| Year |
Citation |
Score |
| 2024 |
Gopalakrishnan S, Johnson W, Valderrama-Gomez MA, Icten E, Tat J, Ingram M, Fung Shek C, Chan PK, Schlegel F, Rolandi P, Kontoravdi C, Lewis NE. COSMIC-dFBA: A novel multi-scale hybrid framework for bioprocess modeling. Metabolic Engineering. PMID 38387677 DOI: 10.1016/j.ymben.2024.02.012 |
0.314 |
|
| 2023 |
Masson HO, Samoudi M, Robinson CM, Kuo CC, Weiss L, Shams Ud Doha K, Campos A, Tejwani V, Dahodwala H, Menard P, Voldborg BG, Robasky B, Sharfstein ST, Lewis NE. Inferring secretory and metabolic pathway activity from omic data with secCellFie. Metabolic Engineering. PMID 38145748 DOI: 10.1016/j.ymben.2023.12.006 |
0.323 |
|
| 2023 |
Kim SH, Shin S, Baek M, Xiong K, Karottki KJC, Hefzi H, Grav LM, Pedersen LE, Kildegaard HF, Lewis NE, Lee JS, Lee GM. Identification of hyperosmotic stress-responsive genes in Chinese hamster ovary cells via genome-wide virus-free CRISPR/Cas9 screening. Metabolic Engineering. PMID 37709005 DOI: 10.1016/j.ymben.2023.09.006 |
0.795 |
|
| 2023 |
Rocamora F, Peralta AG, Shin S, Sorrentino J, Wu M, Toth EA, Fuerst TR, Lewis NE. Glycosylation shapes the efficacy and safety of diverse protein, gene and cell therapies. Biotechnology Advances. 108206. PMID 37354999 DOI: 10.1016/j.biotechadv.2023.108206 |
0.769 |
|
| 2023 |
Aamodt CM, Lewis NE. Single-cell A/B testing for cell-cell communication. Cell Systems. 14: 428-429. PMID 37348460 DOI: 10.1016/j.cels.2023.05.006 |
0.791 |
|
| 2023 |
Masson HO, Samoudi M, Robinson CM, Kuo CC, Weiss L, Ud Doha KS, Campos A, Tejwani V, Dahodwala H, Menard P, Voldborg BG, Sharfstein ST, Lewis NE. Inferring secretory and metabolic pathway activity from omic data with secCellFie. Biorxiv : the Preprint Server For Biology. PMID 37205389 DOI: 10.1101/2023.05.04.539316 |
0.324 |
|
| 2023 |
Masson HO, Karottki KJC, Tat J, Hefzi H, Lewis NE. From observational to actionable: rethinking omics in biologics production. Trends in Biotechnology. PMID 37062598 DOI: 10.1016/j.tibtech.2023.03.009 |
0.735 |
|
| 2023 |
Zhang Y, Krishnan S, Bao B, Chiang AWT, Sorrentino JT, Schinn SM, Kellman BP, Lewis NE. Preparing glycomics data for robust statistical analysis with GlyCompareCT. Star Protocols. 4: 102162. PMID 36920914 DOI: 10.1016/j.xpro.2023.102162 |
0.768 |
|
| 2023 |
Masson HO, Borland D, Reilly J, Telleria A, Shrivastava S, Watson M, Bustillos L, Li Z, Capps L, Kellman BP, King ZA, Richelle A, Lewis NE, Robasky K. ImmCellFie: A user-friendly web-based platform to infer metabolic function from omics data. Star Protocols. 4: 102069. PMID 36853701 DOI: 10.1016/j.xpro.2023.102069 |
0.733 |
|
| 2022 |
Ha TK, Òdena A, Karottki KJC, Kim CL, Hefzi H, Lee GM, Faustrup Kildegaard H, Nielsen LK, Grav LM, Lewis NE. Enhancing CHO cell productivity through a dual selection system using Aspg and Gs in glutamine free medium. Biotechnology and Bioengineering. PMID 36562657 DOI: 10.1002/bit.28318 |
0.765 |
|
| 2022 |
Bao B, Zahiri J, Gazestani VH, Lopez L, Xiao Y, Kim R, Wen TH, Chiang AWT, Nalabolu S, Pierce K, Robasky K, Wang T, Hoekzema K, Eichler EE, Lewis NE, et al. A predictive ensemble classifier for the gene expression diagnosis of ASD at ages 1 to 4 years. Molecular Psychiatry. PMID 36266569 DOI: 10.1038/s41380-022-01826-x |
0.485 |
|
| 2022 |
Sorrentino JT, Golden GJ, Morris C, Painter CD, Nizet V, Campos AR, Smith JW, Karlsson C, Malmström J, Lewis NE, Esko JD, Gómez Toledo A. Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia. Msystems. e0039522. PMID 35913192 DOI: 10.1128/msystems.00395-22 |
0.768 |
|
| 2022 |
Armingol E, Baghdassarian HM, Martino C, Perez-Lopez A, Aamodt C, Knight R, Lewis NE. Context-aware deconvolution of cell-cell communication with Tensor-cell2cell. Nature Communications. 13: 3665. PMID 35760817 DOI: 10.1038/s41467-022-31369-2 |
0.784 |
|
| 2022 |
Kellman BP, Richelle A, Yang JY, Chapla D, Chiang AWT, Najera JA, Liang C, Fürst A, Bao B, Koga N, Mohammad MA, Bruntse AB, Haymond MW, Moremen KW, Bode L, ... Lewis NE, et al. Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multi-omics integration. Nature Communications. 13: 2455. PMID 35508452 DOI: 10.1038/s41467-022-29867-4 |
0.716 |
|
| 2022 |
Joshi CJ, Schinn SM, Richelle A, Shamie I, O'Rourke EJ, Lewis NE. Correction: StanDep: Capturing transcriptomic variability improves context-specific metabolic models. Plos Computational Biology. 18: e1009776. PMID 35007280 DOI: 10.1371/journal.pcbi.1009776 |
0.713 |
|
| 2022 |
Xiao Y, Wen TH, Kupis L, Eyler LT, Goel D, Vaux K, Lombardo MV, Lewis NE, Pierce K, Courchesne E. Neural responses to affective speech, including motherese, map onto clinical and social eye tracking profiles in toddlers with ASD. Nature Human Behaviour. PMID 34980898 DOI: 10.1038/s41562-021-01237-y |
0.425 |
|
| 2021 |
Xiong K, Karottki KJC, Hefzi H, Li S, Grav LM, Li S, Spahn P, Lee JS, Ventina I, Lee GM, Lewis NE, Kildegaard HF, Pedersen LE. Erratum: An optimized genome-wide, virus-free CRISPR screen for mammalian cells. Cell Reports Methods. 1: 100115. PMID 35475003 DOI: 10.1016/j.crmeth.2021.100115 |
0.786 |
|
| 2021 |
Spahn PN, Zhang X, Hu Q, Lu H, Hamaker NK, Hefzi H, Li S, Kuo CC, Huang Y, Lee JC, Davis AJ, Ly P, Lee KH, Lewis NE. Restoration of DNA Repair Mitigates Genome Instability and Increases Productivity of Chinese Hamster Ovary Cells. Biotechnology and Bioengineering. PMID 34953085 DOI: 10.1002/bit.28016 |
0.796 |
|
| 2021 |
Xiong K, Karottki KJC, Hefzi H, Li S, Grav LM, Li S, Spahn P, Lee JS, Ventina I, Lee GM, Lewis NE, Kildegaard HF, Pedersen LE. An optimized genome-wide, virus-free CRISPR screen for mammalian cells. Cell Reports Methods. 1. PMID 34935002 DOI: 10.1016/j.crmeth.2021.100062 |
0.799 |
|
| 2021 |
Richelle A, Kellman BP, Wenzel AT, Chiang AWT, Reagan T, Gutierrez JM, Joshi C, Li S, Liu JK, Masson H, Lee J, Li Z, Heirendt L, Trefois C, Juarez EF, ... ... Lewis NE, et al. Model-based assessment of mammalian cell metabolic functionalities using omics data. Cell Reports Methods. 1. PMID 34761247 DOI: 10.1016/j.crmeth.2021.100040 |
0.818 |
|
| 2021 |
Golden GJ, Toledo AG, Marki A, Sorrentino JT, Morris C, Riley RJ, Spliid C, Chen Q, Cornax I, Lewis NE, Varki N, Le D, Malmström J, Karlsson C, Ley K, et al. Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis. Mbio. e0118121. PMID 34544271 DOI: 10.1128/mBio.01181-21 |
0.746 |
|
| 2021 |
Lombardo MV, Eyler L, Pramparo T, Gazestani VH, Hagler DJ, Chen CH, Dale AM, Seidlitz J, Bethlehem RAI, Bertelsen N, Barnes CC, Lopez L, Campbell K, Lewis NE, Pierce K, et al. Atypical genomic cortical patterning in autism with poor early language outcome. Science Advances. 7: eabh1663. PMID 34516910 DOI: 10.1126/sciadv.abh1663 |
0.453 |
|
| 2021 |
Bao B, Kellman BP, Chiang AWT, Zhang Y, Sorrentino JT, York AK, Mohammad MA, Haymond MW, Bode L, Lewis NE. Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis. Nature Communications. 12: 4988. PMID 34404781 DOI: 10.1038/s41467-021-25183-5 |
0.783 |
|
| 2021 |
Shamie I, Duttke SH, Karottki KJC, Han CZ, Hansen AH, Hefzi H, Xiong K, Li S, Roth SJ, Tao J, Lee GM, Glass CK, Kildegaard HF, Benner C, Lewis NE. A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells. Nar Genomics and Bioinformatics. 3: lqab061. PMID 34268494 DOI: 10.1093/nargab/lqab061 |
0.802 |
|
| 2021 |
Chiang AWT, Baghdassarian HM, Kellman BP, Bao B, Sorrentino JT, Liang C, Kuo CC, Masson HO, Lewis NE. Systems glycobiology for discovering drug targets, biomarkers, and rational designs for glyco-immunotherapy. Journal of Biomedical Science. 28: 50. PMID 34158025 DOI: 10.1186/s12929-021-00746-2 |
0.764 |
|
| 2021 |
Karottki KJC, Hefzi H, Li S, Pedersen LE, Spahn PN, Joshi C, Ruckerbauer D, Bort JAH, Thomas A, Lee JS, Borth N, Lee GM, Kildegaard HF, Lewis NE. A metabolic CRISPR-Cas9 screen in Chinese hamster ovary cells identifies glutamine-sensitive genes. Metabolic Engineering. PMID 33813034 DOI: 10.1016/j.ymben.2021.03.017 |
0.823 |
|
| 2021 |
Schinn SM, Morrison C, Wei W, Zhang L, Lewis NE. Systematic evaluation of parameters for genome-scale metabolic models of cultured mammalian cells. Metabolic Engineering. PMID 33771719 DOI: 10.1016/j.ymben.2021.03.013 |
0.359 |
|
| 2021 |
Granados JC, Richelle A, Gutierrez JM, Zhang P, Zhang X, Bhatnagar V, Lewis NE, Nigam SK. \Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3. The Journal of Biological Chemistry. 100575. PMID 33757768 DOI: 10.1016/j.jbc.2021.100575 |
0.788 |
|
| 2021 |
Gómez Toledo A, Sorrentino JT, Sandoval DR, Malmström J, Lewis NE, Esko JD. A Systems View of the Heparan Sulfate Interactome. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 69: 105-119. PMID 33494649 DOI: 10.1369/0022155420988661 |
0.765 |
|
| 2021 |
Kellman BP, Baghdassarian HM, Pramparo T, Shamie I, Gazestani V, Begzati A, Li S, Nalabolu S, Murray S, Lopez L, Pierce K, Courchesne E, Lewis NE. Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing. Bmc Genomics. 22: 69. PMID 33478392 DOI: 10.1186/s12864-021-07381-z |
0.732 |
|
| 2020 |
Kellman BP, Zhang Y, Logomasini E, Meinhardt E, Godinez-Macias KP, Chiang AWT, Sorrentino JT, Liang C, Bao B, Zhou Y, Akase S, Sogabe I, Kouka T, Winzeler EA, Wilson IBH, ... ... Lewis NE, et al. A consensus-based and readable extension of near de for eaction ules (LiCoRR). Beilstein Journal of Organic Chemistry. 16: 2645-2662. PMID 33178355 DOI: 10.3762/bjoc.16.215 |
0.758 |
|
| 2020 |
Fouladiha H, Marashi SA, Li S, Li Z, Masson HO, Vaziri B, Lewis NE. Systematically gap-filling the genome-scale metabolic model of CHO cells. Biotechnology Letters. PMID 33040240 DOI: 10.1007/s10529-020-03021-w |
0.777 |
|
| 2020 |
Martino C, Kellman BP, Sandoval DR, Clausen TM, Marotz CA, Song SJ, Wandro S, Zaramela LS, Salido Benítez RA, Zhu Q, Armingol E, Vázquez-Baeza Y, McDonald D, Sorrentino JT, Taylor B, ... ... Lewis NE, et al. Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity. Biorxiv : the Preprint Server For Biology. PMID 32839779 DOI: 10.1101/2020.08.17.238444 |
0.769 |
|
| 2020 |
Széliová D, Ruckerbauer DE, Galleguillos SN, Petersen LB, Natter K, Hanscho M, Troyer C, Causon T, Schoeny H, Christensen HB, Lee DY, Lewis NE, Koellensperger G, Hann S, Nielsen LK, et al. What CHO is made of: Variations in the biomass composition of Chinese hamster ovary cell lines. Metabolic Engineering. PMID 32619503 DOI: 10.1016/J.Ymben.2020.06.002 |
0.435 |
|
| 2020 |
Ke W, Saba JA, Yao CH, Hilzendeger MA, Drangowska-Way A, Joshi C, Mony VK, Benjamin SB, Zhang S, Locasale J, Patti GJ, Lewis N, O'Rourke EJ. Dietary serine-microbiota interaction enhances chemotherapeutic toxicity without altering drug conversion. Nature Communications. 11: 2587. PMID 32444616 DOI: 10.1038/S41467-020-16220-W |
0.319 |
|
| 2020 |
Joshi CJ, Schinn SM, Richelle A, Shamie I, O'Rourke EJ, Lewis NE. StanDep: Capturing transcriptomic variability improves context-specific metabolic models. Plos Computational Biology. 16: e1007764. PMID 32396573 DOI: 10.1371/Journal.Pcbi.1007764 |
0.766 |
|
| 2020 |
Courchesne E, Gazestani VH, Lewis NE. Prenatal Origins of ASD: The When, What, and How of ASD Development. Trends in Neurosciences. 43: 326-342. PMID 32353336 DOI: 10.1016/J.Tins.2020.03.005 |
0.533 |
|
| 2020 |
Kol S, Ley D, Wulff T, Decker M, Arnsdorf J, Schoffelen S, Hansen AH, Jensen TL, Gutierrez JM, Chiang AWT, Masson HO, Palsson BO, Voldborg BG, Pedersen LE, Kildegaard HF, ... ... Lewis NE, et al. Multiplex secretome engineering enhances recombinant protein production and purity. Nature Communications. 11: 1908. PMID 32313013 DOI: 10.1038/S41467-020-15866-W |
0.799 |
|
| 2020 |
Liang C, Chiang AWT, Hansen AH, Arnsdorf J, Schoffelen S, Sorrentino JT, Kellman BP, Bao B, Voldborg BG, Lewis NE. A Markov model of glycosylation elucidates isozyme specificity and glycosyltransferase interactions for glycoengineering. Current Research in Biotechnology. 2: 22-36. PMID 32285041 DOI: 10.1016/j.crbiot.2020.01.001 |
0.785 |
|
| 2020 |
Weiss RJ, Spahn PN, Toledo AG, Chiang AWT, Kellman BP, Li J, Benner C, Glass CK, Gordts PLSM, Lewis NE, Esko JD. ZNF263 is a transcriptional regulator of heparin and heparan sulfate biosynthesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 32277030 DOI: 10.1073/Pnas.1920880117 |
0.325 |
|
| 2020 |
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, ... ... Lewis NE, et al. Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. 38: 504. PMID 32265554 DOI: 10.1038/S41587-020-0477-4 |
0.797 |
|
| 2020 |
Fouladiha H, Marashi SA, Torkashvand F, Mahboudi F, Lewis NE, Vaziri B. A metabolic network-based approach for developing feeding strategies for CHO cells to increase monoclonal antibody production. Bioprocess and Biosystems Engineering. PMID 32211960 DOI: 10.1007/S00449-020-02332-6 |
0.404 |
|
| 2020 |
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, ... ... Lewis NE, et al. MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. PMID 32123384 DOI: 10.1038/S41587-020-0446-Y |
0.801 |
|
| 2020 |
Gutierrez JM, Feizi A, Li S, Kallehauge TB, Hefzi H, Grav LM, Ley D, Baycin Hizal D, Betenbaugh MJ, Voldborg B, Faustrup Kildegaard H, Min Lee G, Palsson BO, Nielsen J, Lewis NE. Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion. Nature Communications. 11: 68. PMID 31896772 DOI: 10.1038/S41467-019-13867-Y |
0.813 |
|
| 2020 |
Chiang W, Gazestani VH, Bao B, Liang C, Sorrention JT, Kellman BP, Ménard P, Arnsdorf J, Sukhova Z, Bjørn SP, Brøndum KK, Hansen AH, Yang Z, Joshi H, Clausen H, ... ... Lewis NE, et al. Systems Glycoengineering: Integrated Analyses of Glycomics, Transcriptomics and Phenotypic Data Reveal Complex Cellular Response to Glycoengineering in CHO Cells The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.07419 |
0.32 |
|
| 2020 |
Lewis NE, Richelle AE, Kellman BE. Elucidating the biosynthetic pathways of human milk oligosaccharides through a systems biology approach The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.05286 |
0.71 |
|
| 2020 |
Lewis NE. Elimination of the "essential" Warburg effect in mammalian cells through a multiplex genome engineering strategy The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.03715 |
0.365 |
|
| 2020 |
Lewis NE. Unraveling the metabolic and machinery constraints on protein secretion through a novel systems biology framework The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.02797 |
0.373 |
|
| 2020 |
Esko JD, Weiss RJ, Spahn P, Toledo AG, Chiang AW, Kellman BP, Li J, Benner C, Glass CK, Gordts PL, Lewis NE. Genome wide analysis of heparan sulfate assembly The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.00177 |
0.322 |
|
| 2019 |
Gazestani VH, Lewis NE. From Genotype to Phenotype: Augmenting Deep Learning with Networks and Systems Biology. Current Opinion in Systems Biology. 15: 68-73. PMID 31777764 DOI: 10.1016/J.Coisb.2019.04.001 |
0.338 |
|
| 2019 |
Julie la Cour Karottki K, Hefzi H, Xiong K, Shamie I, Hansen AH, Li S, Pedersen LE, Li S, Lee JS, Lee GM, Kildegaard HF, Lewis NE. Awakening dormant glycosyltransferases in CHO cells with CRISPRa. Biotechnology and Bioengineering. PMID 31631317 DOI: 10.1002/Bit.27199 |
0.793 |
|
| 2019 |
Toledo AG, Golden G, Campos AR, Cuello H, Sorrentino J, Lewis N, Varki N, Nizet V, Smith JW, Esko JD. Proteomic atlas of organ vasculopathies triggered by Staphylococcus aureus sepsis. Nature Communications. 10: 4656. PMID 31604940 DOI: 10.1038/S41467-019-12672-X |
0.78 |
|
| 2019 |
Gazestani VH, Pramparo T, Nalabolu S, Kellman BP, Murray S, Lopez L, Pierce K, Courchesne E, Lewis NE. A perturbed gene network containing PI3K-AKT, RAS-ERK and WNT-β-catenin pathways in leukocytes is linked to ASD genetics and symptom severity. Nature Neuroscience. 22: 1624-1634. PMID 31551593 DOI: 10.1038/S41593-019-0489-X |
0.536 |
|
| 2019 |
Richelle A, Joshi C, Lewis NE. Assessing key decisions for transcriptomic data integration in biochemical networks. Plos Computational Biology. 15: e1007185. PMID 31323017 DOI: 10.1371/Journal.Pcbi.1007185 |
0.729 |
|
| 2019 |
Chiang AWT, Li S, Kellman BP, Chattopadhyay G, Zhang Y, Kuo CC, Gutierrez JM, Ghazi F, Schmeisser H, Ménard P, Bjørn SP, Voldborg BG, Rosenberg AS, Puig M, Lewis NE. Combating viral contaminants in CHO cells by engineering innate immunity. Scientific Reports. 9: 8827. PMID 31222165 DOI: 10.1038/S41598-019-45126-X |
0.78 |
|
| 2019 |
Li S, Cha SW, Hefner K, Hizal DB, Bowen MA, Chaerkady R, Cole RN, Tejwani V, Kaushik P, Henry M, Meleady P, Sharfstein ST, Betenbaugh MJ, Bafna V, Lewis NE. Proteogenomic annotation of the Chinese hamster reveals extensive novel translation events and endogenous retroviral elements. Journal of Proteome Research. PMID 31020842 DOI: 10.1021/Acs.Jproteome.8B00935 |
0.767 |
|
| 2019 |
Richelle A, Chiang AWT, Kuo CC, Lewis NE. Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions. Plos Computational Biology. 15: e1006867. PMID 30986217 DOI: 10.1371/Journal.Pcbi.1006867 |
0.769 |
|
| 2019 |
Lytle NK, Ferguson LP, Rajbhandari N, Gilroy K, Fox RG, Deshpande A, Schürch CM, Hamilton M, Robertson N, Lin W, Noel P, Wartenberg M, Zlobec I, Eichmann M, Galván JA, ... ... Lewis NE, et al. A Multiscale Map of the Stem Cell State in Pancreatic Adenocarcinoma. Cell. PMID 30955884 DOI: 10.1016/J.Cell.2019.03.010 |
0.301 |
|
| 2019 |
Lee JS, Kildegaard HF, Lewis NE, Lee GM. Mitigating Clonal Variation in Recombinant Mammalian Cell Lines. Trends in Biotechnology. PMID 30898338 DOI: 10.1016/J.Tibtech.2019.02.007 |
0.558 |
|
| 2019 |
Xiong K, Marquart KF, Karottki KJC, Li S, Shamie I, Lee JS, Gerling S, Yeo NC, Chavez A, Lee GM, Lewis NE, Kildegaard HF. Reduced Apoptosis in Chinese Hamster Ovary Cells via Optimized CRISPR Interference. Biotechnology and Bioengineering. PMID 30883679 DOI: 10.1002/Bit.26969 |
0.771 |
|
| 2019 |
Pristovsek N, Nallapereddy S, Grav LM, Hefzi H, Lewis NE, Rugbjerg P, Hansen HG, Lee GM, Andersen MR, Kildegaard HF. Systematic Evaluation of Site-Specific Recombinant Gene Expression for Programmable Mammalian Cell Engineering. Acs Synthetic Biology. PMID 30807689 DOI: 10.1021/Acssynbio.8B00453 |
0.787 |
|
| 2019 |
Heirendt L, Arreckx S, Pfau T, Mendoza SN, Richelle A, Heinken A, Haraldsdóttir HS, Wachowiak J, Keating SM, Vlasov V, Magnusdóttir S, Ng CY, Preciat G, Žagare A, Chan SHJ, ... ... Lewis NE, et al. Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Nature Protocols. PMID 30787451 DOI: 10.1038/S41596-018-0098-2 |
0.798 |
|
| 2019 |
LaMonte GM, Orjuela-Sanchez P, Calla J, Wang LT, Li S, Swann J, Cowell AN, Zou BY, Abdel-Haleem Mohamed AM, Villa Galarce ZH, Moreno M, Tong Rios C, Vinetz JM, Lewis N, Winzeler EA. Dual RNA-seq identifies human mucosal immunity protein Mucin-13 as a hallmark of Plasmodium exoerythrocytic infection. Nature Communications. 10: 488. PMID 30700707 DOI: 10.1038/S41467-019-08349-0 |
0.716 |
|
| 2018 |
Witting M, Hastings J, Rodriguez N, Joshi CJ, Hattwell JPN, Ebert PR, van Weeghel M, Gao AW, Wakelam MJO, Houtkooper RH, Mains A, Le Novère N, Sadykoff S, Schroeder F, Lewis NE, et al. Modeling Meets Metabolomics-The WormJam Consensus Model as Basis for Metabolic Studies in the Model Organism . Frontiers in Molecular Biosciences. 5: 96. PMID 30488036 DOI: 10.3389/Fmolb.2018.00096 |
0.435 |
|
| 2018 |
Lombardo MV, Pramparo T, Gazestani V, Warrier V, Bethlehem RAI, Carter Barnes C, Lopez L, Lewis NE, Eyler L, Pierce K, Courchesne E. Large-scale associations between the leukocyte transcriptome and BOLD responses to speech differ in autism early language outcome subtypes. Nature Neuroscience. 21: 1680-1688. PMID 30482947 DOI: 10.1038/S41593-018-0281-3 |
0.518 |
|
| 2018 |
Lee JS, Park JH, Ha TK, Samoudi M, Lewis N, Palsson BØ, Kildegaard HF, Lee GM. Revealing key determinants of clonal variation in transgene expression in recombinant CHO cells using targeted genome editing. Acs Synthetic Biology. PMID 30388888 DOI: 10.1021/Acssynbio.8B00290 |
0.625 |
|
| 2018 |
Brunk E, Chang RL, Xia J, Hefzi H, Yurkovich JT, Kim D, Buckmiller E, Wang HH, Cho BK, Yang C, Palsson BO, Church GM, Lewis NE. Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow. Proceedings of the National Academy of Sciences of the United States of America. PMID 30301795 DOI: 10.1073/Pnas.1811971115 |
0.821 |
|
| 2018 |
Grav LM, Sergeeva D, Lee JS, Marín de Mas I, Lewis NE, Andersen MR, Nielsen LK, Lee GM, Kildegaard HF. Minimizing clonal variation during mammalian cell line engineering for improved systems biology data generation. Acs Synthetic Biology. PMID 30060646 DOI: 10.1021/Acssynbio.8B00140 |
0.598 |
|
| 2018 |
Yeo NC, Chavez A, Lance-Byrne A, Chan Y, Menn D, Milanova D, Kuo CC, Guo X, Sharma S, Tung A, Cecchi RJ, Tuttle M, Pradhan S, Lim ET, Davidsohn N, ... ... Lewis NE, et al. An enhanced CRISPR repressor for targeted mammalian gene regulation. Nature Methods. PMID 30013045 DOI: 10.1038/S41592-018-0048-5 |
0.458 |
|
| 2018 |
Courchesne E, Pramparo T, Gazestani VH, Lombardo MV, Pierce K, Lewis NE. The ASD Living Biology: from cell proliferation to clinical phenotype. Molecular Psychiatry. PMID 29934544 DOI: 10.1038/S41380-018-0056-Y |
0.542 |
|
| 2018 |
Rupp O, MacDonald ML, Li S, Dhiman H, Polson S, Griep S, Heffner K, Hernandez I, Brinkrolf K, Jadhav V, Samoudi M, Hao H, Kingham B, Goesmann A, Betenbaugh MJ, ... Lewis NE, et al. A reference genome of the Chinese hamster based on a hybrid assembly strategy. Biotechnology and Bioengineering. PMID 29704459 DOI: 10.1002/Bit.26722 |
0.735 |
|
| 2018 |
Abdel-Haleem AM, Hefzi H, Mineta K, Gao X, Gojobori T, Palsson BO, Lewis NE, Jamshidi N. Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting. Plos Computational Biology. 14: e1005895. PMID 29300748 DOI: 10.1371/Journal.Pcbi.1005895 |
0.781 |
|
| 2018 |
Lewis NE, Chiang AWT, Bao B, Kuo C, Kellman B, Richelle A, Liang A, Arnsdorf J, Sukhova Z, Ménard P, Hansen AH, Yang Z, Joshi H, Clausen H, Voldborg BG. The cellular impact of glycoengineering Glycobiology. 28: 1074-1074. DOI: 10.1093/Glycob/Cwy088 |
0.693 |
|
| 2017 |
Kuo CC, Chiang AW, Shamie I, Samoudi M, Gutierrez JM, Lewis NE. The emerging role of systems biology for engineering protein production in CHO cells. Current Opinion in Biotechnology. 51: 64-69. PMID 29223005 DOI: 10.1016/J.Copbio.2017.11.015 |
0.787 |
|
| 2017 |
Spahn PN, Bath T, Weiss RJ, Kim J, Esko JD, Lewis NE, Harismendy O. PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens. Scientific Reports. 7: 15854. PMID 29158538 DOI: 10.1038/S41598-017-16193-9 |
0.34 |
|
| 2017 |
Abdel-Haleem AM, Lewis NE, Jamshidi N, Mineta K, Gao X, Gojobori T. The Emerging Facets of Non-Cancerous Warburg Effect. Frontiers in Endocrinology. 8: 279. PMID 29109698 DOI: 10.3389/Fendo.2017.00279 |
0.796 |
|
| 2017 |
Richelle A, Lewis NE. Improvements in protein production in mammalian cells from targeted metabolic engineering. Current Opinion in Systems Biology. 6: 1-6. PMID 29104947 DOI: 10.1016/J.Coisb.2017.05.019 |
0.769 |
|
| 2017 |
Lombardo MV, Courchesne E, Lewis NE, Pramparo T. Hierarchical cortical transcriptome disorganization in autism. Molecular Autism. 8: 29. PMID 28649314 DOI: 10.1186/S13229-017-0147-7 |
0.542 |
|
| 2017 |
Shen JP, Zhao D, Sasik R, Luebeck J, Birmingham A, Bojorquez-Gomez A, Licon K, Klepper K, Pekin D, Beckett AN, Sanchez KS, Thomas A, Kuo CC, Du D, Roguev A, ... Lewis NE, et al. Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions. Nature Methods. PMID 28319113 DOI: 10.1038/Nmeth.4225 |
0.735 |
|
| 2017 |
Opdam S, Richelle A, Kellman B, Li S, Zielinski DC, Lewis NE. A Systematic Evaluation of Methods for Tailoring Genome-Scale Metabolic Models. Cell Systems. PMID 28215528 DOI: 10.1016/J.Cels.2017.01.010 |
0.823 |
|
| 2017 |
Kallehauge TB, Li S, Pedersen LE, Ha TK, Ley D, Andersen MR, Kildegaard HF, Lee GM, Lewis NE. Ribosome profiling-guided depletion of an mRNA increases cell growth rate and protein secretion. Scientific Reports. 7: 40388. PMID 28091612 DOI: 10.1038/Srep40388 |
0.78 |
|
| 2017 |
van Wijk XM, Döhrmann S, Hallström BM, Li S, Voldborg BG, Meng BX, McKee KK, van Kuppevelt TH, Yurchenco PD, Palsson BO, Lewis NE, Nizet V, Esko JD. Whole-Genome Sequencing of Invasion-Resistant Cells Identifies Laminin α2 as a Host Factor for Bacterial Invasion. Mbio. 8. PMID 28074024 DOI: 10.1128/Mbio.02128-16 |
0.765 |
|
| 2017 |
Dräger A, King ZA, Yurkovich JT, Blessing C, Khandelwa D, Ebrahim A, Sonnenschein N, Lewis NE, Palsson BO. Visualization and creation of biochemical networks with Escher F1000research. 6. DOI: 10.7490/F1000Research.1114756.1 |
0.758 |
|
| 2016 |
Hefzi H, Ang KS, Hanscho M, Bordbar A, Ruckerbauer D, Lakshmanan M, Orellana CA, Baycin-Hizal D, Huang Y, Ley D, Martinez VS, Kyriakopoulos S, Jiménez NE, Zielinski DC, Quek LE, ... ... Lewis NE, et al. A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism. Cell Systems. 3: 434-443.e8. PMID 27883890 DOI: 10.1016/J.Cels.2016.10.020 |
0.811 |
|
| 2016 |
Spahn PN, Hansen AH, Kol S, Voldborg BG, Lewis NE. Predictive glycoengineering of biosimilars using a Markov chain glycosylation model. Biotechnology Journal. PMID 27860290 DOI: 10.1002/Biot.201600489 |
0.329 |
|
| 2016 |
Chiang AW, Li S, Spahn PN, Richelle A, Kuo CC, Samoudi M, Lewis NE. Modulating carbohydrate-protein interactions through glycoengineering of monoclonal antibodies to impact cancer physiology. Current Opinion in Structural Biology. 40: 104-111. PMID 27639240 DOI: 10.1016/J.Sbi.2016.08.008 |
0.792 |
|
| 2016 |
Swainston N, Smallbone K, Hefzi H, Dobson PD, Brewer J, Hanscho M, Zielinski DC, Ang KS, Gardiner NJ, Gutierrez JM, Kyriakopoulos S, Lakshmanan M, Li S, Liu JK, Martínez VS, ... ... Lewis NE, et al. Recon 2.2: from reconstruction to model of human metabolism. Metabolomics : Official Journal of the Metabolomic Society. 12: 109. PMID 27358602 DOI: 10.1007/S11306-016-1051-4 |
0.793 |
|
| 2016 |
Golabgir A, Gutierrez JM, Hefzi H, Li S, Palsson BO, Herwig C, Lewis NE. Quantitative feature extraction from the Chinese hamster ovary bioprocess bibliome using a novel meta-analysis workflow. Biotechnology Advances. PMID 26948029 DOI: 10.1016/J.Biotechadv.2016.02.011 |
0.789 |
|
| 2016 |
Dräger A, King ZA, Lu JS, Ebrahim A, Sonnenschein N, Miller PC, Lerman JA, Palsson BO, Lewis NE. New standard resources for systems biology: BiGG Models database and the visual pathway editor Escher F1000research. 5. DOI: 10.7490/F1000Research.1112788.1 |
0.781 |
|
| 2016 |
Mohamed A, Abuelela A, Merzaban J, Mineta K, Jamshidi N, Lewis N, Gao X, Gojobori T. Systems-biology guided identification of metabolic genes implicated in the activation of T-cells F1000research. 5. DOI: 10.7490/F1000Research.1112667.1 |
0.627 |
|
| 2015 |
Pramparo T, Lombardo MV, Campbell K, Barnes CC, Marinero S, Solso S, Young J, Mayo M, Dale A, Ahrens-Barbeau C, Murray SS, Lopez L, Lewis N, Pierce K, Courchesne E. Cell cycle networks link gene expression dysregulation, mutation, and brain maldevelopment in autistic toddlers. Molecular Systems Biology. 11: 841. PMID 26668231 DOI: 10.15252/Msb.20156108 |
0.552 |
|
| 2015 |
Spahn PN, Hansen AH, Hansen HG, Arnsdorf J, Kildegaard HF, Lewis NE. A Markov chain model for N-linked protein glycosylation - towards a low-parameter tool for model-driven glycoengineering. Metabolic Engineering. PMID 26537759 DOI: 10.1016/J.Ymben.2015.10.007 |
0.376 |
|
| 2015 |
King ZA, Lu J, Dräger A, Miller P, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, Lewis NE. BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. Nucleic Acids Research. PMID 26476456 DOI: 10.1093/Nar/Gkv1049 |
0.811 |
|
| 2015 |
Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, ... ... Lewis NE, et al. Do genome-scale models need exact solvers or clearer standards? Molecular Systems Biology. 11: 831. PMID 26467284 DOI: 10.15252/Msb.20156157 |
0.752 |
|
| 2015 |
Kumar A, Baycin-Hizal D, Wolozny D, Pedersen LE, Lewis NE, Heffner K, Chaerkady R, Cole RN, Shiloach J, Zhang H, Bowen MA, Betenbaugh MJ. Elucidation of the CHO Super-Ome (CHO-SO) by ProteoInfomatics. Journal of Proteome Research. PMID 26418914 DOI: 10.1021/Acs.Jproteome.5B00588 |
0.371 |
|
| 2015 |
King ZA, Dräger A, Ebrahim A, Sonnenschein N, Lewis NE, Palsson BO. Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways. Plos Computational Biology. 11: e1004321. PMID 26313928 DOI: 10.1371/Journal.Pcbi.1004321 |
0.801 |
|
| 2015 |
Swann J, Jamshidi N, Lewis NE, Winzeler EA. Systems analysis of host-parasite interactions. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. PMID 26306749 DOI: 10.1002/Wsbm.1311 |
0.581 |
|
| 2015 |
Gutierrez JM, Lewis NE. Optimizing eukaryotic cell hosts for protein production through systems biotechnology and genome-scale modeling. Biotechnology Journal. PMID 26099571 DOI: 10.1002/Biot.201400647 |
0.82 |
|
| 2015 |
Rodriguez N, Thomas A, Watanabe L, Vazirabad IY, Kofia V, Gómez HF, Mittag F, Matthes J, Rudolph J, Wrzodek F, Netz E, Diamantikos A, Eichner J, Keller R, Wrzodek C, ... ... Lewis NE, et al. JSBML 1.0: providing a smorgasbord of options to encode systems biology models. Bioinformatics (Oxford, England). PMID 26079347 DOI: 10.1093/Bioinformatics/Btv341 |
0.659 |
|
| 2015 |
Lee JS, Grav LM, Lewis NE, Faustrup Kildegaard H. CRISPR/Cas9-mediated genome engineering of CHO cell factories: Application and perspectives. Biotechnology Journal. 10: 979-94. PMID 26058577 DOI: 10.1002/Biot.201500082 |
0.423 |
|
| 2015 |
Spahn PN, Hansen AH, Hansen HG, Arnsdorf J, Kildegaard HF, Lewis NE. A novel low-parameter computational model to aid in-silico glycoengineering Bmc Proceedings. 9. DOI: 10.1186/1753-6561-9-S9-P26 |
0.342 |
|
| 2014 |
Busskamp V, Lewis NE, Guye P, Ng AH, Shipman SL, Byrne SM, Sanjana NE, Murn J, Li Y, Li S, Stadler M, Weiss R, Church GM. Rapid neurogenesis through transcriptional activation in human stem cells. Molecular Systems Biology. 10: 760. PMID 25403753 DOI: 10.15252/Msb.20145508 |
0.769 |
|
| 2014 |
Spahn PN, Lewis NE. Systems glycobiology for glycoengineering. Current Opinion in Biotechnology. 30: 218-24. PMID 25202878 DOI: 10.1016/J.Copbio.2014.08.004 |
0.365 |
|
| 2014 |
Kumar A, Harrelson T, Lewis NE, Gallagher EJ, LeRoith D, Shiloach J, Betenbaugh MJ. Multi-tissue computational modeling analyzes pathophysiology of type 2 diabetes in MKR mice. Plos One. 9: e102319. PMID 25029527 DOI: 10.1371/Journal.Pone.0102319 |
0.344 |
|
| 2014 |
Bordbar A, Nagarajan H, Lewis NE, Latif H, Ebrahim A, Federowicz S, Schellenberger J, Palsson BO. Minimal metabolic pathway structure is consistent with associated biomolecular interactions. Molecular Systems Biology. 10: 737. PMID 24987116 DOI: 10.15252/Msb.20145243 |
0.799 |
|
| 2014 |
Robasky K, Lewis NE, Church GM. The role of replicates for error mitigation in next-generation sequencing. Nature Reviews. Genetics. 15: 56-62. PMID 24322726 DOI: 10.1038/Nrg3655 |
0.442 |
|
| 2014 |
Hefzi H, Lewis NE. From random mutagenesis to systems biology in metabolic engineering of mammalian cells Pharmaceutical Bioprocessing. 2: 355-358. DOI: 10.4155/Pbp.14.36 |
0.805 |
|
| 2013 |
Lewis NE, Abdel-Haleem AM. The evolution of genome-scale models of cancer metabolism. Frontiers in Physiology. 4: 237. PMID 24027532 DOI: 10.3389/Fphys.2013.00237 |
0.804 |
|
| 2013 |
Lewis NE, Liu X, Li Y, Nagarajan H, Yerganian G, O'Brien E, Bordbar A, Roth AM, Rosenbloom J, Bian C, Xie M, Chen W, Li N, Baycin-Hizal D, Latif H, et al. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nature Biotechnology. 31: 759-65. PMID 23873082 DOI: 10.1038/Nbt.2624 |
0.799 |
|
| 2013 |
Kildegaard HF, Baycin-Hizal D, Lewis NE, Betenbaugh MJ. The emerging CHO systems biology era: harnessing the 'omics revolution for biotechnology. Current Opinion in Biotechnology. 24: 1102-7. PMID 23523260 DOI: 10.1016/J.Copbio.2013.02.007 |
0.452 |
|
| 2013 |
Hyduke DR, Lewis NE, Palsson BØ. Analysis of omics data with genome-scale models of metabolism. Molecular Biosystems. 9: 167-74. PMID 23247105 DOI: 10.1039/C2Mb25453K |
0.528 |
|
| 2013 |
Hefzi H, Palsson BO, Lewis NE. Reconstruction of Genome-Scale Metabolic Networks Handbook of Systems Biology. 229-250. DOI: 10.1016/B978-0-12-385944-0.00012-5 |
0.788 |
|
| 2012 |
Noor E, Lewis NE, Milo R. A proof for loop-law constraints in stoichiometric metabolic networks. Bmc Systems Biology. 6: 140. PMID 23146116 DOI: 10.1186/1752-0509-6-140 |
0.364 |
|
| 2012 |
Baycin-Hizal D, Tabb DL, Chaerkady R, Chen L, Lewis NE, Nagarajan H, Sarkaria V, Kumar A, Wolozny D, Colao J, Jacobson E, Tian Y, O'Meally RN, Krag SS, Cole RN, et al. Proteomic analysis of Chinese hamster ovary cells. Journal of Proteome Research. 11: 5265-76. PMID 22971049 DOI: 10.1021/Pr300476W |
0.745 |
|
| 2012 |
Nam H, Lewis NE, Lerman JA, Lee DH, Chang RL, Kim D, Palsson BO. Network context and selection in the evolution to enzyme specificity. Science (New York, N.Y.). 337: 1101-4. PMID 22936779 DOI: 10.1126/Science.1216861 |
0.791 |
|
| 2012 |
Lerman JA, Hyduke DR, Latif H, Portnoy VA, Lewis NE, Orth JD, Schrimpe-Rutledge AC, Smith RD, Adkins JN, Zengler K, Palsson BO. In silico method for modelling metabolism and gene product expression at genome scale. Nature Communications. 3: 929. PMID 22760628 DOI: 10.1038/Ncomms1928 |
0.821 |
|
| 2012 |
Lewis NE, Nagarajan H, Palsson BO. Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nature Reviews. Microbiology. 10: 291-305. PMID 22367118 DOI: 10.1038/Nrmicro2737 |
0.762 |
|
| 2011 |
Schellenberger J, Que R, Fleming RM, Thiele I, Orth JD, Feist AM, Zielinski DC, Bordbar A, Lewis NE, Rahmanian S, Kang J, Hyduke DR, Palsson BØ. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nature Protocols. 6: 1290-307. PMID 21886097 DOI: 10.1038/Nprot.2011.308 |
0.81 |
|
| 2011 |
Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan HC, et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology. 29: 735-41. PMID 21804562 DOI: 10.1038/Nbt.1932 |
0.811 |
|
| 2011 |
Conrad TM, Lewis NE, Palsson BØ. Microbial laboratory evolution in the era of genome-scale science. Molecular Systems Biology. 7: 509. PMID 21734648 DOI: 10.1038/Msb.2011.42 |
0.68 |
|
| 2011 |
Nam H, Conrad TM, Lewis NE. The role of cellular objectives and selective pressures in metabolic pathway evolution. Current Opinion in Biotechnology. 22: 595-600. PMID 21481583 DOI: 10.1016/J.Copbio.2011.03.006 |
0.623 |
|
| 2011 |
Schellenberger J, Lewis NE, Palsson BØ. Elimination of thermodynamically infeasible loops in steady-state metabolic models. Biophysical Journal. 100: 544-53. PMID 21281568 DOI: 10.1016/J.Bpj.2010.12.3707 |
0.768 |
|
| 2011 |
Hyduke D, Schellenberger J, Que R, Fleming R, Thiele I, Orth J, Feist A, Zielinski D, Bordbar A, Lewis N, Rahmanian S, Kang J, Palsson B. COBRA Toolbox 2.0 Protocol Exchange. DOI: 10.1038/Protex.2011.234 |
0.745 |
|
| 2010 |
Lewis NE, Schramm G, Bordbar A, Schellenberger J, Andersen MP, Cheng JK, Patel N, Yee A, Lewis RA, Eils R, König R, Palsson BØ. Large-scale in silico modeling of metabolic interactions between cell types in the human brain. Nature Biotechnology. 28: 1279-85. PMID 21102456 DOI: 10.1038/Nbt.1711 |
0.823 |
|
| 2010 |
Conrad TM, Frazier M, Joyce AR, Cho BK, Knight EM, Lewis NE, Landick R, Palsson BØ. RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. Proceedings of the National Academy of Sciences of the United States of America. 107: 20500-5. PMID 21057108 DOI: 10.1073/Pnas.0911253107 |
0.768 |
|
| 2010 |
Bordbar A, Lewis NE, Schellenberger J, Palsson BØ, Jamshidi N. Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions. Molecular Systems Biology. 6: 422. PMID 20959820 DOI: 10.1038/Msb.2010.68 |
0.816 |
|
| 2010 |
Portnoy VA, Scott DA, Lewis NE, Tarasova Y, Osterman AL, Palsson BØ. Deletion of genes encoding cytochrome oxidases and quinol monooxygenase blocks the aerobic-anaerobic shift in Escherichia coli K-12 MG1655. Applied and Environmental Microbiology. 76: 6529-40. PMID 20709841 DOI: 10.1128/Aem.01178-10 |
0.803 |
|
| 2010 |
Lewis NE, Hixson KK, Conrad TM, Lerman JA, Charusanti P, Polpitiya AD, Adkins JN, Schramm G, Purvine SO, Lopez-Ferrer D, Weitz KK, Eils R, König R, Smith RD, Palsson BØ. Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models. Molecular Systems Biology. 6: 390. PMID 20664636 DOI: 10.1038/Msb.2010.47 |
0.795 |
|
| 2010 |
Bar-Even A, Noor E, Lewis NE, Milo R. Design and analysis of synthetic carbon fixation pathways. Proceedings of the National Academy of Sciences of the United States of America. 107: 8889-94. PMID 20410460 DOI: 10.1073/Pnas.0907176107 |
0.346 |
|
| 2009 |
Lewis NE, Cho BK, Knight EM, Palsson BO. Gene expression profiling and the use of genome-scale in silico models of Escherichia coli for analysis: providing context for content. Journal of Bacteriology. 191: 3437-44. PMID 19363119 DOI: 10.1128/Jb.00034-09 |
0.525 |
|
| 2004 |
Merrell K, Southwick K, Graves SW, Esplin MS, Lewis NE, Thulin CD. Analysis of low-abundance, low-molecular-weight serum proteins using mass spectrometry. Journal of Biomolecular Techniques : Jbt. 15: 238-48. PMID 15585820 |
0.683 |
|
| Show low-probability matches. |
