Casey Bergman
Affiliations: | University of Georgia, Athens, Athens, GA, United States |
Area:
evolution, genomics, noncoding DNAWebsite:
http://bergmanlab.genetics.uga.edu/Google:
"Casey Bergman"Cross-listing: Evolution Tree - Computational Biology Tree
Parents
Sign in to add mentorCharles Aquadro | research assistant | 1995-1996 | Cornell | |
Martin Kreitman | grad student | 1996-2001 | Chicago | |
(Evolutionary analyses of transcriptional control sequences in Drosophila.) | ||||
Susan Celniker | post-doc | 2001-2003 | LBNL | |
Michael Ashburner | post-doc | 2003-2005 | Cambridge |
Children
Sign in to add traineeShunhua Han | grad student | 2017- | University of Georgia (Computational Biology Tree) |
Preston Basting | grad student | 2018- | University of Georgia (Computational Biology Tree) |
Jingxuan Chen | grad student | 2019- | University of Georgia (Computational Biology Tree) |
Michael Barton | grad student | 2007-2009 | University of Manchester (Computational Biology Tree) |
Raquel Linheiro | grad student | 2007-2011 | University of Manchester (Computational Biology Tree) |
Martin Gerner | grad student | 2008-2012 | University of Manchester (Computational Biology Tree) |
Pedro Olivares Chauvet | grad student | 2008-2012 | University of Manchester (Computational Biology Tree) |
Florence Gutzwiller | grad student | 2012-2016 | University of Manchester (Computational Biology Tree) |
Manee Manee | grad student | 2012-2016 | University of Manchester (Computational Biology Tree) |
Michael Nelson | grad student | 2012-2016 | University of Manchester (Computational Biology Tree) |
Guilherme Dias | post-doc | 2018- | University of Georgia (Computational Biology Tree) |
Helena Bailes | post-doc | 2006-2007 | University of Manchester (Computational Biology Tree) |
Joachim Baran | post-doc | 2009-2010 | University of Manchester (Computational Biology Tree) |
Dave T. Gerrard | post-doc | 2009-2011 | University of Manchester (Evolution Tree) |
Maximillian Haeussler | post-doc | 2009-2011 | University of Manchester (Computational Biology Tree) |
Mar Marzo | post-doc | 2014-2016 | University of Manchester (Computational Biology Tree) |
Collaborators
Sign in to add collaboratorMichael Ludwig | collaborator | 1996-2001 | Chicago |
Manolis Dermitzakis | collaborator | 2000-2003 | Penn State |
Daniel Avery Pollard | collaborator | 2001-2004 | LBNL (Evolution Tree) |
Dmitri Petrov | collaborator | 2002-2005 | LBNL |
Hadi Quesneville | collaborator | 2003-2007 | Université Pierre et Marie Curie – Paris VI |
David H. Ardell | collaborator | 2004-2007 | Uppsala (Computational Biology Tree) |
Thomas Down | collaborator | 2004-2007 | The Wellcome Trust Sanger Institute (Computational Biology Tree) |
Jose M. Ranz | collaborator | 2004-2007 | Cambridge |
Stein Aerts | collaborator | 2006-2008 | KU Leuven |
Douda Bensasson | collaborator | 2005-2009 | University of Manchester (Evolution Tree) |
Andy Clark | collaborator | 2000-2010 | Cornell |
Sam Griffiths-Jones | collaborator | 2006-2010 | University of Manchester (Computational Biology Tree) |
Goran Nenadic | collaborator | 2006-2011 | University of Manchester (Computational Biology Tree) |
BETA: Related publications
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Publications
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Hannon-Hatfield JA, Chen J, Bergman CM, et al. (2024) Evolution of a restriction factor by domestication of a yeast retrotransposon. Molecular Biology and Evolution |
Chen J, Garfinkel DJ, Bergman CM. (2023) Horizontal transfer and recombination fuel Ty4 retrotransposon evolution in . Biorxiv : the Preprint Server For Biology |
Chen J, Basting PJ, Han S, et al. (2023) Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast. Mobile Dna. 14: 8 |
Chen J, Basting PJ, Han S, et al. (2023) Reproducible evaluation of transposable element detectors with McClintock 2 guides accurate inference of Ty insertion patterns in yeast. Biorxiv : the Preprint Server For Biology |
Han S, Dias GB, Basting PJ, et al. (2022) Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line. Nucleic Acids Research |
Han S, Dias GB, Basting PJ, et al. (2022) Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sub-lines. Genetics |
Chen J, McQueary H, Hall DW, et al. (2022) Genome Assembly of the Ty1-Less Saccharomyces paradoxus Strain DG1768. Microbiology Resource Announcements. 11: e0086821 |
Chen J, Garfinkel DJ, Bergman CM. (2022) Long-Read Genome Assembly of Saccharomyces uvarum Strain CBS 7001. Microbiology Resource Announcements. e0097221 |
Han S, Basting PJ, Dias GB, et al. (2021) Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture. Genetics. 219 |
Mariyappa D, Rusch DB, Han S, et al. (2021) A novel transposable element based authentication protocol for Drosophila cell lines. G3 (Bethesda, Md.) |