Ah-Ram Kim, Ph.D.

segment determination, transcriptional regulation
"Ah-Ram Kim"


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John Reinitz grad student 2012 SUNY Stony Brook
 (Breaking the genomic cis-regulatory code by an experimental and theoretical analysis of eve enhancer fusions.)
Manolis Kellis post-doc MIT (Computational Biology Tree)
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Barr KA, Martinez C, Moran JR, et al. (2017) Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation. Bmc Systems Biology. 11: 116
Kundaje A, Meuleman W, et al. (2015) Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30
Martinez C, Rest JS, Kim AR, et al. (2014) Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution. 31: 903-16
Martinez CA, Barr KA, Kim AR, et al. (2013) A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design. Methods (San Diego, Calif.). 62: 91-8
Kim AR, Martinez C, Ionides J, et al. (2013) Rearrangements of 2.5 kilobases of noncoding DNA from the Drosophila even-skipped locus define predictive rules of genomic cis-regulatory logic. Plos Genetics. 9: e1003243
Manu, Surkova S, Spirov AV, et al. (2009) Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation. Plos Biology. 7: e1000049
Manu, Surkova S, Spirov AV, et al. (2009) Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors. Plos Computational Biology. 5: e1000303
Janssens H, Hou S, Jaeger J, et al. (2006) Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene. Nature Genetics. 38: 1159-65
Kim AR, Choi WH, Lee SR, et al. (2002) Phosphorylation of 46-kDa protein of synaptic vesicle membranes is stimulated by GTP and Ca2+/calmodulin. Experimental & Molecular Medicine. 34: 434-43
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