David Begun
Affiliations: | Department of Evolution and Ecology | University of California, Davis, Davis, CA |
Area:
Evolutionary Genetics, population geneticsWebsite:
http://biosci2.ucdavis.edu/BioSci/FacultyAndResearch/DisplayFacultyProfile.cfm?ResearcherID=1694Google:
"David Begun"Bio:
DJB was born in Borough Park, Brooklyn and raised in Sheepshead Bay, Brooklyn. He attended Stuyvesant High School, Brandeis University, Arizona State University, and Cornell University. He was on the faculty at UT-Austin from 1996-2000 and since then at UC Davis.
Cross-listing: Evolution Tree
Parents
Sign in to add mentor| Charles F. Aquadro | grad student | 1990-1994 | Cornell |
| Charles (Chuck) H. Langley | post-doc | 1994-1996 | UC Davis |
Children
Sign in to add trainee| Giovanni Hanna | grad student | UC Davis | |
| Todd A. Schlenke | grad student | 1997-2001 | UT Austin |
| Mara K. Lawniczak | grad student | 2004 | UC Davis |
| Bradley J. Wagstaff | grad student | 2004 | UT Austin (Neurotree) |
| Andrew D. Kern | grad student | 2000-2005 | UC Davis |
| Thomas L. Turner | grad student | 2003-2008 | UC Davis |
| Mia T. Levine | grad student | 2009 | UC Davis |
| Alisa Sedghifar | grad student | 2010-2015 | UC Davis (Evolution Tree) |
| Didem Sarikaya | post-doc | UC Davis | |
| Li Zhao | post-doc | UC Davis | |
| Nicolas Svetec | post-doc | 2011- | UC Davis (Evolution Tree) |
| Corbin D. Jones | post-doc | 2000-2004 | UC Davis |
| Alisha K. Holloway | post-doc | 2005-2008 | UC Davis (Evolution Tree) |
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Publications
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| Thompson A, May MR, Hopkins BR, et al. (2025) Quantifying Transcriptome Turnover on Phylogenies by Modeling Gene Expression as a Binary Trait. Molecular Biology and Evolution. 42 |
| Blair L, Cridland J, Luo Y, et al. (2025) Improved sampling of genotypes and species reveals new insights on de novo gene history and regulatory origins. Genetics |
| Cridland JM, Polston ES, Begun DJ. (2025) New perspectives on Drosophila melanogaster de novo gene origination revealed by investigation of ancient African genetic variation. Genetics |
| Zhao L, Svetec N, Begun DJ. (2024) De Novo Genes. Annual Review of Genetics |
| Majane AC, Cridland JM, Blair LK, et al. (2024) Evolution and genetics of accessory gland transcriptome divergence between Drosophila melanogaster and D. simulans. Genetics |
| Lombardo KD, Sheehy HK, Cridland JM, et al. (2023) Identifying candidate de novo genes expressed in the somatic female reproductive tract of Drosophila melanogaster. G3 (Bethesda, Md.) |
| Lombardo KD, Sheehy HK, Cridland JM, et al. (2023) Identifying candidate genes expressed in the somatic female reproductive tract of . Biorxiv : the Preprint Server For Biology |
| Cridland JM, Contino CE, Begun DJ. (2023) Selection and Geography Shape Male Reproductive Tract Transcriptomes in Drosophila Melanogaster. Genetics |
| Cridland JM, Majane AC, Zhao L, et al. (2021) Population biology of accessory gland-expressed de novo genes in Drosophila melanogaster. Genetics |
| Sarikaya DP, Rickelton K, Cridland JM, et al. (2021) Sex and tissue-specific evolution of developmental plasticity in . Ecology and Evolution. 11: 1334-1341 |