Casey Bergman

Affiliations: 
University of Georgia, Athens, Athens, GA 
Area:
evolution, genomics, noncoding DNA
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"Casey Bergman"
Cross-listing: Evolution Tree - Computational Biology Tree

Parents

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Charles Aquadro research assistant 1995-1996 Cornell
Martin Kreitman grad student 1996-2001 Chicago
 (Evolutionary analyses of transcriptional control sequences in Drosophila.)
Susan Celniker post-doc 2001-2003 LBNL
Michael Ashburner post-doc 2003-2005 Cambridge

Children

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Raquel Linheiro grad student 2007-2011 University of Manchester
Martin Gerner grad student 2008-2011 University of Manchester (Computational Biology Tree)
Pedro Olivares Chauvet grad student 2008-2012 University of Manchester (Computational Biology Tree)
Dave T. Gerrard post-doc 2009-2011 University of Manchester (Evolution Tree)
Maximillian Haeussler post-doc 2009-2011 University of Manchester (Computational Biology Tree)

Collaborators

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Michael Ludwig collaborator 1996-2001 Chicago
Manolis Dermitzakis collaborator 2000-2003 Penn State
Daniel Avery Pollard collaborator 2001-2004 LBNL (Evolution Tree)
Dmitri Petrov collaborator 2002-2005 LBNL
Hadi Quesneville collaborator 2003-2007 Université Pierre et Marie Curie – Paris VI
David H. Ardell collaborator 2004-2007 Uppsala (Computational Biology Tree)
Thomas Down collaborator 2004-2007 The Wellcome Trust Sanger Institute (Computational Biology Tree)
Jose M. Ranz collaborator 2004-2007 Cambridge
Stein Aerts collaborator 2006-2008 KU Leuven
Douda Bensasson collaborator 2005-2009 University of Manchester (Evolution Tree)
Andy Clark collaborator 2000-2010 Cornell University
Sam Griffiths-Jones collaborator 2006-2010 University of Manchester (Computational Biology Tree)
Goran Nenadic collaborator 2006-2011 University of Manchester (Computational Biology Tree)
BETA: Related publications

Publications

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Nelson MG, Linheiro RS, Bergman CM. (2017) McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole Genome Shotgun Sequencing Data. G3 (Bethesda, Md.)
Barsh GS, Bergman CM, Brown CD, et al. (2016) Bringing PLOS Genetics Editors to Preprint Servers. Plos Genetics. 12: e1006448
Miller DE, Cook KR, Yeganeh Kazemi N, et al. (2016) Rare recombination events generate sequence diversity among balancer chromosomes in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America
Rahman R, Chirn GW, Kanodia A, et al. (2015) Unique transposon landscapes are pervasive across Drosophila melanogaster genomes. Nucleic Acids Research
Gutzwiller F, Carmo CR, Miller DE, et al. (2015) Dynamics of Wolbachia pipientis Gene Expression Across the Drosophila melanogaster Life Cycle. G3 (Bethesda, Md.)
Dudzic JP, Kondo S, Ueda R, et al. (2015) Drosophila innate immunity: regional and functional specialization of prophenoloxidases. Bmc Biology. 13: 81
Bergman CM, Haddrill PR. (2015) Strain-specific and pooled genome sequences for populations of Drosophila melanogaster from three continents. F1000research. 4: 31
Kim KE, Peluso P, Babayan P, et al. (2014) Long-read, whole-genome shotgun sequence data for five model organisms. Scientific Data. 1: 140045
Blumenstiel JP, Chen X, He M, et al. (2014) An age-of-allele test of neutrality for transposable element insertions. Genetics. 196: 523-38
Prokop A, Bergman CM. (2013) Photogenic flies-A review of chyb and gompel's atlas of drosophila morphology: Wild-type and classical mutants Frontiers in Genetics. 4
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