Lara Shayne Collier - Publications

Affiliations: 
2003 Stanford University, Palo Alto, CA 

5/53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Morrissy AS, Garzia L, Shih DJ, Zuyderduyn S, Huang X, Skowron P, Remke M, Cavalli FM, Ramaswamy V, Lindsay PE, Jelveh S, Donovan LK, Wang X, Luu B, Zayne K, ... ... Collier LS, et al. Divergent clonal selection dominates medulloblastoma at recurrence. Nature. PMID 26760213 DOI: 10.1038/Nature16478  0.34
2012 Pérez-Mancera PA, Rust AG, van der Weyden L, Kristiansen G, Li A, Sarver AL, Silverstein KA, Grützmann R, Aust D, Rümmele P, Knösel T, Herd C, Stemple DL, Kettleborough R, Brosnan JA, ... ... Collier LS, et al. The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma. Nature. 486: 266-70. PMID 22699621 DOI: 10.1038/Nature11114  0.319
2004 Collier LS, Suyama K, Anderson JH, Scott MP. Drosophila Costal1 mutations are alleles of protein kinase A that modulate hedgehog signaling. Genetics. 167: 783-96. PMID 15238528 DOI: 10.1534/Genetics.103.024992  0.419
1999 Pearse RV, Collier LS, Scott MP, Tabin CJ. Vertebrate homologs of Drosophila suppressor of fused interact with the gli family of transcriptional regulators. Developmental Biology. 212: 323-36. PMID 10433824 DOI: 10.1006/Dbio.1999.9335  0.415
1998 Schaeffer HJ, Catling AD, Eblen ST, Collier LS, Krauss A, Weber MJ. MP1: a MEK binding partner that enhances enzymatic activation of the MAP kinase cascade. Science (New York, N.Y.). 281: 1668-71. PMID 9733512 DOI: 10.1126/Science.281.5383.1668  0.304
Low-probability matches (unlikely to be authored by this person)
2006 Collier LS, Largaespada DA. Transforming science: cancer gene identification. Current Opinion in Genetics & Development. 16: 23-9. PMID 16326095 DOI: 10.1016/J.Gde.2005.11.001  0.29
2009 Collier LS, Adams DJ, Hackett CS, Bendzick LE, Akagi K, Davies MN, Diers MD, Rodriguez FJ, Bender AM, Tieu C, Matise I, Dupuy AJ, Copeland NG, Jenkins NA, Hodgson JG, et al. Whole-body sleeping beauty mutagenesis can cause penetrant leukemia/lymphoma and rare high-grade glioma without associated embryonic lethality. Cancer Research. 69: 8429-37. PMID 19843846 DOI: 10.1158/0008-5472.Can-09-1760  0.29
2012 Bergerson RJ, Collier LS, Sarver AL, Been RA, Lugthart S, Diers MD, Zuber J, Rappaport AR, Nixon MJ, Silverstein KA, Fan D, Lamblin AF, Wolff L, Kersey JH, Delwel R, et al. An insertional mutagenesis screen identifies genes that cooperate with Mll-AF9 in a murine leukemogenesis model. Blood. 119: 4512-23. PMID 22427200 DOI: 10.1182/Blood-2010-04-281428  0.278
2010 Mattison J, Kool J, Uren AG, de Ridder J, Wessels L, Jonkers J, Bignell GR, Butler A, Rust AG, Brosch M, Wilson CH, van der Weyden L, Largaespada DA, Stratton MR, Futreal PA, ... Collier LS, et al. Novel candidate cancer genes identified by a large-scale cross-species comparative oncogenomics approach. Cancer Research. 70: 883-95. PMID 20103622 DOI: 10.1158/0008-5472.Can-09-1737  0.274
1998 Collier LS, Gaines GL, Neidle EL. Regulation of benzoate degradation in Acinetobacter sp. strain ADP1 by BenM, a LysR-type transcriptional activator. Journal of Bacteriology. 180: 2493-501. PMID 9573203 DOI: 10.1128/Jb.180.9.2493-2501.1998  0.272
2014 Vyazunova I, Maklakova VI, Berman S, De I, Steffen MD, Hong W, Lincoln H, Morrissy AS, Taylor MD, Akagi K, Brennan CW, Rodriguez FJ, Collier LS. Sleeping Beauty mouse models identify candidate genes involved in gliomagenesis. Plos One. 9: e113489. PMID 25423036 DOI: 10.1371/Journal.Pone.0113489  0.267
2005 Collier LS, Carlson CM, Ravimohan S, Dupuy AJ, Largaespada DA. Cancer gene discovery in solid tumours using transposon-based somatic mutagenesis in the mouse. Nature. 436: 272-6. PMID 16015333 DOI: 10.1038/Nature03681  0.261
2009 Starr TK, Allaei R, Silverstein KA, Staggs RA, Sarver AL, Bergemann TL, Gupta M, O'Sullivan MG, Matise I, Dupuy AJ, Collier LS, Powers S, Oberg AL, Asmann YW, Thibodeau SN, et al. A transposon-based genetic screen in mice identifies genes altered in colorectal cancer. Science (New York, N.Y.). 323: 1747-50. PMID 19251594 DOI: 10.1126/Science.1163040  0.26
2009 Bergerson RJ, Collier LS, Lugthart S, Allaei R, Nixon MJ, Silverstein KA, Sarver A, Fan DF, Lamblin AJ, Wolff L, Kersey JH, O'Sullivan MG, Delwel R, Kogan SC, Adams DJ, et al. An Insertional Mutagenesis Screen for Genes That Cooperate with Mll-AF9 in Leukemogenesis. Blood. 114: 3962-3962. DOI: 10.1182/Blood.V114.22.3962.3962  0.258
2008 Largaespada DA, Collier LS. Transposon-mediated mutagenesis in somatic cells: identification of transposon-genomic DNA junctions. Methods in Molecular Biology (Clifton, N.J.). 435: 95-108. PMID 18370070 DOI: 10.1007/978-1-59745-232-8_7  0.252
2006 Geurts AM, Collier LS, Geurts JL, Oseth LL, Bell ML, Mu D, Lucito R, Godbout SA, Green LE, Lowe SW, Hirsch BA, Leinwand LA, Largaespada DA. Gene mutations and genomic rearrangements in the mouse as a result of transposon mobilization from chromosomal concatemers. Plos Genetics. 2: e156. PMID 17009875 DOI: 10.1371/Journal.Pgen.0020156  0.251
2000 Cosper NJ, Collier LS, Clark TJ, Scott RA, Neidle EL. Mutations in catB, the gene encoding muconate cycloisomerase, activate transcription of the distal ben genes and contribute to a complex regulatory circuit in Acinetobacter sp. strain ADP1. Journal of Bacteriology. 182: 7044-52. PMID 11092867 DOI: 10.1128/Jb.182.24.7044-7052.2000  0.249
2005 Collier LS, Largaespada DA. Hopping around the tumor genome: transposons for cancer gene discovery. Cancer Research. 65: 9607-10. PMID 16266976 DOI: 10.1158/0008-5472.Can-05-3085  0.234
2002 Bundy BM, Collier LS, Hoover TR, Neidle EL. Synergistic transcriptional activation by one regulatory protein in response to two metabolites. Proceedings of the National Academy of Sciences of the United States of America. 99: 7693-8. PMID 12032345 DOI: 10.1073/Pnas.102605799  0.223
2012 Bagley BN, Keane TM, Maklakova VI, Marshall JG, Lester RA, Cancel MM, Paulsen AR, Bendzick LE, Been RA, Kogan SC, Cormier RT, Kendziorski C, Adams DJ, Collier LS. A dominantly acting murine allele of Mcm4 causes chromosomal abnormalities and promotes tumorigenesis. Plos Genetics. 8: e1003034. PMID 23133403 DOI: 10.1371/Journal.Pgen.1003034  0.222
2021 Boyd MM, Litscher SJ, Seitz LL, Messing A, Hagemann TL, Collier LS. Pexidartinib treatment in Alexander disease model mice reduces macrophage numbers and increases glial fibrillary acidic protein levels, yet has minimal impact on other disease phenotypes. Journal of Neuroinflammation. 18: 67. PMID 33685480 DOI: 10.1186/s12974-021-02118-x  0.216
2014 Sukup-Jackson MR, Kiraly O, Kay JE, Na L, Rowland EA, Winther KE, Chow DN, Kimoto T, Matsuguchi T, Jonnalagadda VS, Maklakova VI, Singh VR, Wadduwage DN, Rajapakse J, So PT, ... Collier LS, et al. Rosa26-GFP direct repeat (RaDR-GFP) mice reveal tissue- and age-dependence of homologous recombination in mammals in vivo. Plos Genetics. 10: e1004299. PMID 24901438 DOI: 10.1371/journal.pgen.1004299  0.214
2009 Keng VW, Villanueva A, Chiang DY, Dupuy AJ, Ryan BJ, Matise I, Silverstein KA, Sarver A, Starr TK, Akagi K, Tessarollo L, Collier LS, Powers S, Lowe SW, Jenkins NA, et al. A conditional transposon-based insertional mutagenesis screen for genes associated with mouse hepatocellular carcinoma. Nature Biotechnology. 27: 264-74. PMID 19234449 DOI: 10.1038/Nbt.1526  0.213
2010 Bender AM, Collier LS, Rodriguez FJ, Tieu C, Larson JD, Halder C, Mahlum E, Kollmeyer TM, Akagi K, Sarkar G, Largaespada DA, Jenkins RB. Sleeping beauty-mediated somatic mutagenesis implicates CSF1 in the formation of high-grade astrocytomas. Cancer Research. 70: 3557-65. PMID 20388773 DOI: 10.1158/0008-5472.Can-09-4674  0.213
2007 Bergerson RJ, Collier LS, Allaei R, Silverstein KA, Lamblin AF, Wolff L, Kogan SC, Kersey JH, Adams DJ, Largaespada DA. Novel Mll-AF9 Cooperating Genes Identified in a Leukemogenesis Screen Using Retroviral Mutagenesis. Blood. 110: 825-825. DOI: 10.1182/Blood.V110.11.825.825  0.204
2006 Bergerson RJ, Collier LS, Cox T, Hudson WA, Allaei R, Wolff L, Kersey JH, Adams DJ, Largaespada DA. A Screen for Mll-AF9 Cooperating Mutations in Leukemogenesis Using MLV-Based Mutagenesis. Blood. 108: 1417-1417. DOI: 10.1182/Blood.V108.11.1417.1417  0.188
2006 Geurts AM, Hackett CS, Bell JB, Bergemann TL, Collier LS, Carlson CM, Largaespada DA, Hackett PB. Structure-based prediction of insertion-site preferences of transposons into chromosomes. Nucleic Acids Research. 34: 2803-11. PMID 16717285 DOI: 10.1093/Nar/Gkl301  0.181
1997 Collier LS, Nichols NN, Neidle EL. benK encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1. Journal of Bacteriology. 179: 5943-6. PMID 9294456 DOI: 10.1128/Jb.179.18.5943-5946.1997  0.169
1999 Jones RM, Collier LS, Neidle EL, Williams PA. areABC genes determine the catabolism of aryl esters in Acinetobacter sp. Strain ADP1. Journal of Bacteriology. 181: 4568-75. PMID 10419955 DOI: 10.1128/Jb.181.15.4568-4575.1999  0.166
2006 Geurts AM, Hackett CS, Bell JB, Bergemann TL, Collier LS, Carlson CM, Largaespada DA, Hackett PB. 520. ProTIS, a Method for Prediction of Insertion-Site Preferences into Chromosomes of Vectors Used for Gene Therapy Molecular Therapy. 13: S200. DOI: 10.1016/J.Ymthe.2006.08.591  0.163
2009 Rahrmann EP, Collier LS, Knutson TP, Doyal ME, Kuslak SL, Green LE, Malinowski RL, Roethe L, Akagi K, Waknitz M, Huang W, Largaespada DA, Marker PC. Identification of PDE4D as a proliferation promoting factor in prostate cancer using a Sleeping Beauty transposon-based somatic mutagenesis screen. Cancer Research. 69: 4388-97. PMID 19401450 DOI: 10.1158/0008-5472.Can-08-3901  0.153
2012 Wu X, Northcott PA, Dubuc A, Dupuy AJ, Shih DJ, Witt H, Croul S, Bouffet E, Fults DW, Eberhart CG, Garzia L, Van Meter T, Zagzag D, Jabado N, Schwartzentruber J, ... ... Collier LS, et al. Clonal selection drives genetic divergence of metastatic medulloblastoma. Nature. 482: 529-33. PMID 22343890 DOI: 10.1038/Nature10825  0.153
2014 De I, Nikodemova M, Steffen MD, Sokn E, Maklakova VI, Watters JJ, Collier LS. CSF1 overexpression has pleiotropic effects on microglia in vivo. Glia. 62: 1955-67. PMID 25042473 DOI: 10.1002/glia.22717  0.152
2000 Buchan A, Collier LS, Neidle EL, Moran MA. Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage. Applied and Environmental Microbiology. 66: 4662-72. PMID 11055908 DOI: 10.1128/Aem.66.11.4662-4672.2000  0.15
2023 Stangis MM, Colah AN, McLean DT, Halberg RB, Collier LS, Ricke WA. Potential roles of FGF5 as a candidate therapeutic target in prostate cancer. American Journal of Clinical and Experimental Urology. 11: 452-466. PMID 38148937  0.138
2007 Collier LS, Largaespada DA. Transposons for cancer gene discovery: Sleeping Beauty and beyond. Genome Biology. 8: S15. PMID 18047692 DOI: 10.1186/Gb-2007-8-S1-S15  0.136
2016 De I, Steffen MD, Clark PA, Patros CJ, Sokn E, Bishop SM, Litscher S, Maklakova VI, Kuo JS, Rodriguez FJ, Collier LS. CSF1 overexpression promotes high-grade glioma formation without impacting the polarization status of glioma-associated microglia and macrophages. Cancer Research. PMID 27013192 DOI: 10.1158/0008-5472.Can-15-2386  0.13
2007 Thielen JL, Volzing KG, Collier LS, Green LE, Largaespada DA, Marker PC. Markers of prostate region-specific epithelial identity define anatomical locations in the mouse prostate that are molecularly similar to human prostate cancers. Differentiation; Research in Biological Diversity. 75: 49-61. PMID 17244021 DOI: 10.1111/J.1432-0436.2006.00115.X  0.124
2013 Pérez-Mancera PA, Rust AG, van der Weyden L, Kristiansen G, Li A, Sarver AL, Silverstein KAT, Grützmann R, Aust D, Rümmele P, Knösel T, Herd C, Stemple DL, Kettleborough R, Brosnan JA, ... ... Collier LS, et al. Erratum: Corrigendum: The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma Nature. 494: 390-390. DOI: 10.1038/Nature11864  0.124
2015 Nikodemova M, Kimyon RS, De I, Small AL, Collier LS, Watters JJ. Microglial numbers attain adult levels after undergoing a rapid decrease in cell number in the third postnatal week. Journal of Neuroimmunology. 278: 280-8. PMID 25468773 DOI: 10.1016/j.jneuroim.2014.11.018  0.116
2007 Collier LS, Largaespada DA. Transposable elements and the dynamic somatic genome. Genome Biology. 8: S5. PMID 18047697 DOI: 10.1186/Gb-2007-8-S1-S5  0.108
2021 De I, Maklakova V, Litscher S, Boyd MM, Klemm LC, Wang Z, Kendziorski C, Collier LS. Microglial responses to CSF1 overexpression do not promote the expansion of other glial lineages. Journal of Neuroinflammation. 18: 162. PMID 34281564 DOI: 10.1186/s12974-021-02212-0  0.105
2012 Elmendorf SC, Henry GH, Hollister RD, Björk RG, Bjorkman AD, Callaghan TV, Collier LS, Cooper EJ, Cornelissen JH, Day TA, Fosaa AM, Gould WA, Grétarsdóttir J, Harte J, Hermanutz L, et al. Global assessment of experimental climate warming on tundra vegetation: heterogeneity over space and time. Ecology Letters. 15: 164-75. PMID 22136670 DOI: 10.1111/J.1461-0248.2011.01716.X  0.045
2008 Gomes LAA, Rodrigues AC, Collier LS, Feitosa SDS. Production of lettuce seedlings using alternative substrates and fertilizer | Produção de mudas de alface em substrato alternativo com adubação Horticultura Brasileira. 26: 359-363. DOI: 10.1590/S0102-05362008000300013  0.041
2012 Flores RA, Urquiaga SS, Alves BJR, Collier LS, de Morais RF, Prado RM. Effect of nitrogen fertilizer and cutting age on the dry matter production of elephant grass in Savana | Adubação nitrogenada e idade de corte na produção de matéria seca do capim-elefante no cerrado Revista Brasileira De Engenharia Agricola E Ambiental. 16: 1282-1288. DOI: 10.1590/S1415-43662012001200004  0.026
2012 Flores RA, Urquiaga S, Alves BJR, Collier LS, Boddey RM. Yield and quality of elephant grass biomass produced in the cerrados region for bioenergy Engenharia Agricola. 32: 831-839. DOI: 10.1590/S0100-69162012000500003  0.024
2011 Myers-Smith IH, Forbes BC, Wilmking M, Hallinger M, Lantz T, Blok D, Tape KD, MacIas-Fauria M, Sass-Klaassen U, Lévesque E, Boudreau S, Ropars P, Hermanutz L, Trant A, Collier LS, et al. Shrub expansion in tundra ecosystems: Dynamics, impacts and research priorities Environmental Research Letters. 6. DOI: 10.1088/1748-9326/6/4/045509  0.024
2015 Myers-Smith IH, Elmendorf SC, Beck PSA, Wilmking M, Hallinger M, Blok D, Tape KD, Rayback SA, Macias-Fauria M, Forbes BC, Speed JDM, Boulanger-Lapointe N, Rixen C, Lévesque E, Schmidt NM, ... ... Collier LS, et al. Climate sensitivity of shrub growth across the tundra biome Nature Climate Change. 5: 887-891. DOI: 10.1038/Nclimate2697  0.021
2014 Flores RA, Collier LS, dos Santos CLR, Borges BMMN, Moda LR, da Silva ÁR. Andropogon grass consortium with stylo in two times: The forage response and sources of phosphorus rates | Consórcio de capim andropógon com estilos antes em dois momentos: Resposta da forragem a níveis e fontes de fósforo Bioscience Journal. 30: 824-832.  0.015
2011 Collier LS, Kikuchi FY, Benício LPF, de Sousa SA. Maize and jack beans intercropping and sucession as alternative for no-till system | Consórcio e sucessão de milho e feijão-de-porco como alternativa de cultivo sob plantio direto Pesquisa Agropecuaria Tropical. 41: 306-313.  0.012
2013 Flores RA, Urquiaga S, Alves BJR, Collier LS, Zanetti JB, De Mello Prado R. Nitrogen and age on the quality of elephant grass for agroenergy purpose grown in Oxisol | Nitrogênio e idade de corte na qualidade da biomassa de capimelefante para fins agroenergéticos cultivado em Latossolo Semina:Ciencias Agrarias. 34: 127-136. DOI: 10.5433/1679-0359.2013v34n1p127  0.01
2011 Sugai MAA, Collier LS, Saggin-Júnior OJ. Mycorrhizal inoculation on angico seedlings growing with soil from cerrado | Inoculação micorrízica no crescimento de mudas de angico em solo de cerrad Bragantia. 70: 416-423. DOI: 10.1590/S0006-87052011000200024  0.01
2006 Collier LS, Castro DV, Dias Neto JJ, Brito DR, Ribeiro PADA. Nitrogen fertilization management for maize on legume straw crop with no tillage cultivation in Gurupi, Tocantins State | Manejo da adubação nitrogenada para o milho sob palhada de leguminosas em plantio direto em Gurupi, TO Ciencia Rural. 36: 1100-1105. DOI: 10.1590/S0103-84782006000400009  0.01
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