Casey Bergman

Affiliations: 
University of Georgia, Athens, Athens, GA 
Area:
evolution, genomics, noncoding DNA
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"Casey Bergman"
Cross-listing: Evolution Tree - Computational Biology Tree

Parents

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Charles Aquadro research assistant 1995-1996 Cornell
Martin Kreitman grad student 1996-2001 Chicago
 (Evolutionary analyses of transcriptional control sequences in Drosophila.)
Susan Celniker post-doc 2001-2003 LBNL
Michael Ashburner post-doc 2003-2005 Cambridge

Children

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Raquel Linheiro grad student 2007-2011 University of Manchester
Martin Gerner grad student 2008-2011 University of Manchester (Computational Biology Tree)
Pedro Olivares Chauvet grad student 2008-2012 University of Manchester (Computational Biology Tree)
Dave T. Gerrard post-doc 2009-2011 University of Manchester (Evolution Tree)
Maximillian Haeussler post-doc 2009-2011 University of Manchester (Computational Biology Tree)

Collaborators

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Michael Ludwig collaborator 1996-2001 Chicago
Manolis Dermitzakis collaborator 2000-2003 Penn State
Daniel Avery Pollard collaborator 2001-2004 LBNL (Evolution Tree)
Dmitri Petrov collaborator 2002-2005 LBNL
Hadi Quesneville collaborator 2003-2007 Université Pierre et Marie Curie – Paris VI
David H. Ardell collaborator 2004-2007 Uppsala (Computational Biology Tree)
Thomas Down collaborator 2004-2007 The Wellcome Trust Sanger Institute (Computational Biology Tree)
Jose M. Ranz collaborator 2004-2007 Cambridge
Stein Aerts collaborator 2006-2008 KU Leuven
Douda Bensasson collaborator 2005-2009 University of Manchester (Evolution Tree)
Andy Clark collaborator 2000-2010 Cornell
Sam Griffiths-Jones collaborator 2006-2010 University of Manchester (Computational Biology Tree)
Goran Nenadic collaborator 2006-2011 University of Manchester (Computational Biology Tree)
BETA: Related publications

Publications

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Gerner M, Sarafraz F, Bergman CM, et al. (2012) BioContext: an integrated text mining system for large-scale extraction and contextualization of biomolecular events. Bioinformatics (Oxford, England). 28: 2154-61
Linheiro RS, Bergman CM. (2012) Whole genome resequencing reveals natural target site preferences of transposable elements in Drosophila melanogaster. Plos One. 7: e30008
Gerner M, Nenadic G, Bergman CM. (2010) LINNAEUS: a species name identification system for biomedical literature. Bmc Bioinformatics. 11: 85
Bergman CM, Bensasson D. (2007) Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster. Proceedings of the National Academy of Sciences of the United States of America. 104: 11340-5
Bergman CM, Quesneville H, Anxolabéhère D, et al. (2006) Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biology. 7: R112
Ashburner M, Bergman CM. (2005) Drosophila melanogaster: a case study of a model genomic sequence and its consequences. Genome Research. 15: 1661-7
Quesneville H, Bergman CM, Andrieu O, et al. (2005) Combined evidence annotation of transposable elements in genome sequences. Plos Computational Biology. 1: 166-75
Ludwig MZ, Bergman C, Patel NH, et al. (2000) Evidence for stabilizing selection in a eukaryotic enhancer element. Nature. 403: 564-7
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