| Year |
Citation |
Score |
| 2020 |
Banerjee R, Weisenhorn E, Schwartz KJ, Myers KS, Glasner JD, Perna NT, Coon JJ, Welch RA, Kiley PJ. Tailoring a Global Iron Regulon to a Uropathogen. Mbio. 11. PMID 32209682 DOI: 10.1128/Mbio.00351-20 |
0.606 |
|
| 2019 |
Ma X, Perna NT, Glasner JD, Hao J, Johnson S, Nasaruddin AS, Charkowski AO, Wu S, Fei Z, Perry KL, Stodghill P, Swingle B. Complete Genome Sequence of Dickeya dianthicola ME23, a Pathogen Causing Blackleg and Soft Rot Diseases of Potato. Microbiology Resource Announcements. 8. PMID 30801063 DOI: 10.1128/MRA.01526-18 |
0.692 |
|
| 2014 |
Hori C, Ishida T, Igarashi K, Samejima M, Suzuki H, Master E, Ferreira P, Ruiz-Dueñas FJ, Held B, Canessa P, Larrondo LF, Schmoll M, Druzhinina IS, Kubicek CP, Gaskell JA, ... ... Glasner J, et al. Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood. Plos Genetics. 10: e1004759. PMID 25474575 DOI: 10.1371/Journal.Pgen.1004759 |
0.305 |
|
| 2014 |
Ma B, Charkowski AO, Glasner JD, Perna NT. Identification of host-microbe interaction factors in the genomes of soft rot-associated pathogens Dickeya dadantii 3937 and Pectobacterium carotovorum WPP14 with supervised machine learning. Bmc Genomics. 15: 508. PMID 24952641 DOI: 10.1186/1471-2164-15-508 |
0.705 |
|
| 2013 |
Babujee L, Balakrishnan V, Kiley PJ, Glasner JD, Perna NT. Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909). Plos One. 8: e76567. PMID 24116118 DOI: 10.1371/Journal.Pone.0076567 |
0.613 |
|
| 2012 |
Babujee L, Apodaca J, Balakrishnan V, Liss P, Kiley PJ, Charkowski AO, Glasner JD, Perna NT. Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria. Bmc Genomics. 13: 110. PMID 22439737 DOI: 10.1186/1471-2164-13-110 |
0.609 |
|
| 2012 |
Baumler DJ, Banta LM, Hung KF, Schwarz JA, Cabot EL, Glasner JD, Perna NT. Using comparative genomics for inquiry-based learning to dissect virulence of Escherichia coli O157:H7 and Yersinia pestis. Cbe Life Sciences Education. 11: 81-93. PMID 22383620 DOI: 10.1187/Cbe.10-04-0057 |
0.685 |
|
| 2011 |
Baumler DJ, Peplinski RG, Reed JL, Glasner JD, Perna NT. The evolution of metabolic networks of E. coli. Bmc Systems Biology. 5: 182. PMID 22044664 DOI: 10.1186/1752-0509-5-182 |
0.629 |
|
| 2011 |
Glasner JD, Yang CH, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van Gijsegem F, Yang S, Franza T, Expert D, Plunkett G, San Francisco MJ, Charkowski AO, Py B, Bell K, et al. Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193: 2076-7. PMID 21217001 DOI: 10.1128/Jb.01513-10 |
0.679 |
|
| 2010 |
Torto-Alalibo T, Collmer CW, Gwinn-Giglio M, Lindeberg M, Meng S, Chibucos MC, Tseng TT, Lomax J, Biehl B, Ireland A, Bird D, Dean RA, Glasner JD, Perna N, Setubal JC, et al. Unifying themes in microbial associations with animal and plant hosts described using the gene ontology. Microbiology and Molecular Biology Reviews : Mmbr. 74: 479-503. PMID 21119014 DOI: 10.1128/Mmbr.00017-10 |
0.647 |
|
| 2010 |
Dufour YS, Wesenberg GE, Tritt AJ, Glasner JD, Perna NT, Mitchell JC, Donohue TJ. chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. Nucleic Acids Research. 38: W321-5. PMID 20529880 DOI: 10.1093/Nar/Gkq517 |
0.623 |
|
| 2010 |
Rodríguez-Palenzuela P, Matas IM, Murillo J, López-Solanilla E, Bardaji L, Pérez-Martínez I, Rodríguez-Moskera ME, Penyalver R, López MM, Quesada JM, Biehl BS, Perna NT, Glasner JD, Cabot EL, Neeno-Eckwall E, et al. Annotation and overview of the Pseudomonas savastanoi pv. savastanoi NCPPB 3335 draft genome reveals the virulence gene complement of a tumour-inducing pathogen of woody hosts. Environmental Microbiology. 12: 1604-20. PMID 20370821 DOI: 10.1111/J.1462-2920.2010.02207.X |
0.711 |
|
| 2009 |
Rissman AI, Mau B, Biehl BS, Darling AE, Glasner JD, Perna NT. Reordering contigs of draft genomes using the Mauve aligner. Bioinformatics (Oxford, England). 25: 2071-3. PMID 19515959 DOI: 10.1093/Bioinformatics/Btp356 |
0.681 |
|
| 2009 |
Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G, Shaker M, Pot D. Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens. Bmc Bioinformatics. 10: 177. PMID 19515247 DOI: 10.1186/1471-2105-10-177 |
0.593 |
|
| 2009 |
Lindeberg M, Biehl BS, Glasner JD, Perna NT, Collmer A, Collmer CW. Gene Ontology annotation highlights shared and divergent pathogenic strategies of type III effector proteins deployed by the plant pathogen Pseudomonas syringae pv tomato DC3000 and animal pathogenic Escherichia coli strains. Bmc Microbiology. 9: S4. PMID 19278552 DOI: 10.1186/1471-2180-9-S1-S4 |
0.706 |
|
| 2008 |
Glasner JD, Plunkett G, Anderson BD, Baumler DJ, Biehl BS, Burland V, Cabot EL, Darling AE, Mau B, Neeno-Eckwall EC, Pot D, Qiu Y, Rissman AI, Worzella S, Zaremba S, et al. Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. Nucleic Acids Research. 36: D519-23. PMID 17999997 DOI: 10.1093/Nar/Gkm973 |
0.655 |
|
| 2007 |
Ma B, Hibbing ME, Kim HS, Reedy RM, Yedidia I, Breuer J, Breuer J, Glasner JD, Perna NT, Kelman A, Charkowski AO. Host range and molecular phylogenies of the soft rot enterobacterial genera pectobacterium and dickeya. Phytopathology. 97: 1150-63. PMID 18944180 DOI: 10.1094/Phyto-97-9-1150 |
0.633 |
|
| 2007 |
Greene JM, Plunkett G, Burland V, Glasner J, Cabot E, Anderson B, Neeno-Eckwall E, Qiu Y, Mau B, Rusch M, Liss P, Hampton T, Pot D, Shaker M, Shaull L, et al. A new asset for pathogen informatics--the Enteropathogen Resource Integration Center (ERIC), an NIAID Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Disease. Advances in Experimental Medicine and Biology. 603: 28-42. PMID 17966403 DOI: 10.1007/978-0-387-72124-8_4 |
0.727 |
|
| 2006 |
Mau B, Glasner JD, Darling AE, Perna NT. Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli. Genome Biology. 7: R44. PMID 16737554 DOI: 10.1186/Gb-2006-7-5-R44 |
0.698 |
|
| 2006 |
Anderson BD, Gilson MC, Scott AA, Biehl BS, Glasner JD, Rajashekara G, Splitter GA, Perna NT. CGHScan: finding variable regions using high-density microarray comparative genomic hybridization data. Bmc Genomics. 7: 91. PMID 16638145 DOI: 10.1186/1471-2164-7-91 |
0.697 |
|
| 2006 |
Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, et al. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Nucleic Acids Research. 34: 1-9. PMID 16397293 DOI: 10.1093/Nar/Gkj405 |
0.684 |
|
| 2006 |
Wu CW, Glasner J, Collins M, Naser S, Talaat AM. Whole-genome plasticity among Mycobacterium avium subspecies: insights from comparative genomic hybridizations. Journal of Bacteriology. 188: 711-23. PMID 16385061 DOI: 10.1128/Jb.188.2.711-723.2006 |
0.385 |
|
| 2006 |
Glasner JD, Rusch M, Liss P, Plunkett G, Cabot EL, Darling A, Anderson BD, Infield-Harm P, Gilson MC, Perna NT. ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. Nucleic Acids Research. 34: D41-5. PMID 16381899 DOI: 10.1093/Nar/Gkj164 |
0.708 |
|
| 2004 |
Rajashekara G, Glasner JD, Glover DA, Splitter GA. Comparative whole-genome hybridization reveals genomic islands in Brucella species. Journal of Bacteriology. 186: 5040-51. PMID 15262941 DOI: 10.1128/Jb.186.15.5040-5051.2004 |
0.38 |
|
| 2004 |
Kang Y, Durfee T, Glasner JD, Qiu Y, Frisch D, Winterberg KM, Blattner FR. Systematic mutagenesis of the Escherichia coli genome Journal of Bacteriology. 186: 4921-4930. PMID 15262929 DOI: 10.1128/Jb.186.15.4921-4930.2004 |
0.36 |
|
| 2003 |
Allen TE, Herrgård MJ, Liu M, Qiu Y, Glasner JD, Blattner FR, Palsson BØ. Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets. Journal of Bacteriology. 185: 6392-9. PMID 14563874 DOI: 10.1128/Jb.185.21.6392-6399.2003 |
0.389 |
|
| 2003 |
Bockhorst J, Qiu Y, Glasner J, Liu M, Blattner F, Craven M. Predicting bacterial transcription units using sequence and expression data. Bioinformatics (Oxford, England). 19: i34-43. PMID 12855435 DOI: 10.1093/Bioinformatics/Btg1003 |
0.342 |
|
| 2003 |
Bockhorst J, Craven M, Page D, Shavlik J, Glasner J. A Bayesian network approach to operon prediction. Bioinformatics (Oxford, England). 19: 1227-35. PMID 12835266 DOI: 10.1093/Bioinformatics/Btg147 |
0.338 |
|
| 2003 |
Glasner JD, Liss P, Plunkett G, Darling A, Prasad T, Rusch M, Byrnes A, Gilson M, Biehl B, Blattner FR, Perna NT. ASAP, a systematic annotation package for community analysis of genomes. Nucleic Acids Research. 31: 147-51. PMID 12519969 DOI: 10.1093/Nar/Gkg125 |
0.718 |
|
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