| Year |
Citation |
Score |
| 2020 |
Edwards RJ, Paulsen K, Aguilar Gomez CM, Pérez-Bercoff Å. Computational Prediction of Disordered Protein Motifs Using SLiMSuite. Methods in Molecular Biology (Clifton, N.J.). 2141: 37-72. PMID 32696352 DOI: 10.1007/978-1-0716-0524-0_3 |
0.45 |
|
| 2019 |
Davey NE, Babu MM, Blackledge M, Bridge A, Capella-Gutierrez S, Dosztanyi Z, Drysdale R, Edwards RJ, Elofsson A, Felli IC, Gibson TJ, Gutmanas A, Hancock JM, Harrow J, Higgins D, et al. An intrinsically disordered proteins community for ELIXIR. F1000research. 8. PMID 31824649 DOI: 10.12688/F1000Research.20136.1 |
0.65 |
|
| 2019 |
Holland SI, Edwards RJ, Ertan H, Wong YK, Russell TL, Deshpande NP, Manefield MJ, Lee M. Whole genome sequencing of a novel, dichloromethane-fermenting from an enrichment culture. Peerj. 7: e7775. PMID 31592187 DOI: 10.7717/Peerj.7775 |
0.395 |
|
| 2018 |
Idrees S, Pérez-Bercoff Å, Edwards RJ. Correction: SLiMEnrich: computational assessment of protein-protein interaction data as a source of domain-motif interactions. Peerj. 6. PMID 30488013 DOI: 10.7717/Peerj.5858/Correction-1 |
0.401 |
|
| 2018 |
Idrees S, Pérez-Bercoff Å, Edwards RJ. SLiM-Enrich: computational assessment of protein-protein interaction data as a source of domain-motif interactions. Peerj. 6: e5858. PMID 30402352 DOI: 10.7717/peerj.5858 |
0.366 |
|
| 2018 |
Edwards R, Amos T, Tang J, Cawood B, Rispin S, Tuipulotu DE, Waters P. Pseudodiploid pseudo-long-read whole genome sequencing and assembly of Pseudonaja textilis (eastern brown snake) and Notechis scutatus (mainland tiger snake) F1000research. 7. DOI: 10.7490/F1000Research.1115550.1 |
0.319 |
|
| 2016 |
Skipp PJ, Hughes C, McKenna T, Edwards R, Langridge J, Thomson NR, Clarke IN. Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis. Plos One. 11: e0149011. PMID 26871455 DOI: 10.1371/Journal.Pone.0149011 |
0.384 |
|
| 2015 |
Olorin E, O'Brien KT, Palopoli N, Pérez-Bercoff Å, Shields DC, Edwards RJ. SLiMScape 3.x: a Cytoscape 3 app for discovery of Short Linear Motifs in protein interaction networks. F1000research. 4: 477. PMID 26674271 DOI: 10.12688/F1000Research.6773.1 |
0.587 |
|
| 2015 |
Palopoli N, Lythgow KT, Edwards RJ. QSLiMFinder: improved short linear motif prediction using specific query protein data. Bioinformatics (Oxford, England). 31: 2284-93. PMID 25792551 DOI: 10.1093/Bioinformatics/Btv155 |
0.423 |
|
| 2015 |
Edwards RJ, Palopoli N. Computational prediction of short linear motifs from protein sequences. Methods in Molecular Biology (Clifton, N.J.). 1268: 89-141. PMID 25555723 DOI: 10.1007/978-1-4939-2285-7_6 |
0.507 |
|
| 2015 |
Pérez-Bercoff Å, Russell T, Attfield P, Bell P, Edwards R. The SMRT way to sequence a yeast genome F1000research. 4. DOI: 10.7490/F1000Research.1110766.1 |
0.322 |
|
| 2014 |
Palopoli N, Edwards R. Computational prediction of protein interaction motifs using interaction networks and 3-dimensional structures F1000research. 5. DOI: 10.7490/F1000Research.1097130.1 |
0.361 |
|
| 2014 |
Menon R, Palopoli N, Edwards R. Computational prediction of molecular mimicry in host-pathogen protein-protein interactions F1000research. 5. DOI: 10.7490/F1000Research.1096434.1 |
0.382 |
|
| 2014 |
Palopoli N, Edwards RJ. Computational prediction of protein interaction motifs from integrated protein sequence, structure and interaction data F1000research. 5. DOI: 10.7490/F1000Research.1096433.1 |
0.465 |
|
| 2014 |
Palopoli N, Edwards RJ. Computational prediction of short linear motifs integrating protein-protein interactions, sequence and structural data F1000research. 5. DOI: 10.7490/F1000Research.1095517.1 |
0.49 |
|
| 2013 |
Palopoli N, Edwards RJ. Improved computational prediction of short linear motifs using specific protein-protein interaction data F1000research. 4. DOI: 10.7490/F1000Research.1093025.1 |
0.46 |
|
| 2013 |
Edwards RJ, Palopoli N. Computational prediction of short linear motifs mediating host-pathogen protein-protein interactions F1000research. 4. DOI: 10.7490/F1000Research.1093024.1 |
0.425 |
|
| 2012 |
Davey NE, Cowan JL, Shields DC, Gibson TJ, Coldwell MJ, Edwards RJ. SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions. Nucleic Acids Research. 40: 10628-41. PMID 22977176 DOI: 10.1093/Nar/Gks854 |
0.711 |
|
| 2012 |
Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, ... ... Edwards RJ, et al. ELM--the database of eukaryotic linear motifs. Nucleic Acids Research. 40: D242-51. PMID 22110040 DOI: 10.1093/Nar/Gkr1064 |
0.799 |
|
| 2012 |
Edwards RJ, Davey NE, O'Brien K, Shields DC. Interactome-wide prediction of short, disordered protein interaction motifs in humans. Molecular Biosystems. 8: 282-95. PMID 21879107 DOI: 10.7490/F1000Research.1089989.1 |
0.716 |
|
| 2012 |
Lythgow KT, Edwards RJ. QSLiMFinder: query-focused short, linear motif prediction F1000research. 3. DOI: 10.7490/F1000Research.1090060.1 |
0.344 |
|
| 2011 |
Davey NE, Haslam NJ, Shields DC, Edwards RJ. SLiMSearch 2.0: biological context for short linear motifs in proteins. Nucleic Acids Research. 39: W56-60. PMID 21622654 DOI: 10.1093/Nar/Gkr402 |
0.796 |
|
| 2011 |
Jones BM, Edwards RJ, Skipp PJ, O'Connor CD, Iglesias-Rodriguez MD. Shotgun proteomic analysis of Emiliania huxleyi, a marine phytoplankton species of major biogeochemical importance. Marine Biotechnology (New York, N.Y.). 13: 496-504. PMID 20924652 DOI: 10.1007/S10126-010-9320-0 |
0.431 |
|
| 2010 |
Davey NE, Edwards RJ, Shields DC. Computational identification and analysis of protein short linear motifs. Frontiers in Bioscience (Landmark Edition). 15: 801-25. PMID 20515727 DOI: 10.2741/3647 |
0.724 |
|
| 2010 |
Davey NE, Haslam NJ, Shields DC, Edwards RJ. SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs. Nucleic Acids Research. 38: W534-9. PMID 20497999 DOI: 10.1093/Nar/Gkq440 |
0.789 |
|
| 2010 |
Raab M, Daxecker H, Edwards RJ, Treumann A, Murphy D, Moran N. Protein interactions with the platelet integrin alpha(IIb) regulatory motif. Proteomics. 10: 2790-800. PMID 20486118 DOI: 10.1002/Pmic.200900621 |
0.411 |
|
| 2010 |
Davey NE, Edwards RJ, Shields DC. Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins. Bmc Bioinformatics. 11: 14. PMID 20055997 DOI: 10.1186/1471-2105-11-14 |
0.715 |
|
| 2010 |
Davey NE, Haslam NJ, Shields DC, Edwards RJ. SLiMSearch: A webserver for finding novel occurrences of short linear motifs in proteins, incorporating sequence context Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6282: 50-61. DOI: 10.1007/978-3-642-16001-1_5 |
0.789 |
|
| 2009 |
Davey NE, Shields DC, Edwards RJ. Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery. Bioinformatics (Oxford, England). 25: 443-50. PMID 19136552 DOI: 10.1093/Bioinformatics/Btn664 |
0.736 |
|
| 2008 |
Edwards RJ, Davey NE, Shields DC. CompariMotif: quick and easy comparisons of sequence motifs. Bioinformatics (Oxford, England). 24: 1307-9. PMID 18375965 DOI: 10.1093/Bioinformatics/Btn105 |
0.703 |
|
| 2008 |
Shields DC, Johnston CR, Wallace IM, Edwards RJ. Evolution of specificity and diversity Ancestral Sequence Reconstruction. DOI: 10.1093/acprof:oso/9780199299188.003.0019 |
0.452 |
|
| 2007 |
Edwards RJ, Davey NE, Shields DC. SLiMFinder: a probabilistic method for identifying over-represented, convergently evolved, short linear motifs in proteins. Plos One. 2: e967. PMID 17912346 DOI: 10.1371/Journal.Pone.0000967 |
0.715 |
|
| 2007 |
Davey NE, Edwards RJ, Shields DC. The SLiMDisc server: short, linear motif discovery in proteins. Nucleic Acids Research. 35: W455-9. PMID 17576682 DOI: 10.1093/Nar/Gkm400 |
0.737 |
|
| 2007 |
Edwards RJ, Moran N, Devocelle M, Kiernan A, Meade G, Signac W, Foy M, Park SD, Dunne E, Kenny D, Shields DC. Bioinformatic discovery of novel bioactive peptides. Nature Chemical Biology. 3: 108-12. PMID 17220901 DOI: 10.1038/Nchembio854 |
0.553 |
|
| 2007 |
Johnston CR, O'Dushlaine C, Fitzpatrick DA, Edwards RJ, Shields DC. Evaluation of whether accelerated protein evolution in chordates has occurred before, after, or simultaneously with gene duplication. Molecular Biology and Evolution. 24: 315-23. PMID 17065596 DOI: 10.1093/Molbev/Msl162 |
0.549 |
|
| 2006 |
Parthasarathi L, Devocelle M, Søndergaard C, Baran I, O'Dushlaine CT, Davey NE, Edwards RJ, Moran N, Kenny D, Shields DC. Absolute net charge and the biological activity of oligopeptides. Journal of Chemical Information and Modeling. 46: 2183-90. PMID 16995748 DOI: 10.1021/Ci0600760 |
0.643 |
|
| 2006 |
Moran N, Kiernan A, Dunne E, Edwards RJ, Shields DC, Kenny D. Monitoring modulators of platelet aggregation in a microtiter plate assay. Analytical Biochemistry. 357: 77-84. PMID 16920064 DOI: 10.1016/J.Ab.2006.06.037 |
0.471 |
|
| 2006 |
Davey NE, Shields DC, Edwards RJ. SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent. Nucleic Acids Research. 34: 3546-54. PMID 16855291 DOI: 10.1093/Nar/Gkl486 |
0.735 |
|
| 2005 |
Kelly P, Maguire PB, Bennett M, Fitzgerald DJ, Edwards RJ, Thiede B, Treumann A, Collins JK, O'Sullivan GC, Shanahan F, Dunne C. Correlation of probiotic Lactobacillus salivarius growth phase with its cell wall-associated proteome. Fems Microbiology Letters. 252: 153-9. PMID 16214296 DOI: 10.1016/J.Femsle.2005.08.051 |
0.324 |
|
| 2005 |
Edwards RJ, Shields DC. BADASP: predicting functional specificity in protein families using ancestral sequences. Bioinformatics (Oxford, England). 21: 4190-1. PMID 16159912 DOI: 10.1093/Bioinformatics/Bti678 |
0.644 |
|
| 2005 |
O'Dushlaine CT, Edwards RJ, Park SD, Shields DC. Tandem repeat copy-number variation in protein-coding regions of human genes. Genome Biology. 6: R69. PMID 16086851 DOI: 10.1186/Gb-2005-6-8-R69 |
0.591 |
|
| 2004 |
Edwards RJ, Shields DC. GASP: Gapped Ancestral Sequence Prediction for proteins. Bmc Bioinformatics. 5: 123. PMID 15350199 DOI: 10.1186/1471-2105-5-123 |
0.6 |
|
| 2003 |
Edwards RJ, Brookfield JF. Transiently beneficial insertions could maintain mobile DNA sequences in variable environments. Molecular Biology and Evolution. 20: 30-7. PMID 12519903 DOI: 10.1093/Molbev/Msg001 |
0.569 |
|
| 2002 |
Edwards RJ, Sockett RE, Brookfield JF. A simple method for genome-wide screening for advantageous insertions of mobile DNAs in Escherichia coli. Current Biology : Cb. 12: 863-7. PMID 12015126 DOI: 10.1016/S0960-9822(02)00837-0 |
0.586 |
|
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