John Reinitz

Affiliations: 
Stony Brook University, Stony Brook, NY, United States 
Area:
segment determination, transcriptional regulation
Website:
http://flyex.ams.sunysb.edu/
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"John Reinitz"

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King-Wai Chu grad student 2001 SUNY Stony Brook
Lorraine Greenwald grad student 2003 SUNY Stony Brook
Johannes Jaeger grad student 2000-2005 SUNY Stony Brook
Christopher N. Marai grad student 2010 SUNY Stony Brook
Yu F. Wu grad student 2011 SUNY Stony Brook
Ah-Ram Kim grad student 2012 SUNY Stony Brook
Lena Panok grad student 2013 SUNY Stony Brook
Pengyao Jiang grad student 2010-2017 Chicago
Hilde Janssens post-doc 2003-2005 SUNY Stony Brook
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Publications

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Liu Y, Barr K, Reinitz J. (2020) Fully interpretable deep learning model of transcriptional control. Bioinformatics (Oxford, England). 36: i499-i507
Barr K, Reinitz J, Radulescu O. (2019) An in silico analysis of robust but fragile gene regulation links enhancer length to robustness. Plos Computational Biology. 15: e1007497
Reinitz J, Vakulenko S, Grigoriev D, et al. (2019) Adaptation, fitness landscape learning and fast evolution. F1000research. 8: 358
Ramos AF, Reinitz J. (2019) Physical implications of so(2, 1) symmetry in exact solutions for a self-repressing gene. The Journal of Chemical Physics. 151: 041101
Barr KA, Martinez C, Moran JR, et al. (2017) Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation. Bmc Systems Biology. 11: 116
Barr KA, Reinitz J. (2017) A sequence level model of an intact locus predicts the location and function of nonadditive enhancers. Plos One. 12: e0180861
Hope CM, Rebay I, Reinitz J. (2017) DNA Occupancy of Polymerizing Transcription Factors: A Chemical Model of the ETS Family Factor Yan. Biophysical Journal. 112: 180-192
Bertolino E, Reinitz J, Manu. (2016) The analysis of novel distal Cebpaenhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification. Developmental Biology
Lee U, Skinner JJ, Reinitz J, et al. (2015) Noise-Driven Phenotypic Heterogeneity with Finite Correlation Time in Clonal Populations. Plos One. 10: e0132397
Jiang P, Ludwig MZ, Kreitman M, et al. (2015) Natural variation of the expression pattern of the segmentation gene even-skipped in melanogaster. Developmental Biology
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