Daehwan Kim
Affiliations: | 2013 | University of Maryland, College Park, College Park, MD |
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Parents
Sign in to add mentor| Steven Salzberg | grad student | 2013 | University of Maryland |
| Steven Salzberg | post-doc | 2013-2017 | Johns Hopkins |
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Publications
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| Wang X, Li Y, Liu A, et al. (2023) Endocytosis gated by emergent properties of membrane-clathrin interactions. Biorxiv : the Preprint Server For Biology |
| Kim D, Paggi JM, Park C, et al. (2019) Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nature Biotechnology. 37: 907-915 |
| Pallavajjala A, Kim D, Li T, et al. (2017) Genomic characterization of chromosome translocations in patients with T/myeloid mixed-phenotype acute leukemia. Leukemia & Lymphoma. 1-8 |
| Sun Z, Ke X, Salzberg SL, et al. (2017) The novel fusion transcript NR5A2-KLHL29FT is generated by an insertion at the KLHL29 locus. Cancer |
| Kim D, Song L, Breitwieser FP, et al. (2016) Centrifuge: rapid and sensitive classification of metagenomic sequences. Genome Research |
| Pertea M, Kim D, Pertea GM, et al. (2016) Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nature Protocols. 11: 1650-1667 |
| Kim D, Langmead B, Salzberg SL. (2015) HISAT: a fast spliced aligner with low memory requirements. Nature Methods. 12: 357-60 |
| Trapnell C, Roberts A, Goff L, et al. (2014) Erratum: Corrigendum: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Nature Protocols. 9: 2513-2513 |
| Kim D, Pertea G, Trapnell C, et al. (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biology. 14: R36 |
| Trapnell C, Roberts A, Goff L, et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nature Protocols. 7: 562-78 |