John Reinitz

Affiliations: 
Stony Brook University, Stony Brook, NY, United States 
Area:
segment determination, transcriptional regulation
Website:
http://flyex.ams.sunysb.edu/
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"John Reinitz"

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King-Wai Chu grad student 2001 SUNY Stony Brook
Lorraine Greenwald grad student 2003 SUNY Stony Brook
Johannes Jaeger grad student 2000-2005 SUNY Stony Brook
Christopher N. Marai grad student 2010 SUNY Stony Brook
Yu F. Wu grad student 2011 SUNY Stony Brook
Ah-Ram Kim grad student 2012 SUNY Stony Brook
Lena Panok grad student 2013 SUNY Stony Brook
Pengyao Jiang grad student 2010-2017 Chicago
Hilde Janssens post-doc 2003-2005 SUNY Stony Brook
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Publications

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Barr KA, Reinitz J. (2018) Correction: A sequence level model of an intact locus predicts the location and function of nonadditive enhancers. Plos One. 13: e0197211
Barr KA, Martinez C, Moran JR, et al. (2017) Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation. Bmc Systems Biology. 11: 116
Barr KA, Reinitz J. (2017) A sequence level model of an intact locus predicts the location and function of nonadditive enhancers. Plos One. 12: e0180861
Bertolino E, Reinitz J, Manu. (2016) The analysis of novel distal Cebpaenhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification. Developmental Biology
Lou Z, Reinitz J. (2016) Parallel Simulated Annealing Using an Adaptive Resampling Interval. Parallel Computing. 53: 23-31
Jiang P, Ludwig MZ, Kreitman M, et al. (2015) Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster. Developmental Biology
Ramos AF, Hornos JE, Reinitz J. (2015) Gene regulation and noise reduction by coupling of stochastic processes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 020701
Grigoriev D, Reinitz J, Vakulenko S, et al. (2014) Punctuated evolution and robustness in morphogenesis. Bio Systems. 123: 106-13
Martinez C, Rest JS, Kim AR, et al. (2014) Ancestral resurrection of the Drosophila S2E enhancer reveals accessible evolutionary paths through compensatory change. Molecular Biology and Evolution. 31: 903-16
Lee U, Frankenberger C, Yun J, et al. (2013) A prognostic gene signature for metastasis-free survival of triple negative breast cancer patients. Plos One. 8: e82125
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