CR, FOX GE. Red-Pigmented Micrococci: A Basis for Taxonomy International Journal of Systematic Bacteriology. 30: 627-646. DOI: 10.1099/00207713-30-4-627 |
0.509 |
|
| 1980 |
Luehrsen KR, Fox GE, Woese CR. The sequence of Tetrahymena thermophila 5S ribosomal ribonucleic acid Current Microbiology: An International Journal. 4: 123-126. DOI: 10.1007/Bf02602905 |
0.589 |
|
| 1979 |
Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS. Methanogens: reevaluation of a unique biological group. Microbiological Reviews. 43: 260-96. PMID 390357 |
0.408 |
|
| 1979 |
Bonen L, Doolittle WF, Fox GE. Cyanobacterial evolution: results of 16S ribosomal ribonucleic acid sequence analyses Canadian Journal of Biochemistry. 57: 879-888. PMID 113061 |
0.345 |
|
| 1979 |
Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS. Methanogens: reevaluation of a unique biological group. Microbiological Reviews. 43: 260-296. DOI: 10.1128/Mmbr.43.2.260-296.1979 |
0.472 |
|
| 1978 |
Woese CR, Magrum LJ, Fox GE. Archaebacteria. Journal of Molecular Evolution. 11: 245-51. PMID 691075 DOI: 10.1007/BF01734485 |
0.517 |
|
| 1978 |
Woese CR, Fox GE. Methanogenic bacteria Nature. 273: 101. DOI: 10.1038/273101a0 |
0.428 |
|
| 1977 |
Fox GE, Magrum LJ, Balch WE, Wolfe RS, Woese CR. Classification of methanogenic bacteria by 16S ribosomal RNA characterization. Proceedings of the National Academy of Sciences of the United States of America. 74: 4537-41. PMID 16592452 DOI: 10.1073/Pnas.74.10.4537 |
0.62 |
|
| 1977 |
Woese CR, Fox GE. The concept of cellular evolution. Journal of Molecular Evolution. 10: 1-6. PMID 903983 DOI: 10.1007/Bf01796132 |
0.489 |
|
| 1977 |
Balch WE, Magrum LJ, Fox GE, Wolfe RS, Woese CR. An ancient divergence among the bacteria. Journal of Molecular Evolution. 9: 305-11. PMID 408502 DOI: 10.1007/Bf01796092 |
0.567 |
|
| 1977 |
Woese CR, Fox GE. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proceedings of the National Academy of Sciences of the United States of America. 74: 5088-90. PMID 270744 DOI: 10.1073/Pnas.74.11.5088 |
0.613 |
|
| 1977 |
Fox GE, Pechman KR, Woese CR. Comparative cataloging of 16S ribosomal ribonucleic acid: molecular approach to procaryotic systematics International Journal of Systematic Bacteriology. 27: 44-57. |
0.439 |
|
| 1976 |
Pribula CD, Fox GE, Woese CR. Nucleotide sequence of Clostridium pasteurianum 5S rRNA. Febs Letters. 64: 350-2. PMID 1278390 DOI: 10.1016/0014-5793(76)80326-2 |
0.572 |
|
| 1976 |
Woese CR, Luehrsen KR, Pribula CD, Fox GE. Sequence characterization of 5S ribosomal RNA from eight gram positive procaryotes. Journal of Molecular Evolution. 8: 143-53. PMID 823342 DOI: 10.1007/Bf01739100 |
0.594 |
|
| 1975 |
Fox GE, Woese CR. The architecture of 5S rRNA and its relation to function. Journal of Molecular Evolution. 6: 61-76. PMID 1185796 DOI: 10.1007/Bf01732674 |
0.613 |
|
| 1975 |
Woese CR, Pribula CD, Fox GE, Zablen LB. The nucleotide sequence of the 5S ribosomal RNA from a photobacterium. Journal of Molecular Evolution. 5: 35-46. PMID 1177325 DOI: 10.1007/Bf01732012 |
0.653 |
|
| 1975 |
Woese CR, Fox GE, Zablen L, Uchida T, Bonen L, Pechman K, Lewis BJ, Stahl D. Conservation of primary structure in 16S ribosomal RNA. Nature. 254: 83-6. PMID 1089909 DOI: 10.1038/254083A0 |
0.626 |
|
| 1975 |
Fox GE, Woese CR. 5S RNA secondary structure. Nature. 256: 505-7. PMID 808733 DOI: 10.1038/256505A0 |
0.622 |
|
| 1974 |
Pribula CD, Fox GE, Woese CR. Nucleotide sequence of Bacillus megaterium 5 S RNA. Febs Letters. 44: 322-3. PMID 4213268 DOI: 10.1016/0014-5793(74)81168-3 |
0.634 |
|
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