Bradford W. Gibson - Publications

Affiliations: 
2006 University of California, San Francisco, San Francisco, CA 

197 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Meyer JG, Garcia TY, Schilling B, Gibson BW, Lamba DA. Proteome and Secretome Dynamics of Human Retinal Pigment Epithelium in Response to Reactive Oxygen Species. Scientific Reports. 9: 15440. PMID 31659173 DOI: 10.1038/s41598-019-51777-7  0.36
2019 Softic S, Meyer JG, Wang GX, Gupta MK, Batista TM, Lauritzen HPMM, Fujisaka S, Serra D, Herrero L, Willoughby J, Fitzgerald K, Ilkayeva O, Newgard CB, Gibson BW, Schilling B, et al. Dietary Sugars Alter Hepatic Fatty Acid Oxidation via Transcriptional and Post-translational Modifications of Mitochondrial Proteins. Cell Metabolism. 30: 735-753.e4. PMID 31577934 DOI: 10.1016/j.cmet.2019.09.003  0.36
2019 Wiley CD, Liu S, Limbad C, Zawadzka AM, Beck J, Demaria M, Artwood R, Alimirah F, Lopez-Dominguez JA, Kuehnemann C, Danielson SR, Basisty N, Kasler HG, Oron TR, Desprez PY, ... ... Gibson BW, et al. SILAC Analysis Reveals Increased Secretion of Hemostasis-Related Factors by Senescent Cells. Cell Reports. 28: 3329-3337.e5. PMID 31553904 DOI: 10.1016/j.celrep.2019.08.049  0.4
2019 Wang L, Davis SS, Borch Jensen M, Rodriguez-Fernandez IA, Apaydin C, Juhasz G, Gibson BW, Schilling B, Ramanathan A, Ghaemmaghami S, Jasper H. JNK modifies neuronal metabolism to promote proteostasis and longevity. Aging Cell. e12849. PMID 30810280 DOI: 10.1111/acel.12849  0.36
2018 Meyer JG, Softic S, Basisty N, Rardin MJ, Verdin E, Gibson BW, Ilkayeva O, Newgard CB, Kahn CR, Schilling B. Temporal dynamics of liver mitochondrial protein acetylation and succinylation and metabolites due to high fat diet and/or excess glucose or fructose. Plos One. 13: e0208973. PMID 30586434 DOI: 10.1371/journal.pone.0208973  0.48
2018 Basisty N, Meyer JG, Wei L, Gibson BW, Schilling B. Simultaneous Quantification of the Acetylome and Succinylome by 'One-Pot' Affinity Enrichment. Proteomics. e1800123. PMID 30035354 DOI: 10.1002/pmic.201800123  0.36
2017 Davis R, Écija-Conesa A, Gallego-Jara J, de Diego T, Filippova EV, Kuffel G, Anderson WF, Gibson BW, Schilling B, Canovas M, Wolfe AJ. An acetylatable lysine controls CRP function in E. coli. Molecular Microbiology. PMID 29105190 DOI: 10.1111/mmi.13874  0.36
2017 Post DMB, Slütter B, Schilling B, Chande AT, Rasmussen JA, Jones BD, D'Souza AK, Reinders LM, Harty JT, Gibson BW, Apicella MA. Characterization of Inner and Outer Membrane Proteins from Francisella tularensis Strains LVS and Schu S4 and Identification of Potential Subunit Vaccine Candidates. Mbio. 8. PMID 29018123 DOI: 10.1128/mBio.01592-17  0.36
2017 Collins BC, Hunter CL, Liu Y, Schilling B, Rosenberger G, Bader SL, Chan DW, Gibson BW, Gingras AC, Held JM, Hirayama-Kurogi M, Hou G, Krisp C, Larsen B, Lin L, et al. Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry. Nature Communications. 8: 291. PMID 28827567 DOI: 10.1038/s41467-017-00249-5  0.96
2017 Meyer JG, Mukkamalla S, Steen H, Nesvizhskii AI, Gibson BW, Schilling B. PIQED: automated identification and quantification of protein modifications from DIA-MS data. Nature Methods. 14: 646-647. PMID 28661500 DOI: 10.1038/nmeth.4334  0.36
2017 Post DMB, Schilling B, Reinders LM, D'Souza AK, Ketterer MR, Kiel SJ, Chande AT, Apicella MA, Gibson BW. Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae. Plos One. 12: e0179621. PMID 28654654 DOI: 10.1371/journal.pone.0179621  0.36
2017 Zhang Y, Bharathi SS, Rardin MJ, Lu J, Maringer KV, Sims-Lucas S, Prochownik EV, Gibson BW, Goetzman ES. SIRT5 Binds to Cardiolipin and Regulates the Electron Transport Chain. The Journal of Biological Chemistry. PMID 28458255 DOI: 10.1074/jbc.M117.785022  0.48
2017 Schilling B, Gibson BW, Hunter CL. Generation of High-Quality SWATH(®) Acquisition Data for Label-free Quantitative Proteomics Studies Using TripleTOF(®) Mass Spectrometers. Methods in Molecular Biology (Clifton, N.J.). 1550: 223-233. PMID 28188533 DOI: 10.1007/978-1-4939-6747-6_16  0.36
2016 Mark KA, Dumas KJ, Bhaumik D, Schilling B, Davis S, Oron TR, Sorensen DJ, Lucanic M, Brem RB, Melov S, Ramanathan A, Gibson BW, Lithgow GJ. Vitamin D Promotes Protein Homeostasis and Longevity via the Stress Response Pathway Genes skn-1, ire-1, and xbp-1. Cell Reports. 17: 1227-1237. PMID 27783938 DOI: 10.1016/j.celrep.2016.09.086  0.4
2016 Meyer JG, D'Souza AK, Sorensen DJ, Rardin MJ, Wolfe AJ, Gibson BW, Schilling B. Quantification of Lysine Acetylation and Succinylation Stoichiometry in Proteins Using Mass Spectrometric Data-Independent Acquisitions (SWATH). Journal of the American Society For Mass Spectrometry. PMID 27590315 DOI: 10.1007/s13361-016-1476-z  0.48
2016 Bullard SA, Seo S, Schilling B, Dyle MC, Dierdorff JM, Ebert SM, DeLau AD, Gibson BW, Adams CM. Gadd45a Promotes Skeletal Muscle Atrophy by Forming a Complex with the Protein Kinase MEKK4. The Journal of Biological Chemistry. PMID 27358404 DOI: 10.1074/jbc.M116.740308  0.36
2016 Post DM, Ketterer MR, Coffin JE, Reinders LM, Munson RS, Bair T, Murphy TF, Foster ED, Gibson BW, Apicella MA. Comparative analyses of the lipooligosaccharides from nontypeable Haemophilus influenzae and Haemophilus haemolyticus show differences in sialic acid and phosphorylcholine modifications. Infection and Immunity. PMID 26729761 DOI: 10.1128/IAI.01185-15  0.32
2015 Schilling B, MacLean B, Held JM, Sahu AK, Rardin MJ, Sorensen DJ, Peters T, Wolfe AJ, Hunter CL, MacCoss MJ, Gibson BW. Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows. Analytical Chemistry. PMID 26398777 DOI: 10.1021/acs.analchem.5b02983  0.96
2015 Min SW, Chen X, Tracy TE, Li Y, Zhou Y, Wang C, Shirakawa K, Minami SS, Defensor E, Mok SA, Sohn PD, Schilling B, Cong X, Ellerby L, Gibson BW, et al. Critical role of acetylation in tau-mediated neurodegeneration and cognitive deficits. Nature Medicine. PMID 26390242 DOI: 10.1038/nm.3951  0.36
2015 Schilling B, Christensen D, Davis R, Sahu AK, Hu LI, Walker-Peddakotla A, Sorensen DJ, Zemaitaitis B, Gibson BW, Wolfe AJ. Protein acetylation dynamics in response to carbon overflow in Escherichia coli. Molecular Microbiology. PMID 26264774 DOI: 10.1111/mmi.13161  0.36
2015 Nishida Y, Rardin MJ, Carrico C, He W, Sahu AK, Gut P, Najjar R, Fitch M, Hellerstein M, Gibson BW, Verdin E. SIRT5 Regulates both Cytosolic and Mitochondrial Protein Malonylation with Glycolysis as a Major Target. Molecular Cell. PMID 26073543 DOI: 10.1016/j.molcel.2015.05.022  0.96
2015 O'Brien R, DeGiacomo F, Holcomb J, Bonner A, Ring KL, Zhang N, Zafar K, Weiss A, Lager B, Schilling B, Gibson BW, Chen S, Kwak S, Ellerby LM. Integration Independent Transgenic Huntington's Disease Fragment Mouse Models Reveal Distinct Phenotypes and Lifespan In Vivo. The Journal of Biological Chemistry. PMID 26025364 DOI: 10.1074/jbc.M114.623561  0.36
2015 Lim HW, Kang SG, Ryu JK, Schilling B, Fei M, Lee IS, Kehasse A, Shirakawa K, Yokoyama M, Schnölzer M, Kasler HG, Kwon HS, Gibson BW, Sato H, Akassoglou K, et al. SIRT1 deacetylates RORγt and enhances Th17 cell generation. The Journal of Experimental Medicine. 212: 973. PMID 25987725 DOI: 10.1084/jem.2013237805062015c  0.36
2015 Rardin MJ, Schilling B, Cheng LY, MacLean BX, Sorenson DJ, Sahu AK, MacCoss MJ, Vitek O, Gibson BW. MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments. Molecular & Cellular Proteomics : McP. PMID 25987414 DOI: 10.1074/mcp.O115.048181  0.96
2015 Lim HW, Kang SG, Ryu JK, Schilling B, Fei M, Lee IS, Kehasse A, Shirakawa K, Yokoyama M, Schnölzer M, Kasler HG, Kwon HS, Gibson BW, Sato H, Akassoglou K, et al. SIRT1 deacetylates RORγt and enhances Th17 cell generation. The Journal of Experimental Medicine. 212: 607-17. PMID 25918343 DOI: 10.1084/jem.20132378  0.36
2015 Zhang Y, Bharathi SS, Rardin MJ, Uppala R, Verdin E, Gibson BW, Goetzman ES. SIRT3 and SIRT5 regulate the enzyme activity and cardiolipin binding of very long-chain acyl-CoA dehydrogenase. Plos One. 10: e0122297. PMID 25811481 DOI: 10.1371/journal.pone.0122297  0.96
2015 Abbatiello SE, Schilling B, Mani DR, Zimmerman LJ, Hall SC, MacLean B, Albertolle M, Allen S, Burgess M, Cusack MP, Ghosh M, Hedrick V, Held JM, Inerowicz HD, Jackson A, ... ... Gibson BW, et al. Large-scale inter-laboratory study to develop, analytically validate and apply highly multiplexed, quantitative peptide assays to measure cancer-relevant proteins in plasma. Molecular & Cellular Proteomics : McP. PMID 25693799 DOI: 10.1074/mcp.M114.047050  0.96
2015 AbouElfetouh A, Kuhn ML, Hu LI, Scholle MD, Sorensen DJ, Sahu AK, Becher D, Antelmann H, Mrksich M, Anderson WF, Gibson BW, Schilling B, Wolfe AJ. The E. coli sirtuin CobB shows no preference for enzymatic and nonenzymatic lysine acetylation substrate sites. Microbiologyopen. 4: 66-83. PMID 25417765 DOI: 10.1002/mbo3.223  0.96
2015 French WR, Zimmerman LJ, Schilling B, Gibson BW, Miller CA, Townsend RR, Sherrod SD, Goodwin CR, McLean JA, Tabb DL. Wavelet-based peak detection and a new charge inference procedure for MS/MS implemented in ProteoWizard's msConvert. Journal of Proteome Research. 14: 1299-307. PMID 25411686 DOI: 10.1021/pr500886y  0.36
2014 Klang IM, Schilling B, Sorensen DJ, Sahu AK, Kapahi P, Andersen JK, Swoboda P, Killilea DW, Gibson BW, Lithgow GJ. Iron promotes protein insolubility and aging in C. elegans. Aging. 6: 975-91. PMID 25554795  0.96
2014 Post DM, Held JM, Ketterer MR, Phillips NJ, Sahu A, Apicella MA, Gibson BW. Comparative analyses of proteins from Haemophilus influenzae biofilm and planktonic populations using metabolic labeling and mass spectrometry. Bmc Microbiology. 14: 329. PMID 25551439 DOI: 10.1186/s12866-014-0329-9  0.96
2014 Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B, Gibson BW, Colangelo CM, Paulovich AG, Carr SA, Jaffe JD, et al. Panorama: a targeted proteomics knowledge base. Journal of Proteome Research. 13: 4205-10. PMID 25102069 DOI: 10.1021/pr5006636  0.96
2014 Wilson-Edell KA, Kehasse A, Scott GK, Yau C, Rothschild DE, Schilling B, Gabriel BS, Yevtushenko MA, Hanson IM, Held JM, Gibson BW, Benz CC. RPL24: a potential therapeutic target whose depletion or acetylation inhibits polysome assembly and cancer cell growth. Oncotarget. 5: 5165-76. PMID 24970821  0.96
2014 Zawadzka AM, Schilling B, Held JM, Sahu AK, Cusack MP, Drake PM, Fisher SJ, Gibson BW. Variation and quantification among a target set of phosphopeptides in human plasma by multiple reaction monitoring and SWATH-MS2 data-independent acquisition. Electrophoresis. 35: 3487-97. PMID 24853916 DOI: 10.1002/elps.201400167  0.96
2014 Broudy D, Killeen T, Choi M, Shulman N, Mani DR, Abbatiello SE, Mani D, Ahmad R, Sahu AK, Schilling B, Tamura K, Boss Y, Sharma V, Gibson BW, Carr SA, et al. A framework for installable external tools in Skyline. Bioinformatics (Oxford, England). 30: 2521-3. PMID 24813211 DOI: 10.1093/bioinformatics/btu148  0.96
2014 Kuhn ML, Zemaitaitis B, Hu LI, Sahu A, Sorensen D, Minasov G, Lima BP, Scholle M, Mrksich M, Anderson WF, Gibson BW, Schilling B, Wolfe AJ. Structural, kinetic and proteomic characterization of acetyl phosphate-dependent bacterial protein acetylation. Plos One. 9: e94816. PMID 24756028 DOI: 10.1371/journal.pone.0094816  0.96
2014 Zawadzka AM, Schilling B, Cusack MP, Sahu AK, Drake P, Fisher SJ, Benz CC, Gibson BW. Phosphoprotein secretome of tumor cells as a source of candidates for breast cancer biomarkers in plasma. Molecular & Cellular Proteomics : McP. 13: 1034-49. PMID 24505115 DOI: 10.1074/mcp.M113.035485  0.96
2014 Rasmussen JA, Post DM, Gibson BW, Lindemann SR, Apicella MA, Meyerholz DK, Jones BD. Francisella tularensis Schu S4 lipopolysaccharide core sugar and O-antigen mutants are attenuated in a mouse model of tularemia. Infection and Immunity. 82: 1523-39. PMID 24452684 DOI: 10.1128/IAI.01640-13  0.96
2014 Schilling B, Hunt J, Gibson BW, Apicella MA. Site-specific acylation changes in the lipid A of Escherichia coli lpxL mutants grown at high temperatures. Innate Immunity. 20: 269-82. PMID 23812252 DOI: 10.1177/1753425913490534  0.96
2013 Rardin MJ, He W, Nishida Y, Newman JC, Carrico C, Danielson SR, Guo A, Gut P, Sahu AK, Li B, Uppala R, Fitch M, Riiff T, Zhu L, Zhou J, ... ... Gibson BW, et al. SIRT5 regulates the mitochondrial lysine succinylome and metabolic networks. Cell Metabolism. 18: 920-33. PMID 24315375 DOI: 10.1016/j.cmet.2013.11.013  0.96
2013 Bharathi SS, Zhang Y, Mohsen AW, Uppala R, Balasubramani M, Schreiber E, Uechi G, Beck ME, Rardin MJ, Vockley J, Verdin E, Gibson BW, Hirschey MD, Goetzman ES. Sirtuin 3 (SIRT3) protein regulates long-chain acyl-CoA dehydrogenase by deacetylating conserved lysines near the active site. The Journal of Biological Chemistry. 288: 33837-47. PMID 24121500 DOI: 10.1074/jbc.M113.510354  0.96
2013 Rardin MJ, Held JM, Gibson BW. Targeted quantitation of acetylated lysine peptides by selected reaction monitoring mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1077: 121-31. PMID 24014403 DOI: 10.1007/978-1-62703-637-5_8  0.96
2013 Jing E, O'Neill BT, Rardin MJ, Kleinridders A, Ilkeyeva OR, Ussar S, Bain JR, Lee KY, Verdin EM, Newgard CB, Gibson BW, Kahn CR. Sirt3 regulates metabolic flexibility of skeletal muscle through reversible enzymatic deacetylation. Diabetes. 62: 3404-17. PMID 23835326 DOI: 10.2337/db12-1650  0.96
2013 Held JM, Schilling B, D'Souza AK, Srinivasan T, Behring JB, Sorensen DJ, Benz CC, Gibson BW. Label-Free Quantitation and Mapping of the ErbB2 Tumor Receptor by Multiple Protease Digestion with Data-Dependent (MS1) and Data-Independent (MS2) Acquisitions. International Journal of Proteomics. 2013: 791985. PMID 23710360 DOI: 10.1155/2013/791985  0.96
2013 Abbatiello SE, Mani DR, Schilling B, Maclean B, Zimmerman LJ, Feng X, Cusack MP, Sedransk N, Hall SC, Addona T, Allen S, Dodder NG, Ghosh M, Held JM, Hedrick V, ... ... Gibson BW, et al. Design, implementation and multisite evaluation of a system suitability protocol for the quantitative assessment of instrument performance in liquid chromatography-multiple reaction monitoring-MS (LC-MRM-MS). Molecular & Cellular Proteomics : McP. 12: 2623-39. PMID 23689285 DOI: 10.1074/mcp.M112.027078  0.96
2013 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW. Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways. Proceedings of the National Academy of Sciences of the United States of America. 110: 6601-6. PMID 23576753 DOI: 10.1073/pnas.1302961110  0.96
2013 Drake P, Schilling B, Gibson B, Fisher S. Elucidation of N-glycosites within human plasma glycoproteins for cancer biomarker discovery. Methods in Molecular Biology (Clifton, N.J.). 951: 307-22. PMID 23296540 DOI: 10.1007/978-1-62703-146-2_21  0.96
2012 Choi SW, Gerencser AA, Ng R, Flynn JM, Melov S, Danielson SR, Gibson BW, Nicholls DG, Bredesen DE, Brand MD. No consistent bioenergetic defects in presynaptic nerve terminals isolated from mouse models of Alzheimer's disease. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 16775-84. PMID 23175831 DOI: 10.1523/JNEUROSCI.2414-12.2012  0.96
2012 Vernochet C, Mourier A, Bezy O, Macotela Y, Boucher J, Rardin MJ, An D, Lee KY, Ilkayeva OR, Zingaretti CM, Emanuelli B, Smyth G, Cinti S, Newgard CB, Gibson BW, et al. Adipose-specific deletion of TFAM increases mitochondrial oxidation and protects mice against obesity and insulin resistance. Cell Metabolism. 16: 765-76. PMID 23168219 DOI: 10.1016/j.cmet.2012.10.016  0.96
2012 Peters TW, Rardin MJ, Czerwieniec G, Evani US, Reis-Rodrigues P, Lithgow GJ, Mooney SD, Gibson BW, Hughes RE. Tor1 regulates protein solubility in Saccharomyces cerevisiae. Molecular Biology of the Cell. 23: 4679-88. PMID 23097491 DOI: 10.1091/mbc.E12-08-0620  0.96
2012 Flynn JM, Czerwieniec GA, Choi SW, Day NU, Gibson BW, Hubbard A, Melov S. Proteogenomics of synaptosomal mitochondrial oxidative stress. Free Radical Biology & Medicine. 53: 1048-60. PMID 22796328 DOI: 10.1016/j.freeradbiomed.2012.07.004  0.96
2012 Phillips NJ, Steichen CT, Schilling B, Post DM, Niles RK, Bair TB, Falsetta ML, Apicella MA, Gibson BW. Proteomic analysis of Neisseria gonorrhoeae biofilms shows shift to anaerobic respiration and changes in nutrient transport and outermembrane proteins. Plos One. 7: e38303. PMID 22701624 DOI: 10.1371/journal.pone.0038303  0.96
2012 Ma ZQ, Polzin KO, Dasari S, Chambers MC, Schilling B, Gibson BW, Tran BQ, Vega-Montoto L, Liebler DC, Tabb DL. QuaMeter: multivendor performance metrics for LC-MS/MS proteomics instrumentation. Analytical Chemistry. 84: 5845-50. PMID 22697456 DOI: 10.1021/ac300629p  0.96
2012 Held JM, Britton DJ, Scott GK, Lee EL, Schilling B, Baldwin MA, Gibson BW, Benz CC. Ligand binding promotes CDK-dependent phosphorylation of ER-alpha on hinge serine 294 but inhibits ligand-independent phosphorylation of serine 305. Molecular Cancer Research : McR. 10: 1120-32. PMID 22669764 DOI: 10.1158/1541-7786.MCR-12-0099  0.96
2012 Agrawal P, Chen YT, Schilling B, Gibson BW, Hughes RE. Ubiquitin-specific peptidase 9, X-linked (USP9X) modulates activity of mammalian target of rapamycin (mTOR). The Journal of Biological Chemistry. 287: 21164-75. PMID 22544753 DOI: 10.1074/jbc.M111.328021  0.96
2012 Zhang N, Li B, Al-Ramahi I, Cong X, Held JM, Kim E, Botas J, Gibson BW, Ellerby LM. Inhibition of lipid signaling enzyme diacylglycerol kinase epsilon attenuates mutant huntingtin toxicity. The Journal of Biological Chemistry. 287: 21204-13. PMID 22511757 DOI: 10.1074/jbc.M111.321661  0.96
2012 Schilling B, Rardin MJ, MacLean BX, Zawadzka AM, Frewen BE, Cusack MP, Sorensen DJ, Bereman MS, Jing E, Wu CC, Verdin E, Kahn CR, Maccoss MJ, Gibson BW. Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation. Molecular & Cellular Proteomics : McP. 11: 202-14. PMID 22454539 DOI: 10.1074/mcp.M112.017707  0.96
2012 Drake PM, Schilling B, Niles RK, Prakobphol A, Li B, Jung K, Cho W, Braten M, Inerowicz HD, Williams K, Albertolle M, Held JM, Iacovides D, Sorensen DJ, Griffith OL, ... ... Gibson BW, et al. Lectin chromatography/mass spectrometry discovery workflow identifies putative biomarkers of aggressive breast cancers. Journal of Proteome Research. 11: 2508-20. PMID 22309216 DOI: 10.1021/pr201206w  0.96
2012 Post DM, Yu L, Krasity BC, Choudhury B, Mandel MJ, Brennan CA, Ruby EG, McFall-Ngai MJ, Gibson BW, Apicella MA. O-antigen and core carbohydrate of Vibrio fischeri lipopolysaccharide: composition and analysis of their role in Euprymna scolopes light organ colonization. The Journal of Biological Chemistry. 287: 8515-30. PMID 22247546 DOI: 10.1074/jbc.M111.324012  0.96
2012 Held JM, Gibson BW. Regulatory control or oxidative damage? Proteomic approaches to interrogate the role of cysteine oxidation status in biological processes. Molecular & Cellular Proteomics : McP. 11: R111.013037. PMID 22159599 DOI: 10.1074/mcp.R111.013037  0.96
2012 Reis-Rodrigues P, Czerwieniec G, Peters TW, Evani US, Alavez S, Gaman EA, Vantipalli M, Mooney SD, Gibson BW, Lithgow GJ, Hughes RE. Proteomic analysis of age-dependent changes in protein solubility identifies genes that modulate lifespan. Aging Cell. 11: 120-7. PMID 22103665 DOI: 10.1111/j.1474-9726.2011.00765.x  0.96
2011 Rogers AN, Chen D, McColl G, Czerwieniec G, Felkey K, Gibson BW, Hubbard A, Melov S, Lithgow GJ, Kapahi P. Life span extension via eIF4G inhibition is mediated by posttranscriptional remodeling of stress response gene expression in C. elegans. Cell Metabolism. 14: 55-66. PMID 21723504 DOI: 10.1016/j.cmet.2011.05.010  0.96
2011 Cong X, Held JM, DeGiacomo F, Bonner A, Chen JM, Schilling B, Czerwieniec GA, Gibson BW, Ellerby LM. Mass spectrometric identification of novel lysine acetylation sites in huntingtin. Molecular & Cellular Proteomics : McP. 10: M111.009829. PMID 21685499 DOI: 10.1074/mcp.M111.009829  0.96
2011 Lucanic M, Held JM, Vantipalli MC, Klang IM, Graham JB, Gibson BW, Lithgow GJ, Gill MS. N-acylethanolamine signalling mediates the effect of diet on lifespan in Caenorhabditis elegans. Nature. 473: 226-9. PMID 21562563 DOI: 10.1038/nature10007  0.96
2011 Li B, Held JM, Schilling B, Danielson SR, Gibson BW. Confident identification of 3-nitrotyrosine modifications in mass spectral data across multiple mass spectrometry platforms. Journal of Proteomics. 74: 2510-21. PMID 21514405 DOI: 10.1016/j.jprot.2011.04.007  0.96
2011 Phillips NJ, Adin DM, Stabb EV, McFall-Ngai MJ, Apicella MA, Gibson BW. The lipid A from Vibrio fischeri lipopolysaccharide: a unique structure bearing a phosphoglycerol moiety. The Journal of Biological Chemistry. 286: 21203-19. PMID 21498521 DOI: 10.1074/jbc.M111.239475  0.96
2011 Danielson SR, Held JM, Oo M, Riley R, Gibson BW, Andersen JK. Quantitative mapping of reversible mitochondrial Complex I cysteine oxidation in a Parkinson disease mouse model. The Journal of Biological Chemistry. 286: 7601-8. PMID 21196577 DOI: 10.1074/jbc.M110.190108  0.96
2011 Drake PM, Schilling B, Niles RK, Braten M, Johansen E, Liu H, Lerch M, Sorensen DJ, Li B, Allen S, Hall SC, Witkowska HE, Regnier FE, Gibson BW, Fisher SJ. A lectin affinity workflow targeting glycosite-specific, cancer-related carbohydrate structures in trypsin-digested human plasma. Analytical Biochemistry. 408: 71-85. PMID 20705048 DOI: 10.1016/j.ab.2010.08.010  0.96
2010 Sperandio S, Poksay KS, Schilling B, Crippen D, Gibson BW, Bredesen DE. Identification of new modulators and protein alterations in non-apoptotic programmed cell death. Journal of Cellular Biochemistry. 111: 1401-12. PMID 20830744 DOI: 10.1002/jcb.22870  0.96
2010 Apicella MA, Post DM, Fowler AC, Jones BD, Rasmussen JA, Hunt JR, Imagawa S, Choudhury B, Inzana TJ, Maier TM, Frank DW, Zahrt TC, Chaloner K, Jennings MP, McLendon MK, ... Gibson BW, et al. Identification, characterization and immunogenicity of an O-antigen capsular polysaccharide of Francisella tularensis. Plos One. 5: e11060. PMID 20625403 DOI: 10.1371/journal.pone.0011060  0.96
2010 Marx C, Held JM, Gibson BW, Benz CC. ErbB2 trafficking and degradation associated with K48 and K63 polyubiquitination. Cancer Research. 70: 3709-17. PMID 20406983 DOI: 10.1158/0008-5472.CAN-09-3768  0.96
2010 Held JM, Danielson SR, Behring JB, Atsriku C, Britton DJ, Puckett RL, Schilling B, Campisi J, Benz CC, Gibson BW. Targeted quantitation of site-specific cysteine oxidation in endogenous proteins using a differential alkylation and multiple reaction monitoring mass spectrometry approach. Molecular & Cellular Proteomics : McP. 9: 1400-10. PMID 20233844 DOI: 10.1074/mcp.M900643-MCP200  0.96
2010 Johansen EB, Szoka FC, Zaleski A, Apicella MA, Gibson BW. Utilizing the O-antigen lipopolysaccharide biosynthesis pathway in Escherichia coli to interrogate the substrate specificities of exogenous glycosyltransferase genes in a combinatorial approach. Glycobiology. 20: 763-74. PMID 20208062 DOI: 10.1093/glycob/cwq033  0.96
2010 Drake PM, Cho W, Li B, Prakobphol A, Johansen E, Anderson NL, Regnier FE, Gibson BW, Fisher SJ. Sweetening the pot: adding glycosylation to the biomarker discovery equation. Clinical Chemistry. 56: 223-36. PMID 19959616 DOI: 10.1373/clinchem.2009.136333  0.96
2010 Tabb DL, Vega-Montoto L, Rudnick PA, Variyath AM, Ham AJ, Bunk DM, Kilpatrick LE, Billheimer DD, Blackman RK, Cardasis HL, Carr SA, Clauser KR, Jaffe JD, Kowalski KA, Neubert TA, ... ... Gibson BW, et al. Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry. Journal of Proteome Research. 9: 761-76. PMID 19921851 DOI: 10.1021/pr9006365  0.96
2010 Paulovich AG, Billheimer D, Ham AJ, Vega-Montoto L, Rudnick PA, Tabb DL, Wang P, Blackman RK, Bunk DM, Cardasis HL, Clauser KR, Kinsinger CR, Schilling B, Tegeler TJ, Variyath AM, ... ... Gibson BW, et al. Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance. Molecular & Cellular Proteomics : McP. 9: 242-54. PMID 19858499 DOI: 10.1074/mcp.M900222-MCP200  0.96
2010 Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, ... ... Gibson BW, et al. Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Molecular & Cellular Proteomics : McP. 9: 225-41. PMID 19837981 DOI: 10.1074/mcp.M900223-MCP200  0.96
2010 Lee BY, Jethwaney D, Schilling B, Clemens DL, Gibson BW, Horwitz MA. The Mycobacterium bovis bacille Calmette-Guerin phagosome proteome. Molecular & Cellular Proteomics : McP. 9: 32-53. PMID 19815536 DOI: 10.1074/mcp.M900396-MCP200  0.96
2009 Johansen E, Schilling B, Lerch M, Niles RK, Liu H, Li B, Allen S, Hall SC, Witkowska HE, Regnier FE, Gibson BW, Fisher SJ, Drake PM. A lectin HPLC method to enrich selectively-glycosylated peptides from complex biological samples. Journal of Visualized Experiments : Jove. PMID 19798022 DOI: 10.3791/1398  0.96
2009 Danielson SR, Held JM, Schilling B, Oo M, Gibson BW, Andersen JK. Preferentially increased nitration of alpha-synuclein at tyrosine-39 in a cellular oxidative model of Parkinson's disease. Analytical Chemistry. 81: 7823-8. PMID 19697948 DOI: 10.1021/ac901176t  0.96
2009 Gafni J, Cong X, Chen SF, Gibson BW, Ellerby LM. Calpain-1 cleaves and activates caspase-7. The Journal of Biological Chemistry. 284: 25441-9. PMID 19617626 DOI: 10.1074/jbc.M109.038174  0.96
2009 Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJ, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, ... ... Gibson BW, et al. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nature Biotechnology. 27: 633-41. PMID 19561596 DOI: 10.1038/nbt.1546  0.96
2009 Ma ZQ, Dasari S, Chambers MC, Litton MD, Sobecki SM, Zimmerman LJ, Halvey PJ, Schilling B, Drake PM, Gibson BW, Tabb DL. IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering. Journal of Proteome Research. 8: 3872-81. PMID 19522537 DOI: 10.1021/pr900360j  0.96
2009 Atsriku C, Britton DJ, Held JM, Schilling B, Scott GK, Gibson BW, Benz CC, Baldwin MA. Systematic mapping of posttranslational modifications in human estrogen receptor-alpha with emphasis on novel phosphorylation sites. Molecular & Cellular Proteomics : McP. 8: 467-80. PMID 18984578 DOI: 10.1074/mcp.M800282-MCP200  0.96
2008 Britton DJ, Scott GK, Schilling B, Atsriku C, Held JM, Gibson BW, Benz CC, Baldwin MA. A novel serine phosphorylation site detected in the N-terminal domain of estrogen receptor isolated from human breast cancer cells. Journal of the American Society For Mass Spectrometry. 19: 729-40. PMID 18367407 DOI: 10.1016/j.jasms.2008.02.008  0.96
2008 Guo X, Bandyopadhyay P, Schilling B, Young MM, Fujii N, Aynechi T, Guy RK, Kuntz ID, Gibson BW. Partial acetylation of lysine residues improves intraprotein cross-linking. Analytical Chemistry. 80: 951-60. PMID 18201069 DOI: 10.1021/ac701636w  0.96
2008 Adin DM, Phillips NJ, Gibson BW, Apicella MA, Ruby EG, McFall-Ngai MJ, Hall DB, Stabb EV. Characterization of htrB and msbB mutants of the light organ symbiont Vibrio fischeri. Applied and Environmental Microbiology. 74: 633-44. PMID 18065606 DOI: 10.1128/AEM.02138-07  0.96
2008 Johnston JW, Coussens NP, Allen S, Houtman JC, Turner KH, Zaleski A, Ramaswamy S, Gibson BW, Apicella MA. Characterization of the N-acetyl-5-neuraminic acid-binding site of the extracytoplasmic solute receptor (SiaP) of nontypeable Haemophilus influenzae strain 2019. The Journal of Biological Chemistry. 283: 855-65. PMID 17947229 DOI: 10.1074/jbc.M706603200  0.96
2007 Johnston JW, Zaleski A, Allen S, Mootz JM, Armbruster D, Gibson BW, Apicella MA, Munson RS. Regulation of sialic acid transport and catabolism in Haemophilus influenzae. Molecular Microbiology. 66: 26-39. PMID 17880422 DOI: 10.1111/j.1365-2958.2007.05890.x  0.96
2007 McLendon MK, Schilling B, Hunt JR, Apicella MA, Gibson BW. Identification of LpxL, a late acyltransferase of Francisella tularensis. Infection and Immunity. 75: 5518-31. PMID 17724076 DOI: 10.1128/IAI.01288-06  0.96
2007 Jethwaney D, Islam MR, Leidal KG, de Bernabe DB, Campbell KP, Nauseef WM, Gibson BW. Proteomic analysis of plasma membrane and secretory vesicles from human neutrophils. Proteome Science. 5: 12. PMID 17692124 DOI: 10.1186/1477-5956-5-12  0.96
2007 Post DM, Gibson BW. Proposed second class of Haemophilus ducreyi strains show altered protein and lipooligosaccharide profiles. Proteomics. 7: 3131-42. PMID 17676659 DOI: 10.1002/pmic.200600830  0.96
2007 Melov S, Adlard PA, Morten K, Johnson F, Golden TR, Hinerfeld D, Schilling B, Mavros C, Masters CL, Volitakis I, Li QX, Laughton K, Hubbard A, Cherny RA, Gibson B, et al. Mitochondrial oxidative stress causes hyperphosphorylation of tau. Plos One. 2: e536. PMID 17579710 DOI: 10.1371/journal.pone.0000536  0.96
2007 Murray J, Schilling B, Row RH, Yoo CB, Gibson BW, Marusich MF, Capaldi RA. Small-scale immunopurification of cytochrome c oxidase for a high-throughput multiplexing analysis of enzyme activity and amount. Biotechnology and Applied Biochemistry. 48: 167-78. PMID 17508937 DOI: 10.1042/BA20060223  0.96
2007 Atsriku C, Benz CC, Scott GK, Gibson BW, Baldwin MA. Quantification of cysteine oxidation in human estrogen receptor by mass spectrometry. Analytical Chemistry. 79: 3083-90. PMID 17373775 DOI: 10.1021/ac062154o  0.96
2007 Schilling B, McLendon MK, Phillips NJ, Apicella MA, Gibson BW. Characterization of lipid A acylation patterns in Francisella tularensis, Francisella novicida, and Francisella philomiragia using multiple-stage mass spectrometry and matrix-assisted laser desorption/ionization on an intermediate vacuum source linear ion trap. Analytical Chemistry. 79: 1034-42. PMID 17263332 DOI: 10.1021/ac061654e  0.96
2007 Post DM, Munson RS, Baker B, Zhong H, Bozue JA, Gibson BW. Identification of genes involved in the expression of atypical lipooligosaccharide structures from a second class of Haemophilus ducreyi. Infection and Immunity. 75: 113-21. PMID 17030566 DOI: 10.1128/IAI.01016-06  0.96
2006 Benz CC, Atsriku C, Yau C, Britton D, Schilling B, Gibson BW, Baldwin MA, Scott GK. Novel pathways associated with quinone-induced stress in breast cancer cells. Drug Metabolism Reviews. 38: 601-13. PMID 17145690 DOI: 10.1080/03602530600959391  0.96
2006 Erwin AL, Allen S, Ho DK, Bonthuis PJ, Bonthius PJ, Jarisch J, Nelson KL, Tsao DL, Unrath WC, Watson ME, Gibson BW, Apicella MA, Smith AL. Role of lgtC in resistance of nontypeable Haemophilus influenzae strain R2866 to human serum. Infection and Immunity. 74: 6226-35. PMID 16966407 DOI: 10.1128/IAI.00722-06  0.96
2006 Held JM, White MP, Fisher AL, Gibson BW, Lithgow GJ, Gill MS. DAF-12-dependent rescue of dauer formation in Caenorhabditis elegans by (25S)-cholestenoic acid. Aging Cell. 5: 283-91. PMID 16913876 DOI: 10.1111/j.1474-9726.2006.00218.x  0.96
2006 Schilling B, Gafni J, Torcassi C, Cong X, Row RH, LaFevre-Bernt MA, Cusack MP, Ratovitski T, Hirschhorn R, Ross CA, Gibson BW, Ellerby LM. Huntingtin phosphorylation sites mapped by mass spectrometry. Modulation of cleavage and toxicity. The Journal of Biological Chemistry. 281: 23686-97. PMID 16782707 DOI: 10.1074/jbc.M513507200  0.96
2006 Post DM, Zhang D, Weiss JP, Gibson BW. Stable isotope metabolic labeling of Neisseria meningitidis lipooligosaccharide. Journal of Endotoxin Research. 12: 93-8. PMID 16690012 DOI: 10.1179/096805106X102156  0.96
2006 Schilling B, Murray J, Yoo CB, Row RH, Cusack MP, Capaldi RA, Gibson BW. Proteomic analysis of succinate dehydrogenase and ubiquinol-cytochrome c reductase (Complex II and III) isolated by immunoprecipitation from bovine and mouse heart mitochondria. Biochimica Et Biophysica Acta. 1762: 213-22. PMID 16120479 DOI: 10.1016/j.bbadis.2005.07.003  0.96
2005 Post DM, Mungur R, Gibson BW, Munson RS. Identification of a novel sialic acid transporter in Haemophilus ducreyi. Infection and Immunity. 73: 6727-35. PMID 16177350 DOI: 10.1128/IAI.73.10.6727-6735.2005  0.96
2005 Allen S, Zaleski A, Johnston JW, Gibson BW, Apicella MA. Novel sialic acid transporter of Haemophilus influenzae. Infection and Immunity. 73: 5291-300. PMID 16113244 DOI: 10.1128/IAI.73.9.5291-5300.2005  0.96
2005 Post DM, Zhang D, Eastvold JS, Teghanemt A, Gibson BW, Weiss JP. Biochemical and functional characterization of membrane blebs purified from Neisseria meningitidis serogroup B. The Journal of Biological Chemistry. 280: 38383-94. PMID 16103114 DOI: 10.1074/jbc.M508063200  0.96
2005 Cottrell BA, Galvan V, Banwait S, Gorostiza O, Lombardo CR, Williams T, Schilling B, Peel A, Gibson B, Koo EH, Link CD, Bredesen DE. A pilot proteomic study of amyloid precursor interactors in Alzheimer's disease. Annals of Neurology. 58: 277-89. PMID 16049941 DOI: 10.1002/ana.20554  0.96
2005 Scott GK, Atsriku C, Kaminker P, Held J, Gibson B, Baldwin MA, Benz CC. Vitamin K3 (menadione)-induced oncosis associated with keratin 8 phosphorylation and histone H3 arylation. Molecular Pharmacology. 68: 606-15. PMID 15939799 DOI: 10.1124/mol.105.013474  0.96
2005 Schilling B, Aggeler R, Schulenberg B, Murray J, Row RH, Capaldi RA, Gibson BW. Mass spectrometric identification of a novel phosphorylation site in subunit NDUFA10 of bovine mitochondrial complex I. Febs Letters. 579: 2485-90. PMID 15848193 DOI: 10.1016/j.febslet.2005.03.061  0.96
2005 Edwards KJ, Allen S, Gibson BW, Campagnari AA. Characterization of a cluster of three glycosyltransferase enzymes essential for Moraxella catarrhalis lipooligosaccharide assembly. Journal of Bacteriology. 187: 2939-47. PMID 15838019 DOI: 10.1128/JB.187.9.2939-2947.2005  0.96
2005 Gibson BW. The human mitochondrial proteome: oxidative stress, protein modifications and oxidative phosphorylation. The International Journal of Biochemistry & Cell Biology. 37: 927-34. PMID 15743667 DOI: 10.1016/j.biocel.2004.11.013  0.96
2005 Schilling B, Bharath M M S, Row RH, Murray J, Cusack MP, Capaldi RA, Freed CR, Prasad KN, Andersen JK, Gibson BW. Rapid purification and mass spectrometric characterization of mitochondrial NADH dehydrogenase (Complex I) from rodent brain and a dopaminergic neuronal cell line. Molecular & Cellular Proteomics : McP. 4: 84-96. PMID 15591592 DOI: 10.1074/mcp.M400143-MCP200  0.96
2004 Gill MS, Held JM, Fisher AL, Gibson BW, Lithgow GJ. Lipophilic regulator of a developmental switch in Caenorhabditis elegans. Aging Cell. 3: 413-21. PMID 15569358 DOI: 10.1111/j.1474-9728.2004.00126.x  0.96
2004 Phillips NJ, Schilling B, McLendon MK, Apicella MA, Gibson BW. Novel modification of lipid A of Francisella tularensis. Infection and Immunity. 72: 5340-8. PMID 15322031 DOI: 10.1128/IAI.72.9.5340-5348.2004  0.96
2004 Pupo E, Phillips NJ, Gibson BW, Apicella MA, Hardy E. Matrix-assisted laser desorption/ionization-time of flight-mass spectrometry of lipopolysaccharide species separated by slab-polyacrylamide gel electrophoresis: high-resolution separation and molecular weight determination of lipooligosaccharides from Vibrio fischeri strain HMK. Electrophoresis. 25: 2156-64. PMID 15273999 DOI: 10.1002/elps.200405980  0.96
2004 Gaucher SP, Taylor SW, Fahy E, Zhang B, Warnock DE, Ghosh SS, Gibson BW. Expanded coverage of the human heart mitochondrial proteome using multidimensional liquid chromatography coupled with tandem mass spectrometry. Journal of Proteome Research. 3: 495-505. PMID 15253431 DOI: 10.1021/pr034102a  0.96
2004 Greiner LL, Watanabe H, Phillips NJ, Shao J, Morgan A, Zaleski A, Gibson BW, Apicella MA. Nontypeable Haemophilus influenzae strain 2019 produces a biofilm containing N-acetylneuraminic acid that may mimic sialylated O-linked glycans. Infection and Immunity. 72: 4249-60. PMID 15213170 DOI: 10.1128/IAI.72.7.4249-4260.2004  0.96
2004 Gibson BW. Exploiting proteomics in the discovery of drugs that target mitochondrial oxidative damage. Science of Aging Knowledge Environment : Sage Ke. 2004: pe12. PMID 15028863 DOI: 10.1126/sageke.2004.11.pe12  0.96
2004 Jin K, Mao XO, Cottrell B, Schilling B, Xie L, Row RH, Sun Y, Peel A, Childs J, Gendeh G, Gibson BW, Greenberg DA. Proteomic and immunochemical characterization of a role for stathmin in adult neurogenesis. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 18: 287-99. PMID 14769823 DOI: 10.1096/fj.03-0973com  0.96
2004 Bensing BA, Gibson BW, Sullam PM. The Streptococcus gordonii platelet binding protein GspB undergoes glycosylation independently of export. Journal of Bacteriology. 186: 638-45. PMID 14729688 DOI: 10.1128/JB.186.3.638-645.2004  0.96
2004 Rao RV, Poksay KS, Castro-Obregon S, Schilling B, Row RH, del Rio G, Gibson BW, Ellerby HM, Bredesen DE. Molecular components of a cell death pathway activated by endoplasmic reticulum stress. The Journal of Biological Chemistry. 279: 177-87. PMID 14561754 DOI: 10.1074/jbc.M304490200  0.96
2004 Schilling B, Yoo CB, Collins CJ, Gibson BW. Determining cysteine oxidation status using differential alkylation International Journal of Mass Spectrometry. 236: 117-127. DOI: 10.1016/j.ijms.2004.06.004  0.96
2003 Scheffler NK, Falick AM, Hall SC, Ray WC, Post DM, Munson RS, Gibson BW. Proteome of Haemophilus ducreyi by 2-D SDS-PAGE and mass spectrometry: strain variation, virulence, and carbohydrate expression. Journal of Proteome Research. 2: 523-33. PMID 14582649 DOI: 10.1021/pr0340025  0.96
2003 Luke NR, Allen S, Gibson BW, Campagnari AA. Identification of a 3-deoxy-D-manno-octulosonic acid biosynthetic operon in Moraxella catarrhalis and analysis of a KdsA-deficient isogenic mutant. Infection and Immunity. 71: 6426-34. PMID 14573664 DOI: 10.1128/IAI.71.11.6426-6434.2003  0.96
2003 Knight ZA, Schilling B, Row RH, Kenski DM, Gibson BW, Shokat KM. Phosphospecific proteolysis for mapping sites of protein phosphorylation. Nature Biotechnology. 21: 1047-54. PMID 12923550 DOI: 10.1038/nbt863  0.36
2003 Schilling B, Row RH, Gibson BW, Guo X, Young MM. MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides. Journal of the American Society For Mass Spectrometry. 14: 834-50. PMID 12892908 DOI: 10.1016/S1044-0305(03)00327-1  0.96
2003 Lee JC, Taylor CV, Gaucher SP, Toneff T, Taupenot L, Yasothornsrikul S, Mahata SK, Sei C, Parmer RJ, Neveu JM, Lane WS, Gibson BW, O'Connor DT, Hook VY. Primary sequence characterization of catestatin intermediates and peptides defines proteolytic cleavage sites utilized for converting chromogranin a into active catestatin secreted from neuroendocrine chromaffin cells. Biochemistry. 42: 6938-46. PMID 12795588 DOI: 10.1021/bi0300433  0.96
2003 Goon S, Schilling B, Tullius MV, Gibson BW, Bertozzi CR. Metabolic incorporation of unnatural sialic acids into Haemophilus ducreyi lipooligosaccharides. Proceedings of the National Academy of Sciences of the United States of America. 100: 3089-94. PMID 12615992 DOI: 10.1073/pnas.0437851100  0.96
2003 Taylor SW, Fahy E, Zhang B, Glenn GM, Warnock DE, Wiley S, Murphy AN, Gaucher SP, Capaldi RA, Gibson BW, Ghosh SS. Characterization of the human heart mitochondrial proteome. Nature Biotechnology. 21: 281-6. PMID 12592411 DOI: 10.1038/nbt793  0.96
2003 Post DM, Ketterer MR, Phillips NJ, Gibson BW, Apicella MA. The msbB mutant of Neisseria meningitidis strain NMB has a defect in lipooligosaccharide assembly and transport to the outer membrane. Infection and Immunity. 71: 647-55. PMID 12540541 DOI: 10.1128/IAI.71.2.647-655.2003  0.96
2002 Taylor SW, Warnock DE, Glenn GM, Zhang B, Fahy E, Gaucher SP, Capaldi RA, Gibson BW, Ghosh SS. An alternative strategy to determine the mitochondrial proteome using sucrose gradient fractionation and 1D PAGE on highly purified human heart mitochondria. Journal of Proteome Research. 1: 451-8. PMID 12645917 DOI: 10.1021/pr025533g  0.96
2002 Sun S, Scheffler NK, Gibson BW, Wang J, Munson RS. Identification and characterization of the N-acetylglucosamine glycosyltransferase gene of Haemophilus ducreyi. Infection and Immunity. 70: 5887-92. PMID 12228324 DOI: 10.1128/IAI.70.10.5887-5892.2002  0.96
2002 Schilling B, Gibson BW, Filiatrault M, Campagnari AA. Characterization of lipooligosaccharides from Haemophilus ducreyi containing polylactosamine repeats. Journal of the American Society For Mass Spectrometry. 13: 724-34. PMID 12056572 DOI: 10.1016/S1044-0305(02)00375-6  0.96
2002 Tullius MV, Phillips NJ, Scheffler NK, Samuels NM, Munson Jr RS, Hansen EJ, Stevens-Riley M, Campagnari AA, Gibson BW. The lbgAB gene cluster of Haemophilus ducreyi encodes a beta-1,4-galactosyltransferase and an alpha-1,6-DD-heptosyltransferase involved in lipooligosaccharide biosynthesis. Infection and Immunity. 70: 2853-61. PMID 12010972 DOI: 10.1128/IAI.70.6.2853-2861.2002  0.96
2002 Jones PA, Samuels NM, Phillips NJ, Munson RS, Bozue JA, Arseneau JA, Nichols WA, Zaleski A, Gibson BW, Apicella MA. Haemophilus influenzae type b strain A2 has multiple sialyltransferases involved in lipooligosaccharide sialylation. The Journal of Biological Chemistry. 277: 14598-611. PMID 11842084 DOI: 10.1074/jbc.M110986200  0.96
2002 Post DM, Phillips NJ, Shao JQ, Entz DD, Gibson BW, Apicella MA. Intracellular survival of Neisseria gonorrhoeae in male urethral epithelial cells: importance of a hexaacyl lipid A. Infection and Immunity. 70: 909-20. PMID 11796626 DOI: 10.1128/IAI.70.2.909-920.2002  0.96
2002 Zhang B, Taylor SW, Warnock DE, Glenn GM, Fahy E, Gaucher SP, Capaldi RA, Gibson BW, Ghosh SS. An alternative 2D strategy using sucrose gradients and 1D PAGE on highly purified mitochondria. High throughput mitochondrial proteomics Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 249-250.  0.96
2002 Allen S, Luchansky S, Schilling B, Phillips NJ, Goon S, Zaleski A, Bertozzi CR, Apicella MA, Gibson BW. Title: Sialylation of Haemophilus lipooligosaccharides: Sialic acid acceptor sites and new reactive chemistries Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 463-464.  0.96
2002 Falick AM, Gibson BW, Graber A, Juhasz P, Khainovski NG, Marchese J, Martin SA, Munson RS, Parker KC, Patterson DH, Ray WC, Scheffler NK, Williamson BL. High-throughput identification of H. ducreyi proteins by means of 2-dimensional chromatography and tandem time-of-flight mass spectrometry Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 147-148.  0.96
2002 Guo X, Schilling B, Young M, Medzihradszky M, Kuntz ID, Guy RK, Gibson BW. Using homobifunctional crosslinking reagents with normal and N-15 labeled proteins for the determination of protein tertiary structure and protein-protein interactions Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 249-250.  0.96
2002 Gaucher SP, Fahy E, Warnock DE, Glenn GM, Taylor SW, Zhang B, Ghosh SS, Gibson BW. Toward a complete human mitochondrial proteome: Solution based (non-gel) sample prep and LC MS/MS analyses Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 191-192.  0.96
2002 Schilling B, Collins CJ, Young MM, Guo X, Kuntz ID, Leavitt AD, Guy K, Gibson BW. Chemical cross-linking strategies to determine protein conformation using a combinatorial set of cross-linking reagents Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 125-126.  0.96
2001 Scheffler NK, Miller SW, Carroll AK, Anderson C, Davis RE, Ghosh SS, Gibson BW. Two-dimensional electrophoresis and mass spectrometric identification of mitochondrial proteins from an SH-SY5Y neuroblastoma cell line. Mitochondrion. 1: 161-79. PMID 16120276 DOI: 10.1016/S1567-7249(01)00007-1  0.96
2001 Schilling B, Goon S, Samuels NM, Gaucher SP, Leary JA, Bertozzi CR, Gibson BW. Biosynthesis of sialylated lipooligosaccharides in Haemophilus ducreyi is dependent on exogenous sialic acid and not mannosamine. Incorporation studies using N-acylmannosamine analogues, N-glycolylneuraminic acid, and 13C-labeled N-acetylneuraminic acid. Biochemistry. 40: 12666-77. PMID 11601991 DOI: 10.1021/bi0107849  0.96
2001 He H, Chen M, Scheffler NK, Gibson BW, Spremulli LL, Gottlieb RA. Phosphorylation of mitochondrial elongation factor Tu in ischemic myocardium: basis for chloramphenicol-mediated cardioprotection. Circulation Research. 89: 461-7. PMID 11532908  0.96
2001 Sarver A, Scheffler NK, Shetlar MD, Gibson BW. Analysis of peptides and proteins containing nitrotyrosine by matrix-assisted laser desorption/ionization mass spectrometry Journal of the American Society For Mass Spectrometry. 12: 439-448. PMID 11322190 DOI: 10.1016/S1044-0305(01)00213-6  0.96
2001 Hoang VM, Foulk R, Clauser K, Burlingame A, Gibson BW, Fisher SJ. Functional proteomics: Examining the effects of hypoxia on the cytotrophoblast protein repertoire Biochemistry. 40: 4077-4086. PMID 11300788 DOI: 10.1021/bi0023910  0.96
2000 Gaucher SP, Cancilla MT, Phillips NJ, Gibson BW, Leary JA. Mass spectral characterization of lipooligosaccharides from Haemophilus influenzae 2019. Biochemistry. 39: 12406-14. PMID 11015221 DOI: 10.1021/bi001181k  0.96
2000 Zaleski A, Scheffler NK, Densen P, Lee FKN, Campagnari AA, Gibson BW, Apicella MA. Lipooligosaccharide P(k) (Galα1-4Galβ1-4Glc) epitope of Moraxella catarrhalis is a factor in resistance to bactericidal activity mediated by normal human serum Infection and Immunity. 68: 5261-5268. PMID 10948153 DOI: 10.1128/IAI.68.9.5261-5268.2000  0.96
2000 Swords WE, Buscher BA, Ver Steeg Ii K, Preston A, Nichols WA, Weiser JN, Gibson BW, Apicella MA. Non-typeable Haemophilus influenzae adhere to and invade human bronchial epithelial cells via an interaction of lipooligosaccharide with the PAF receptor. Molecular Microbiology. 37: 13-27. PMID 10931302 DOI: 10.1046/j.1365-2958.2000.01952.x  0.96
2000 Harvey HA, Porat N, Campbell CA, Jennings M, Gibson BW, Phillips NJ, Apicella MA, Blake MS. Gonococcal lipooligosaccharide is a ligand for the asialoglycoprotein receptor on human sperm. Molecular Microbiology. 36: 1059-70. PMID 10844691 DOI: 10.1046/j.1365-2958.2000.01938.x  0.96
2000 Filiatrault MJ, Gibson BW, Schilling B, Sun S, Munson RS, Campagnari AA. Construction and characterization of Haemophilus ducreyi lipooligosaccharide (LOS) mutants defective in expression of heptosyltransferase III and beta1,4-glucosyltransferase: identification of LOS glycoforms containing lactosamine repeats. Infection and Immunity. 68: 3352-61. PMID 10816485 DOI: 10.1128/IAI.68.6.3352-3361.2000  0.96
2000 Young MM, Tang N, Hempel JC, Oshiro CM, Taylor EW, Kuntz ID, Gibson BW, Dollinger G. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 97: 5802-6. PMID 10811876 DOI: 10.1073/pnas.090099097  0.96
2000 Sun S, Schilling B, Tarantino L, Tullius MV, Gibson BW, Munson RS. Cloning and characterization of the lipooligosaccharide galactosyltransferase II gene of Haemophilus ducreyi Journal of Bacteriology. 182: 2292-2298. PMID 10735874 DOI: 10.1128/JB.182.8.2292-2298.2000  0.96
2000 Phillips NJ, Miller TJ, Engstrom JJ, Melaugh W, McLaughlin R, Apicella MA, Gibson BW. Characterization of chimeric lipopolysaccharides from Escherichia coli strain JM109 transformed with lipooligosaccharide synthesis genes (lsg) from Haemophilus influenzae. The Journal of Biological Chemistry. 275: 4747-58. PMID 10671507 DOI: 10.1074/jbc.275.7.4747  0.96
1999 Samuels NM, Gibson BW, Miller SM. Investigation of the kinetic mechanism of cytidine 5'-monophosphate N-acetylneuraminic acid synthetase from Haemophilus ducreyi with new insights on rate-limiting steps from product inhibition analysis. Biochemistry. 38: 6195-203. PMID 10320348 DOI: 10.1021/bi990282j  0.96
1999 Tullius MV, Vann WF, Gibson BW. Covalent modification of Lys19 in the CTP binding site of cytidine 5'- monophosphate N-acetylneuraminic acid synthetase Protein Science. 8: 666-675. PMID 10091669  0.96
1999 Gobin J, Wong DK, Gibson BW, Horwitz MA. Characterization of exochelins of the Mycobacterium bovis type strain and BCG substrains Infection and Immunity. 67: 2035-2039. PMID 10085056  0.96
1999 Lee FKN, Gibson BW, Melaugh W, Zaleski A, Apicella MA. Relationship between UDP-glucose 4-epimerase activity and oligoglucose glycoforms in two strains of Neisseria meningitidis Infection and Immunity. 67: 1405-1414. PMID 10024588  0.96
1999 Bozue JA, Tullius MV, Wang J, Gibson BW, Munson RS. Haemophilus ducreyi produces a novel sialyltransferase: Identification of the sialyltransferase gene and construction of mutants deficient in the production of the sialic acid-containing glycoform of the lipooligosaccharide Journal of Biological Chemistry. 274: 4106-4114. PMID 9933604 DOI: 10.1074/jbc.274.7.4106  0.96
1999 Wong DK, Lee BY, Horwitz MA, Gibson BW. Identification of fur, aconitase, and other proteins expressed by Mycobacterium tuberculosis under conditions of low and high concentrations of iron by combined two-dimensional gel electrophoresis and mass spectrometry Infection and Immunity. 67: 327-336. PMID 9864233  0.96
1997 Jones BD, Nichols WA, Gibson BW, Sunshine MG, Apicella MA. Study of the role of the htrB gene in Salmonella typhimurium virulence. Infection and Immunity. 65: 4778-83. PMID 9353064  0.96
1997 Sunshine MG, Gibson BW, Engstrom JJ, Nichols WA, Jones BD, Apicella MA. Mutation of the htrB gene in a virulent Salmonella typhimurium strain by intergeneric transduction: strain construction and phenotypic characterization. Journal of Bacteriology. 179: 5521-33. PMID 9287009  0.96
1997 Gibson BW, Campagnari AA, Melaugh W, Phillips NJ, Apicella MA, Grass S, Wang J, Palmer KL, Munson RS. Characterization of a transposon Tn916-generated mutant of Haemophilus ducreyi 35000 defective in lipooligosaccharide biosynthesis Journal of Bacteriology. 179: 5062-5071. PMID 9260947  0.96
1997 Nichols WA, Gibson BW, Melaugh W, Lee NG, Sunshine M, Apicella MA. Identification of the ADP-L-glycero-D-manno-heptose-6-epimerase (rfaD) and heptosyltransferase II (rfaF) biosynthesis genes from nontypeable Haemophilus influenzae 2019. Infection and Immunity. 65: 1377-86. PMID 9119477  0.96
1997 Gibson BW, Engstrom JJ, John CM, Hines W, Falick AM. Characterization of bacterial lipooligosaccharides by delayed extraction matrix-assisted laser desorption ionization time-of-flight mass spectrometry Journal of the American Society For Mass Spectrometry. 8: 645-658. DOI: 10.1016/S1044-0305(97)00042-1  0.96
1996 Preston A, Mandrell RE, Gibson BW, Apicella MA. The lipooligosaccharides of pathogenic gram-negative bacteria Critical Reviews in Microbiology. 22: 139-180. PMID 8894399  0.96
1996 Wong DK, Gobin J, Horwitz MA, Gibson BW. Characterization of exochelins of Mycobacterium avium: Evidence for saturated and unsaturated and for acid and ester forms Journal of Bacteriology. 178: 6394-6398. PMID 8892850  0.96
1996 Phillips NJ, McLaughlin R, Miller TJ, Apicella MA, Gibson BW. Characterization of two transposon mutants from Haemophilus influenzae type b with altered lipooligosaccharide biosynthesis. Biochemistry. 35: 5937-47. PMID 8639556 DOI: 10.1021/bi960059b  0.96
1996 Nagalla SR, Barry BJ, Falick AM, Gibson BW, Taylor JE, Dong JZ, Spindel ER. There are three distinct forms of bombesin. Identification of [Leu13]bombesin, [Phe13]bombesin, and [Ser3,Arg10,Phe13]bombesin in the frog Bombina orientalis. The Journal of Biological Chemistry. 271: 7731-7. PMID 8631814  0.96
1996 Melaugh W, Campagnari AA, Gibson BW. The lipooligosaccharides of Haemophilus ducreyi are highly sialylated Journal of Bacteriology. 178: 564-570. PMID 8550483  0.96
1996 Gibson BW, Phillips NJ, Melaugh W, Engstrom JJ. Determining Structures and Functions of Surface Glycolipids in Pathogenic Haemophilus Bacteria by Electrospray Ionization Mass Spectrometry Acs Symposium Series. 619: 166-184.  0.96
1995 Moore CH, Foster LA, Gerbig DG, Dyer DW, Gibson BW. Identification of alcaligin as the siderophore produced by Bordetella pertussis and B. bronchiseptica Journal of Bacteriology. 177: 1116-1118. PMID 7860593  0.96
1995 Lee FKN, Stephens DS, Gibson BW, Engstrom JJ, Zhou D, Apicella MA. Microheterogeneity of Neisseria lipooligosaccharide: Analysis of a UDP- glucose 4-epimerase mutant of Neisseria miningitidis NMB Infection and Immunity. 63: 2508-2515. PMID 7790063  0.96
1995 Gobin J, Moore CH, Reeve JR, Wong DK, Gibson BW, Horwitz MA. Iron acquisition by Mycobacterium tuberculosis: Isolation and characterization of a family of iron-binding exochelins Proceedings of the National Academy of Sciences of the United States of America. 92: 5189-5193. PMID 7761471 DOI: 10.1073/pnas.92.11.5189  0.96
1995 Lee NG, Sunshine MG, Engstrom JJ, Gibson BW, Apicella MA. Mutation of the htrB locus of Haemophilus influenzae nontypable strain 2019 is associated with modifications of lipid A and phosphorylation of the lipo-oligosaccharide Journal of Biological Chemistry. 270: 27151-27159. PMID 7592970 DOI: 10.1074/jbc.270.45.27151  0.96
1994 Gibson BW, Medzihradszky D, Hines WM, Auriola S, Kenyon GL. Mass spectrometric characterization of a series of adenosylated peptides acting as bisubstrate analogs of protein kinases. Journal of the American Society For Mass Spectrometry. 5: 443-51. PMID 24222599 DOI: 10.1016/1044-0305(94)85060-7  0.96
1994 Campagnari AA, Karalus R, Apicella M, Melaugh W, Lesse AJ, Gibson BW. Use of pyocin to select a Haemophilus ducreyi variant defective in lipooligosaccharide biosynthesis Infection and Immunity. 62: 2379-2386. PMID 8188362  0.96
1994 Zhou D, Stephens DS, Gibson BW, Engstrom JJ, McAllister CF, Lee FKN, Apicella MA. Lipooligosaccharide biosynthesis in pathogenic Neisseria. Cloning, identification, and characterization of the phosphoglucomutase gene Journal of Biological Chemistry. 269: 11162-11169. PMID 8157643  0.96
1994 Melaugh W, Phillips NJ, Campagnari AA, Tullius MV, Gibson BW. Structure of the major oligosaccharide from the lipooligosaccharide of Haemophilus ducreyi strain 35000 and evidence for additional glycoforms Biochemistry. 33: 13070-13078. PMID 7947712 DOI: 10.1021/bi00248a016  0.96
1994 Kim JJ, Phillips NJ, Gibson BW, Griffiss JM, Yamasaki R. Meningococcal group A lipooligosaccharides (LOS): Preliminary structural studies and characterization of serotype-associated and conserved LOS epitopes Infection and Immunity. 62: 1566-1575. PMID 7513302  0.96
1994 Medzihradszky D, Chen SL, Kenyon GL, Gibson BW. Solid-phase synthesis of adenosine phosphopeptides as potential bisubstrate inhibitors of protein kinases Journal of the American Chemical Society. 116: 9413-9419. DOI: 10.1021/ja00100a001  0.96
1993 Stahl N, Baldwin MA, Teplow DB, Hood L, Gibson BW, Burlingame AL, Prusiner SB. Structural studies of the scrapie prion protein using mass spectrometry and amino acid sequencing. Biochemistry. 32: 1991-2002. PMID 8448158  0.96
1993 Gibson BW, Melaugh W, Phillips NJ, Apicella MA, Campagnari AA, Griffiss JM. Investigation of the structural heterogeneity of lipooligosaccharides from pathogenic Haemophilus and Neisseria species and of R-type lipopolysaccharides from Salmonella typhimurium by electrospray mass spectrometry Journal of Bacteriology. 175: 2702-2712. PMID 8386724  0.96
1993 Falick AM, Hines WM, Medzihradszky KF, Baldwin MA, Gibson BW. Low-mass ions produced from peptides by high-energy collision-induced dissociation in tandem mass spectrometry Journal of the American Society For Mass Spectrometry. 4: 882-893. DOI: 10.1016/1044-0305(93)87006-X  0.96
1993 Phillips NJ, Apicella MA, McLeod Griffiss J, Gibson BW. Structural studies of the lipooligosaccharides from haemophilus influenzae type b Strain A2 Biochemistry. 32: 2003-2012.  0.96
1992 Medzihradszky KF, Gibson BW, Kaur S, Yu Z, Medzihradszky D, Burlingame AL, Bass NM. The primary structure of fatty-acid-binding protein from nurse shark liver. Structural and evolutionary relationship to the mammalian fatty-acid-binding protein family European Journal of Biochemistry. 203: 327-339. PMID 1735421  0.96
1992 Melaugh W, Phillips NJ, Campagnari AA, Karalus R, Gibson BW. Partial characterization of the major lipooligosaccharide from a strain of Haemophilus ducreyi, the causative agent of chancroid, a genital ulcer disease Journal of Biological Chemistry. 267: 13434-13439. PMID 1618845  0.96
1992 Nagalla SR, Gibson BW, Tang D, Reeve JR, Spindel ER. Gastrin-releasing peptide (GRP) is not mammalian bombesin. Identification and molecular cloning of a true amphibian GRP distinct from amphibian bombesin in Bombina orientalis. The Journal of Biological Chemistry. 267: 6916-22. PMID 1551901  0.96
1992 Parker CT, Kloser AW, Schnaitman CA, Stein MA, Gottesman S, Gibson BW. Role of the rfaG and rfaP genes in determining the lipopolysaccharide core structure and cell surface properties of Escherichia coli K-12. Journal of Bacteriology. 174: 2525-38. PMID 1348243  0.96
1992 Hines WM, Falick AM, Burlingame AL, Gibson BW. Pattern-based algorithm for peptide sequencing from tandem high energy collision-induced dissociation mass spectra Journal of the American Society For Mass Spectrometry. 3: 326-336. DOI: 10.1016/1044-0305(92)87060-C  0.96
1992 Phillips NJ, Apicella MA, Griffiss JM, Gibson BW. Structural characterization of the cell surface lipooligosaccharides from a nontypable strain of Haemophilus influenzae Biochemistry. 31: 4515-4526.  0.96
1991 Cohen P, Gibson BW, Holmes CFB. Analysis of the in vivo phosphorylation states of proteins by fast atom bombardment mass spectrometry and other techniques Methods in Enzymology. 201: 153-168. PMID 1943762  0.96
1991 John CM, Griffiss JM, Apicella MA, Mandrell RE, Gibson BW. The structural basis for pyocin resistance in Neisseria gonorrhoeae lipooligosaccharides Journal of Biological Chemistry. 266: 19303-19311. PMID 1918047  0.96
1991 Gibson BW, Tang DZ, Mandrell R, Kelly M, Spindel ER. Bombinin-like peptides with antimicrobial activity from skin secretions of the Asian toad, Bombina orientalis. The Journal of Biological Chemistry. 266: 23103-11. PMID 1744108  0.96
1991 Mandrell RE, Kim JJ, John CM, Gibson BW, Sugai JV, Apicella MA, Griffiss JM, Yamasaki R. Endogenous sialylation of the lipooligosaccharides of Neisseria meningitidis Journal of Bacteriology. 173: 2823-2832. PMID 1708379  0.96
1990 Spindel ER, Gibson BW, Reeve JR, Kelly M. Cloning of cDNAs encoding amphibian bombesin: evidence for the relationship between bombesin and gastrin-releasing peptide. Proceedings of the National Academy of Sciences of the United States of America. 87: 9813-7. PMID 2263631  0.96
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