Casey Bergman

Affiliations: 
University of Georgia, Athens, Athens, GA, United States 
Area:
evolution, genomics, noncoding DNA
Website:
http://bergmanlab.genetics.uga.edu/
Google:
"Casey Bergman"
Cross-listing: Evolution Tree - Computational Biology Tree

Parents

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Charles Aquadro research assistant 1995-1996 Cornell
Martin Kreitman grad student 1996-2001 Chicago
 (Evolutionary analyses of transcriptional control sequences in Drosophila.)
Susan Celniker post-doc 2001-2003 LBNL
Michael Ashburner post-doc 2003-2005 Cambridge

Children

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Shunhua Han grad student 2017- University of Georgia (Computational Biology Tree)
Preston Basting grad student 2018- University of Georgia (Computational Biology Tree)
Jingxuan Chen grad student 2019- University of Georgia (Computational Biology Tree)
Michael Barton grad student 2007-2009 University of Manchester (Computational Biology Tree)
Raquel Linheiro grad student 2007-2011 University of Manchester (Computational Biology Tree)
Martin Gerner grad student 2008-2012 University of Manchester (Computational Biology Tree)
Pedro Olivares Chauvet grad student 2008-2012 University of Manchester (Computational Biology Tree)
Florence Gutzwiller grad student 2012-2016 University of Manchester (Computational Biology Tree)
Manee Manee grad student 2012-2016 University of Manchester (Computational Biology Tree)
Michael Nelson grad student 2012-2016 University of Manchester (Computational Biology Tree)
Guilherme Dias post-doc 2018- University of Georgia (Computational Biology Tree)
Helena Bailes post-doc 2006-2007 University of Manchester (Computational Biology Tree)
Joachim Baran post-doc 2009-2010 University of Manchester (Computational Biology Tree)
Dave T. Gerrard post-doc 2009-2011 University of Manchester (Evolution Tree)
Maximillian Haeussler post-doc 2009-2011 University of Manchester (Computational Biology Tree)
Mar Marzo post-doc 2014-2016 University of Manchester (Computational Biology Tree)

Collaborators

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Michael Ludwig collaborator 1996-2001 Chicago
Manolis Dermitzakis collaborator 2000-2003 Penn State
Daniel Avery Pollard collaborator 2001-2004 LBNL (Evolution Tree)
Dmitri Petrov collaborator 2002-2005 LBNL
Hadi Quesneville collaborator 2003-2007 Université Pierre et Marie Curie – Paris VI
David H. Ardell collaborator 2004-2007 Uppsala (Computational Biology Tree)
Thomas Down collaborator 2004-2007 The Wellcome Trust Sanger Institute (Computational Biology Tree)
Jose M. Ranz collaborator 2004-2007 Cambridge
Stein Aerts collaborator 2006-2008 KU Leuven
Douda Bensasson collaborator 2005-2009 University of Manchester (Evolution Tree)
Andy Clark collaborator 2000-2010 Cornell
Sam Griffiths-Jones collaborator 2006-2010 University of Manchester (Computational Biology Tree)
Goran Nenadic collaborator 2006-2011 University of Manchester (Computational Biology Tree)
BETA: Related publications

Publications

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Han S, Dias GB, Basting PJ, et al. (2022) Ongoing transposition in cell culture reveals the phylogeny of diverse Drosophila S2 sub-lines. Genetics
Chen J, McQueary H, Hall DW, et al. (2022) Genome Assembly of the Ty1-Less Saccharomyces paradoxus Strain DG1768. Microbiology Resource Announcements. 11: e0086821
Chen J, Garfinkel DJ, Bergman CM. (2022) Long-Read Genome Assembly of Saccharomyces uvarum Strain CBS 7001. Microbiology Resource Announcements. e0097221
Han S, Basting PJ, Dias GB, et al. (2021) Transposable element profiles reveal cell line identity and loss of heterozygosity in Drosophila cell culture. Genetics. 219
Mariyappa D, Rusch DB, Han S, et al. (2021) A novel transposable element based authentication protocol for Drosophila cell lines. G3 (Bethesda, Md.)
Dias GB, Aldossary AM, El-Shafie HAF, et al. (2021) Complete mitochondrial genome of the longhorn date palm stem borer (Reiche, 1878). Mitochondrial Dna. Part B, Resources. 6: 3214-3216
Dias GB, Altammami MA, El-Shafie HAF, et al. (2021) Haplotype-resolved genome assembly enables gene discovery in the red palm weevil Rhynchophorus ferrugineus. Scientific Reports. 11: 9987
Chung M, Basting PJ, Patkus RS, et al. (2020) A Meta-Analysis of Transcriptomics Reveals a Stage-Specific Transcriptional Response Shared Across Different Hosts. G3 (Bethesda, Md.)
Czaja W, Bensasson D, Ahn HW, et al. (2020) Evolution of Ty1 copy number control in yeast by horizontal transfer and recombination. Plos Genetics. 16: e1008632
Hemmer LW, Dias GB, Smith B, et al. (2020) Hybrid dysgenesis in results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered. Mobile Dna. 11: 10
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